7T subject templates images

.gitmodules

@@ -7,3 +7,6 @@
 [submodule "raw/structural"]
 	path = raw/structural
 	url = ../structural
+[submodule "raw/phase1"]
+	path = raw/phase1
+	url = ../phase1

code/proc.cfg

@@ -43,3 +43,19 @@ use qform = yes
 warp resolution = 10
 motion correction = False
 input is subject template = yes
+
+[subject template bold7Tp1]
+resolution = 1.2 1.2 1.2
+trim roi = 10 160 0 186 27 48
+linear iterations = 2
+final skullstrip = yes
+bet padding = yes
+template bet frac = 0.12
+template bet gradient = 0
+zslice padding = 80
+use 4d mean = no
+foreground threshold = 2.0
+input expression = raw/phase1/%%(subj)s/BOLD/task00[1,2]*_run.*/bold_dico\.nii.*
+output base directory = %%(subj)s
+
+

raw/phase1

@@ -0,0 +1 @@
+Subproject commit 579e30c97a1c055c4b35824946b172fd904d7a00

sub-01/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Xj/6X/MD5E-s2063151--6cd5790c2b1fd40006f9eae5446fc1a8.nii.gz/MD5E-s2063151--6cd5790c2b1fd40006f9eae5446fc1a8.nii.gz

sub-01/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/WX/jQ/MD5E-s23963--100d313797b107e836ba74b327bc376b.nii.gz/MD5E-s23963--100d313797b107e836ba74b327bc376b.nii.gz

sub-01/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/P4/7Z/MD5E-s5698779--c75a65164019a5740e3acdb9a39278da.nii.gz/MD5E-s5698779--c75a65164019a5740e3acdb9a39278da.nii.gz

sub-02/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/1W/zQ/MD5E-s2304592--2a1a328a8789d48869568db5c2242590.nii.gz/MD5E-s2304592--2a1a328a8789d48869568db5c2242590.nii.gz

sub-02/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/J5/Qm/MD5E-s24600--145a2ca6686e38fee4cf518a2561eb39.nii.gz/MD5E-s24600--145a2ca6686e38fee4cf518a2561eb39.nii.gz

sub-02/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/KM/Xq/MD5E-s6427726--6dd16b66015a4f9a86d04fce00a5a24f.nii.gz/MD5E-s6427726--6dd16b66015a4f9a86d04fce00a5a24f.nii.gz

sub-03/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/2W/WF/MD5E-s1839805--4f60bcc6c9d0be3c081cde6ea5763005.nii.gz/MD5E-s1839805--4f60bcc6c9d0be3c081cde6ea5763005.nii.gz

sub-03/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/q1/4G/MD5E-s22617--174afbb1159b06a73ede9d22b0505572.nii.gz/MD5E-s22617--174afbb1159b06a73ede9d22b0505572.nii.gz

sub-03/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/0w/zJ/MD5E-s5762183--ac4642c25986bda7dfaca70cb2ed0f05.nii.gz/MD5E-s5762183--ac4642c25986bda7dfaca70cb2ed0f05.nii.gz

sub-04/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/qk/v1/MD5E-s2025732--d76089c56443fd4b79c71fc141d343c7.nii.gz/MD5E-s2025732--d76089c56443fd4b79c71fc141d343c7.nii.gz

sub-04/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/3m/Qq/MD5E-s23665--f04aa37de965c9c91ae263a01b7c71f8.nii.gz/MD5E-s23665--f04aa37de965c9c91ae263a01b7c71f8.nii.gz

sub-04/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/MP/48/MD5E-s6137033--ae6019ba7663799eb6bebc19259101cf.nii.gz/MD5E-s6137033--ae6019ba7663799eb6bebc19259101cf.nii.gz

sub-05/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/2P/x6/MD5E-s1960321--aadb7d1ec4649830d14c0165aa66ab17.nii.gz/MD5E-s1960321--aadb7d1ec4649830d14c0165aa66ab17.nii.gz

sub-05/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Jw/xm/MD5E-s23367--62c09202056a5fc4f3c754f3a929b470.nii.gz/MD5E-s23367--62c09202056a5fc4f3c754f3a929b470.nii.gz

sub-05/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/xw/89/MD5E-s6576423--92db2ddda4e1fe54abe5c4c121bd5af4.nii.gz/MD5E-s6576423--92db2ddda4e1fe54abe5c4c121bd5af4.nii.gz

sub-06/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Pg/fm/MD5E-s2381678--2c1c5155175b299f32a8d3ac0751d786.nii.gz/MD5E-s2381678--2c1c5155175b299f32a8d3ac0751d786.nii.gz

sub-06/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/zv/kG/MD5E-s25057--3d3d19cff5a66b4865d3bef0854a7c63.nii.gz/MD5E-s25057--3d3d19cff5a66b4865d3bef0854a7c63.nii.gz

sub-06/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/z9/k6/MD5E-s6328646--dd799e8aad3e245d03c69f6f8254f80f.nii.gz/MD5E-s6328646--dd799e8aad3e245d03c69f6f8254f80f.nii.gz

sub-07/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Q1/7V/MD5E-s2170822--c9257b91af74c381771f990821ac0dd1.nii.gz/MD5E-s2170822--c9257b91af74c381771f990821ac0dd1.nii.gz

sub-07/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/96/qQ/MD5E-s23941--4a278c40b2baf2b913052f4d91a0ab3f.nii.gz/MD5E-s23941--4a278c40b2baf2b913052f4d91a0ab3f.nii.gz

sub-07/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/GV/52/MD5E-s6021040--0c11ed9c684a9fbc72f93581b6cb8d88.nii.gz/MD5E-s6021040--0c11ed9c684a9fbc72f93581b6cb8d88.nii.gz

sub-08/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/48/KG/MD5E-s2101939--d20fa010a2e1801c27215fce5e77f8f2.nii.gz/MD5E-s2101939--d20fa010a2e1801c27215fce5e77f8f2.nii.gz

sub-08/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Jq/Zv/MD5E-s23625--ce1fc4992543fb47cd24bc2435fd5592.nii.gz/MD5E-s23625--ce1fc4992543fb47cd24bc2435fd5592.nii.gz

sub-08/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/VJ/xZ/MD5E-s5879422--35df158bb399ecf8a34748fe5d22d40c.nii.gz/MD5E-s5879422--35df158bb399ecf8a34748fe5d22d40c.nii.gz

sub-09/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/f5/ZK/MD5E-s1977716--3cc4db54f62735bd72de10f4e9d623c6.nii.gz/MD5E-s1977716--3cc4db54f62735bd72de10f4e9d623c6.nii.gz

sub-09/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/zg/2F/MD5E-s23883--18f026dd102aed89656ae9e7c0b45faa.nii.gz/MD5E-s23883--18f026dd102aed89656ae9e7c0b45faa.nii.gz

sub-09/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Mx/86/MD5E-s6394221--c7cce123b202eeeb941e3f471928aa4c.nii.gz/MD5E-s6394221--c7cce123b202eeeb941e3f471928aa4c.nii.gz

sub-10/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/FW/J2/MD5E-s1651637--bdc889106f96a0a00d70c92476e75ea1.nii.gz/MD5E-s1651637--bdc889106f96a0a00d70c92476e75ea1.nii.gz

sub-10/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/22/w5/MD5E-s23209--97b8dc5a24b9c06722acdc7fad40ee62.nii.gz/MD5E-s23209--97b8dc5a24b9c06722acdc7fad40ee62.nii.gz

sub-10/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/xq/fv/MD5E-s4924675--02e9b45d3629e39da595b4a539db263d.nii.gz/MD5E-s4924675--02e9b45d3629e39da595b4a539db263d.nii.gz

sub-11/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/56/Xm/MD5E-s2229189--39eed5caba52d9269633baa256dc5050.nii.gz/MD5E-s2229189--39eed5caba52d9269633baa256dc5050.nii.gz

sub-11/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Z3/8z/MD5E-s24114--2e8a0e4db03e8b4c6d695ae67c26a2ae.nii.gz/MD5E-s24114--2e8a0e4db03e8b4c6d695ae67c26a2ae.nii.gz

sub-11/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/W0/GQ/MD5E-s6414951--6e3e58e3b9eeee68d61e6158f2f4ebd2.nii.gz/MD5E-s6414951--6e3e58e3b9eeee68d61e6158f2f4ebd2.nii.gz

sub-12/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Jf/5Q/MD5E-s1989400--5dbe77f89ed1342e424af9970c503d35.nii.gz/MD5E-s1989400--5dbe77f89ed1342e424af9970c503d35.nii.gz

sub-12/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/2J/5w/MD5E-s23847--7fe6a97bb143f93bb9e7a738f30a0e91.nii.gz/MD5E-s23847--7fe6a97bb143f93bb9e7a738f30a0e91.nii.gz

sub-12/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/20/wP/MD5E-s6010934--cd867fcbb7f3f5c9f1859c317b62a388.nii.gz/MD5E-s6010934--cd867fcbb7f3f5c9f1859c317b62a388.nii.gz

sub-13/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Xm/zK/MD5E-s1827780--d9171266d1a0ab3be1a821517c7bf1b1.nii.gz/MD5E-s1827780--d9171266d1a0ab3be1a821517c7bf1b1.nii.gz

sub-13/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/3J/xk/MD5E-s22811--0b618718801edf6809faffa44376d8ca.nii.gz/MD5E-s22811--0b618718801edf6809faffa44376d8ca.nii.gz

sub-13/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/57/6f/MD5E-s5855180--5e29ede65f65df6f8df7396eb844e3b7.nii.gz/MD5E-s5855180--5e29ede65f65df6f8df7396eb844e3b7.nii.gz

sub-14/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/13/gk/MD5E-s1830774--46431c0250348d14492c70d8591b53cd.nii.gz/MD5E-s1830774--46431c0250348d14492c70d8591b53cd.nii.gz

sub-14/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/m3/v0/MD5E-s22731--95f59c1e16167788950f5ee112085fea.nii.gz/MD5E-s22731--95f59c1e16167788950f5ee112085fea.nii.gz

sub-14/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Fv/28/MD5E-s5732216--e9d8445b8cf1c04d0a8d807d970c2a6f.nii.gz/MD5E-s5732216--e9d8445b8cf1c04d0a8d807d970c2a6f.nii.gz

sub-15/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/3F/X5/MD5E-s2076901--2036de062c5a35a7013f151944e19f5d.nii.gz/MD5E-s2076901--2036de062c5a35a7013f151944e19f5d.nii.gz

sub-15/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/mq/p2/MD5E-s24248--59d3655e1bbe4d2b9d63f3501728f43f.nii.gz/MD5E-s24248--59d3655e1bbe4d2b9d63f3501728f43f.nii.gz

sub-15/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/q7/4K/MD5E-s6098321--5244927ebc0d1d07e91501faacec3227.nii.gz/MD5E-s6098321--5244927ebc0d1d07e91501faacec3227.nii.gz

sub-16/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/kJ/gj/MD5E-s2311317--96bbf0be385794531e121cd0b984ecba.nii.gz/MD5E-s2311317--96bbf0be385794531e121cd0b984ecba.nii.gz

sub-16/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/XK/21/MD5E-s24824--bb157e956e830cda6c1038d380eb43ac.nii.gz/MD5E-s24824--bb157e956e830cda6c1038d380eb43ac.nii.gz

sub-16/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Mv/7P/MD5E-s6445085--4b4f0daec4c498f35c42ba682b8caada.nii.gz/MD5E-s6445085--4b4f0daec4c498f35c42ba682b8caada.nii.gz

sub-17/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/z3/06/MD5E-s1835508--17ea6657a388e0cb59a6f98a3d9cddae.nii.gz/MD5E-s1835508--17ea6657a388e0cb59a6f98a3d9cddae.nii.gz

sub-17/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/0v/F7/MD5E-s22185--c4eb759c8480654f1ee82cff791b4680.nii.gz/MD5E-s22185--c4eb759c8480654f1ee82cff791b4680.nii.gz

sub-17/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/3f/29/MD5E-s5942230--f039bf9dbf24e47dcc85ad56787872f2.nii.gz/MD5E-s5942230--f039bf9dbf24e47dcc85ad56787872f2.nii.gz

sub-18/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Gv/Pv/MD5E-s1960023--1b370acfd943ccd6b126ca26c21ab429.nii.gz/MD5E-s1960023--1b370acfd943ccd6b126ca26c21ab429.nii.gz

sub-18/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/x4/Fx/MD5E-s23034--cff4c00dd959c047562b0e4d9b08b5a5.nii.gz/MD5E-s23034--cff4c00dd959c047562b0e4d9b08b5a5.nii.gz

sub-18/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/77/2M/MD5E-s6106840--6a1602df9018752cc527db012f34b5fc.nii.gz/MD5E-s6106840--6a1602df9018752cc527db012f34b5fc.nii.gz

sub-19/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/V3/9K/MD5E-s1975875--c2927dec19636ed439fae1a4c61bfb4c.nii.gz/MD5E-s1975875--c2927dec19636ed439fae1a4c61bfb4c.nii.gz

sub-19/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/g4/Z0/MD5E-s23924--33db97c9f690a7c4bf9f6c3603178118.nii.gz/MD5E-s23924--33db97c9f690a7c4bf9f6c3603178118.nii.gz

sub-19/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
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sub-20/bold7Tp1/brain.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/1w/J7/MD5E-s1917911--77f4ba5e62722a995b067cab70fdfc3a.nii.gz/MD5E-s1917911--77f4ba5e62722a995b067cab70fdfc3a.nii.gz

sub-20/bold7Tp1/brain_mask.nii.gz

@@ -0,0 +1 @@
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sub-20/bold7Tp1/head.nii.gz

@@ -0,0 +1 @@
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