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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub020 --surf-wm-vol --ctab /opt/freesurfer/5.3.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake6
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub020
    14. 

  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 232702.933894, mm^3
    15. 

  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 233629.918512, mm^3
    16. 

  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 466332.852406, mm^3
    17. 

  17. # Measure Mask, MaskVol, Mask Volume, 1600687.000000, mm^3
    18. 

  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1189215.603728, mm^3
    19. 

  19. # SegVolFile mri/wmparc.mgz 
    20. 

  20. # SegVolFileTimeStamp  2013/08/08 23:33:55 
    21. 

  21. # ColorTable /opt/freesurfer/5.3.0/WMParcStatsLUT.txt 
    22. 

  22. # ColorTableTimeStamp 2013/05/13 23:21:15 
    23. 

  23. # InVolFile  mri/norm.mgz 
    24. 

  24. # InVolFileTimeStamp  2013/08/08 12:13:12 
    25. 

  25. # InVolFrame 0 
    26. 

  26. # PVVolFile  mri/norm.mgz 
    27. 

  27. # PVVolFileTimeStamp  2013/08/08 12:13:12 
    28. 

  28. # ExcludeSegId 0 
    29. 

  29. # Only reporting non-empty segmentations
    30. 

  30. # VoxelVolume_mm3 1 
    31. 

  31. # TableCol  1 ColHeader Index 
    32. 

  32. # TableCol  1 FieldName Index 
    33. 

  33. # TableCol  1 Units     NA 
    34. 

  34. # TableCol  2 ColHeader SegId 
    35. 

  35. # TableCol  2 FieldName Segmentation Id
    36. 

  36. # TableCol  2 Units     NA
    37. 

  37. # TableCol  3 ColHeader NVoxels 
    38. 

  38. # TableCol  3 FieldName Number of Voxels
    39. 

  39. # TableCol  3 Units     unitless
    40. 

  40. # TableCol  4 ColHeader Volume_mm3
    41. 

  41. # TableCol  4 FieldName Volume
    42. 

  42. # TableCol  4 Units     mm^3
    43. 

  43. # TableCol  5 ColHeader StructName
    44. 

  44. # TableCol  5 FieldName Structure Name
    45. 

  45. # TableCol  5 Units     NA
    46. 

  46. # TableCol  6 ColHeader normMean 
    47. 

  47. # TableCol  6 FieldName Intensity normMean
    48. 

  48. # TableCol  6 Units     MR
    49. 

  49. # TableCol  7 ColHeader normStdDev
    50. 

  50. # TableCol  7 FieldName Itensity normStdDev
    51. 

  51. # TableCol  7 Units     MR
    52. 

  52. # TableCol  8 ColHeader normMin
    53. 

  53. # TableCol  8 FieldName Intensity normMin
    54. 

  54. # TableCol  8 Units     MR
    55. 

  55. # TableCol  9 ColHeader normMax
    56. 

  56. # TableCol  9 FieldName Intensity normMax
    57. 

  57. # TableCol  9 Units     MR
    58. 

  58. # TableCol 10 ColHeader normRange
    59. 

  59. # TableCol 10 FieldName Intensity normRange
    60. 

  60. # TableCol 10 Units     MR
    61. 

  61. # NRows 70 
    62. 

  62. # NTableCols 10 
    63. 

  63. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    64. 

  64.   1 3001      2401     2401.1  wm-lh-bankssts                   103.7163     8.6800    70.0000   121.0000    51.0000 
    65. 

  65.   2 3002      2375     2375.3  wm-lh-caudalanteriorcingulate    100.8069     7.6659    55.0000   118.0000    63.0000 
    66. 

  66.   3 3003      8274     8273.7  wm-lh-caudalmiddlefrontal        100.0187     8.7622    62.0000   119.0000    57.0000 
    67. 

  67.   4 3005      2290     2290.4  wm-lh-cuneus                     101.2479     9.9258    71.0000   121.0000    50.0000 
    68. 

  68.   5 3006      1144     1144.0  wm-lh-entorhinal                  89.1019     9.1140    66.0000   114.0000    48.0000 
    69. 

  69.   6 3007      6688     6688.2  wm-lh-fusiform                    97.2127     9.5998    40.0000   120.0000    80.0000 
    70. 

  70.   7 3008      8820     8820.0  wm-lh-inferiorparietal           105.9915     9.6911    71.0000   126.0000    55.0000 
    71. 

  71.   8 3009      5663     5662.7  wm-lh-inferiortemporal            95.0417    10.8062    64.0000   119.0000    55.0000 
    72. 

  72.   9 3010      3875     3874.9  wm-lh-isthmuscingulate           103.2718     9.9689    37.0000   122.0000    85.0000 
    73. 

  73.  10 3011     11177    11177.0  wm-lh-lateraloccipital           101.1305    10.0495    40.0000   123.0000    83.0000 
    74. 

  74.  11 3012      6162     6161.9  wm-lh-lateralorbitofrontal        98.2311     9.6707    58.0000   122.0000    64.0000 
    75. 

  75.  12 3013      5083     5083.3  wm-lh-lingual                     94.5890     9.5017    25.0000   122.0000    97.0000 
    76. 

  76.  13 3014      2888     2888.2  wm-lh-medialorbitofrontal         91.1944    13.7905    20.0000   116.0000    96.0000 
    77. 

  77.  14 3015      5429     5429.0  wm-lh-middletemporal              95.6656    11.3076    62.0000   119.0000    57.0000 
    78. 

  78.  15 3016      1723     1722.9  wm-lh-parahippocampal             91.9402     8.8166    30.0000   121.0000    91.0000 
    79. 

  79.  16 3017      4399     4399.0  wm-lh-paracentral                101.0432     9.0713    72.0000   120.0000    48.0000 
    80. 

  80.  17 3018      3440     3439.6  wm-lh-parsopercularis             98.9590     8.8894    70.0000   121.0000    51.0000 
    81. 

  81.  18 3019       887      886.6  wm-lh-parsorbitalis               97.4334     9.7984    69.0000   119.0000    50.0000 
    82. 

  82.  19 3020      2573     2573.3  wm-lh-parstriangularis           102.7738     8.3970    75.0000   121.0000    46.0000 
    83. 

  83.  20 3021      2778     2777.5  wm-lh-pericalcarine               91.0411    15.8418     2.0000   114.0000   112.0000 
    84. 

  84.  21 3022      7555     7555.3  wm-lh-postcentral                 99.3619     9.4819    69.0000   125.0000    56.0000 
    85. 

  85.  22 3023      4034     4033.8  wm-lh-posteriorcingulate         104.1956     9.0932    38.0000   128.0000    90.0000 
    86. 

  86.  23 3024     14285    14285.3  wm-lh-precentral                 100.0285     8.5023    61.0000   121.0000    60.0000 
    87. 

  87.  24 3025      8485     8484.8  wm-lh-precuneus                  105.0526     9.1802    43.0000   123.0000    80.0000 
    88. 

  88.  25 3026      3030     3030.2  wm-lh-rostralanteriorcingulate    99.7634     9.8309    51.0000   118.0000    67.0000 
    89. 

  89.  26 3027     13786    13786.5  wm-lh-rostralmiddlefrontal        99.4707    10.1138    66.0000   119.0000    53.0000 
    90. 

  90.  27 3028     21732    21732.1  wm-lh-superiorfrontal             95.4228     9.8919    60.0000   118.0000    58.0000 
    91. 

  91.  28 3029     11851    11851.0  wm-lh-superiorparietal           107.0107     9.0067    74.0000   127.0000    53.0000 
    92. 

  92.  29 3030      8423     8423.2  wm-lh-superiortemporal            99.9462    10.4748    64.0000   122.0000    58.0000 
    93. 

  93.  30 3031      9609     9608.7  wm-lh-supramarginal              106.1454    10.4978    64.0000   129.0000    65.0000 
    94. 

  94.  31 3032       129      129.3  wm-lh-frontalpole                 85.7755     8.5679    69.0000   103.0000    34.0000 
    95. 

  95.  32 3033       652      652.0  wm-lh-temporalpole                87.3142     8.7622    67.0000   106.0000    39.0000 
    96. 

  96.  33 3034       837      837.1  wm-lh-transversetemporal         101.3162     7.3902    80.0000   116.0000    36.0000 
    97. 

  97.  34 3035      8294     8294.0  wm-lh-insula                      97.7706    11.6693    37.0000   126.0000    89.0000 
    98. 

  98.  35 4001      2773     2772.7  wm-rh-bankssts                   102.6226     8.3568    70.0000   119.0000    49.0000 
    99. 

  99.  36 4002      3157     3157.3  wm-rh-caudalanteriorcingulate    101.1698     6.7856    54.0000   118.0000    64.0000 
    100. 

  100.  37 4003      6362     6362.4  wm-rh-caudalmiddlefrontal         98.5984     9.0137    66.0000   116.0000    50.0000 
    101. 

  101.  38 4005      2601     2601.1  wm-rh-cuneus                     106.8401     8.7930    74.0000   124.0000    50.0000 
    102. 

  102.  39 4006       947      946.7  wm-rh-entorhinal                  84.8874     8.4489    62.0000   109.0000    47.0000 
    103. 

  103.  40 4007      5673     5672.8  wm-rh-fusiform                    95.5115     9.5576    40.0000   117.0000    77.0000 
    104. 

  104.  41 4008     12399    12398.5  wm-rh-inferiorparietal           106.3420     9.5439    67.0000   128.0000    61.0000 
    105. 

  105.  42 4009      6300     6300.2  wm-rh-inferiortemporal            93.0176    10.0186    60.0000   116.0000    56.0000 
    106. 

  106.  43 4010      3679     3678.7  wm-rh-isthmuscingulate           102.6369     9.5115    28.0000   123.0000    95.0000 
    107. 

  107.  44 4011      8247     8246.8  wm-rh-lateraloccipital           102.0261     9.3049    72.0000   124.0000    52.0000 
    108. 

  108.  45 4012      5914     5913.5  wm-rh-lateralorbitofrontal       102.1351    11.4620    33.0000   125.0000    92.0000 
    109. 

  109.  46 4013      5853     5852.8  wm-rh-lingual                     95.8287     9.7039    28.0000   121.0000    93.0000 
    110. 

  110.  47 4014      3345     3344.7  wm-rh-medialorbitofrontal         97.8935    11.6569    51.0000   122.0000    71.0000 
    111. 

  111.  48 4015      6047     6047.5  wm-rh-middletemporal              94.0718    10.5361    61.0000   116.0000    55.0000 
    112. 

  112.  49 4016      1495     1495.3  wm-rh-parahippocampal             92.3645     8.1794    68.0000   117.0000    49.0000 
    113. 

  113.  50 4017      4650     4650.0  wm-rh-paracentral                 99.5230     8.6306    68.0000   120.0000    52.0000 
    114. 

  114.  51 4018      2558     2558.1  wm-rh-parsopercularis             97.6796     8.6976    70.0000   117.0000    47.0000 
    115. 

  115.  52 4019      1085     1084.8  wm-rh-parsorbitalis               99.9461    10.4954    73.0000   122.0000    49.0000 
    116. 

  116.  53 4020      3608     3607.6  wm-rh-parstriangularis           101.5442     9.0085    70.0000   129.0000    59.0000 
    117. 

  117.  54 4021      3980     3979.8  wm-rh-pericalcarine               99.4837    10.3748    69.0000   122.0000    53.0000 
    118. 

  118.  55 4022      8215     8214.6  wm-rh-postcentral                 98.4167     9.0958    70.0000   121.0000    51.0000 
    119. 

  119.  56 4023      4503     4503.0  wm-rh-posteriorcingulate         102.7252     8.6073    44.0000   124.0000    80.0000 
    120. 

  120.  57 4024     13475    13474.9  wm-rh-precentral                  98.0472     7.9187    58.0000   118.0000    60.0000 
    121. 

  121.  58 4025     10053    10053.1  wm-rh-precuneus                  105.2799     8.7614    45.0000   126.0000    81.0000 
    122. 

  122.  59 4026      2225     2224.9  wm-rh-rostralanteriorcingulate   100.1269    12.1327    15.0000   121.0000   106.0000 
    123. 

  123.  60 4027     15609    15609.2  wm-rh-rostralmiddlefrontal       100.4136     9.9297    63.0000   124.0000    61.0000 
    124. 

  124.  61 4028     20723    20723.5  wm-rh-superiorfrontal             95.0868     9.6505    63.0000   117.0000    54.0000 
    125. 

  125.  62 4029      9763     9762.6  wm-rh-superiorparietal           106.2321     8.7703    72.0000   125.0000    53.0000 
    126. 

  126.  63 4030      7601     7601.2  wm-rh-superiortemporal            96.6092     9.8060    66.0000   120.0000    54.0000 
    127. 

  127.  64 4031      9851     9851.1  wm-rh-supramarginal              103.9178     9.7606    70.0000   128.0000    58.0000 
    128. 

  128.  65 4032       333      333.3  wm-rh-frontalpole                 91.3199    10.6080    64.0000   112.0000    48.0000 
    129. 

  129.  66 4033       545      545.2  wm-rh-temporalpole                81.0113     8.7148    62.0000   100.0000    38.0000 
    130. 

  130.  67 4034       601      600.9  wm-rh-transversetemporal          97.8313     7.8170    73.0000   113.0000    40.0000 
    131. 

  131.  68 4035      7679     7679.1  wm-rh-insula                      93.7544    11.0588    47.0000   117.0000    70.0000 
    132. 

  132.  69 5001     32873    32873.5  Left-UnsegmentedWhiteMatter      102.7434    10.6178     9.0000   124.0000   115.0000 
    133. 

  133.  70 5002     32659    32658.5  Right-UnsegmentedWhiteMatter     101.7413    10.0403    10.0000   123.0000   113.0000 
    134.