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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub016 --surf-wm-vol --ctab /opt/freesurfer/5.3.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake6
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub016
    14. 

  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 253268.932972, mm^3
    15. 

  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 258556.463047, mm^3
    16. 

  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 511825.396019, mm^3
    17. 

  17. # Measure Mask, MaskVol, Mask Volume, 1848686.000000, mm^3
    18. 

  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1402840.101704, mm^3
    19. 

  19. # SegVolFile mri/wmparc.mgz 
    20. 

  20. # SegVolFileTimeStamp  2013/08/09 00:52:25 
    21. 

  21. # ColorTable /opt/freesurfer/5.3.0/WMParcStatsLUT.txt 
    22. 

  22. # ColorTableTimeStamp 2013/05/13 23:21:15 
    23. 

  23. # InVolFile  mri/norm.mgz 
    24. 

  24. # InVolFileTimeStamp  2013/08/08 12:21:15 
    25. 

  25. # InVolFrame 0 
    26. 

  26. # PVVolFile  mri/norm.mgz 
    27. 

  27. # PVVolFileTimeStamp  2013/08/08 12:21:15 
    28. 

  28. # ExcludeSegId 0 
    29. 

  29. # Only reporting non-empty segmentations
    30. 

  30. # VoxelVolume_mm3 1 
    31. 

  31. # TableCol  1 ColHeader Index 
    32. 

  32. # TableCol  1 FieldName Index 
    33. 

  33. # TableCol  1 Units     NA 
    34. 

  34. # TableCol  2 ColHeader SegId 
    35. 

  35. # TableCol  2 FieldName Segmentation Id
    36. 

  36. # TableCol  2 Units     NA
    37. 

  37. # TableCol  3 ColHeader NVoxels 
    38. 

  38. # TableCol  3 FieldName Number of Voxels
    39. 

  39. # TableCol  3 Units     unitless
    40. 

  40. # TableCol  4 ColHeader Volume_mm3
    41. 

  41. # TableCol  4 FieldName Volume
    42. 

  42. # TableCol  4 Units     mm^3
    43. 

  43. # TableCol  5 ColHeader StructName
    44. 

  44. # TableCol  5 FieldName Structure Name
    45. 

  45. # TableCol  5 Units     NA
    46. 

  46. # TableCol  6 ColHeader normMean 
    47. 

  47. # TableCol  6 FieldName Intensity normMean
    48. 

  48. # TableCol  6 Units     MR
    49. 

  49. # TableCol  7 ColHeader normStdDev
    50. 

  50. # TableCol  7 FieldName Itensity normStdDev
    51. 

  51. # TableCol  7 Units     MR
    52. 

  52. # TableCol  8 ColHeader normMin
    53. 

  53. # TableCol  8 FieldName Intensity normMin
    54. 

  54. # TableCol  8 Units     MR
    55. 

  55. # TableCol  9 ColHeader normMax
    56. 

  56. # TableCol  9 FieldName Intensity normMax
    57. 

  57. # TableCol  9 Units     MR
    58. 

  58. # TableCol 10 ColHeader normRange
    59. 

  59. # TableCol 10 FieldName Intensity normRange
    60. 

  60. # TableCol 10 Units     MR
    61. 

  61. # NRows 70 
    62. 

  62. # NTableCols 10 
    63. 

  63. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    64. 

  64.   1 3001      2452     2451.5  wm-lh-bankssts                   103.7476     9.1529    74.0000   121.0000    47.0000 
    65. 

  65.   2 3002      3946     3945.6  wm-lh-caudalanteriorcingulate     98.3196     7.9647    55.0000   115.0000    60.0000 
    66. 

  66.   3 3003      6079     6078.8  wm-lh-caudalmiddlefrontal         96.7540     8.8731    62.0000   117.0000    55.0000 
    67. 

  67.   4 3005      2961     2961.5  wm-lh-cuneus                     102.3871     9.1821    75.0000   120.0000    45.0000 
    68. 

  68.   5 3006      1284     1284.4  wm-lh-entorhinal                  89.9506     8.6030    62.0000   114.0000    52.0000 
    69. 

  69.   6 3007      7966     7966.0  wm-lh-fusiform                    96.4425     9.3724    55.0000   120.0000    65.0000 
    70. 

  70.   7 3008     11257    11256.8  wm-lh-inferiorparietal           107.4686     9.7821    71.0000   128.0000    57.0000 
    71. 

  71.   8 3009      9263     9263.0  wm-lh-inferiortemporal            95.1039    10.8380    60.0000   120.0000    60.0000 
    72. 

  72.   9 3010      4640     4639.5  wm-lh-isthmuscingulate           101.3315     8.3655    26.0000   122.0000    96.0000 
    73. 

  73.  10 3011      9338     9337.7  wm-lh-lateraloccipital           100.0766    10.2557    65.0000   122.0000    57.0000 
    74. 

  74.  11 3012      7724     7724.1  wm-lh-lateralorbitofrontal        95.0872    10.2243    43.0000   119.0000    76.0000 
    75. 

  75.  12 3013      6364     6364.0  wm-lh-lingual                     92.9713    11.0672    27.0000   122.0000    95.0000 
    76. 

  76.  13 3014      3724     3724.2  wm-lh-medialorbitofrontal         88.9152    14.3660    23.0000   117.0000    94.0000 
    77. 

  77.  14 3015      7293     7293.1  wm-lh-middletemporal              98.1245    10.4628    65.0000   122.0000    57.0000 
    78. 

  78.  15 3016      2142     2141.5  wm-lh-parahippocampal             92.3128     8.4169    67.0000   116.0000    49.0000 
    79. 

  79.  16 3017      3707     3707.2  wm-lh-paracentral                 99.6707     8.6822    60.0000   121.0000    61.0000 
    80. 

  80.  17 3018      4535     4534.9  wm-lh-parsopercularis             98.3013     8.4401    60.0000   116.0000    56.0000 
    81. 

  81.  18 3019      1171     1171.1  wm-lh-parsorbitalis               97.7384    10.2104    70.0000   119.0000    49.0000 
    82. 

  82.  19 3020      3172     3171.8  wm-lh-parstriangularis           100.9160     8.8982    71.0000   118.0000    47.0000 
    83. 

  83.  20 3021      4592     4591.9  wm-lh-pericalcarine               97.7080    10.2741    46.0000   124.0000    78.0000 
    84. 

  84.  21 3022      7609     7609.0  wm-lh-postcentral                 99.1053     8.9576    70.0000   120.0000    50.0000 
    85. 

  85.  22 3023      5355     5355.2  wm-lh-posteriorcingulate         100.9065     9.6900    32.0000   121.0000    89.0000 
    86. 

  86.  23 3024     14215    14214.8  wm-lh-precentral                  98.6149     7.8052    67.0000   118.0000    51.0000 
    87. 

  87.  24 3025     11123    11122.7  wm-lh-precuneus                  104.5384     9.3327    51.0000   125.0000    74.0000 
    88. 

  88.  25 3026      2619     2619.2  wm-lh-rostralanteriorcingulate    95.1337    10.5784    55.0000   122.0000    67.0000 
    89. 

  89.  26 3027     12685    12685.4  wm-lh-rostralmiddlefrontal        98.4469    10.2123    55.0000   121.0000    66.0000 
    90. 

  90.  27 3028     20937    20937.3  wm-lh-superiorfrontal             95.2650     9.4194    34.0000   118.0000    84.0000 
    91. 

  91.  28 3029     14351    14350.9  wm-lh-superiorparietal           106.4647     8.8437    64.0000   130.0000    66.0000 
    92. 

  92.  29 3030      9641     9641.1  wm-lh-superiortemporal           100.3857    10.0446    60.0000   122.0000    62.0000 
    93. 

  93.  30 3031     10236    10236.1  wm-lh-supramarginal              105.2133     9.8970    67.0000   127.0000    60.0000 
    94. 

  94.  31 3032       151      151.3  wm-lh-frontalpole                 83.0988     8.3705    67.0000   104.0000    37.0000 
    95. 

  95.  32 3033       731      730.6  wm-lh-temporalpole                85.2514     8.8402    67.0000   107.0000    40.0000 
    96. 

  96.  33 3034       929      928.5  wm-lh-transversetemporal          98.3184     6.8454    77.0000   112.0000    35.0000 
    97. 

  97.  34 3035     10118    10118.5  wm-lh-insula                      94.6302    11.6055    32.0000   122.0000    90.0000 
    98. 

  98.  35 4001      2831     2831.3  wm-rh-bankssts                   105.8264     7.9620    78.0000   122.0000    44.0000 
    99. 

  99.  36 4002      2638     2637.6  wm-rh-caudalanteriorcingulate     97.6922     6.8531    40.0000   111.0000    71.0000 
    100. 

  100.  37 4003      5731     5730.5  wm-rh-caudalmiddlefrontal         95.0785     9.4460    39.0000   114.0000    75.0000 
    101. 

  101.  38 4005      3045     3045.0  wm-rh-cuneus                     102.5532     9.2879    74.0000   121.0000    47.0000 
    102. 

  102.  39 4006      1034     1033.8  wm-rh-entorhinal                  85.3620     8.3996    60.0000   107.0000    47.0000 
    103. 

  103.  40 4007      7612     7612.0  wm-rh-fusiform                    94.2017    10.1836    11.0000   117.0000   106.0000 
    104. 

  104.  41 4008     13814    13813.7  wm-rh-inferiorparietal           107.5838     9.6945    74.0000   129.0000    55.0000 
    105. 

  105.  42 4009      8415     8414.7  wm-rh-inferiortemporal            92.5752    10.4164    54.0000   117.0000    63.0000 
    106. 

  106.  43 4010      5231     5230.6  wm-rh-isthmuscingulate            99.9836     9.8221    12.0000   123.0000   111.0000 
    107. 

  107.  44 4011      9901     9900.6  wm-rh-lateraloccipital            98.3900     9.9967    67.0000   124.0000    57.0000 
    108. 

  108.  45 4012      7480     7480.2  wm-rh-lateralorbitofrontal        98.6429    10.8491    56.0000   122.0000    66.0000 
    109. 

  109.  46 4013      6713     6713.0  wm-rh-lingual                     92.9361    10.8681    39.0000   121.0000    82.0000 
    110. 

  110.  47 4014      3751     3750.9  wm-rh-medialorbitofrontal         94.2856    11.1895    62.0000   120.0000    58.0000 
    111. 

  111.  48 4015      7945     7944.8  wm-rh-middletemporal              97.4538    10.2255    64.0000   122.0000    58.0000 
    112. 

  112.  49 4016      1995     1995.0  wm-rh-parahippocampal             90.2250     8.2643    61.0000   112.0000    51.0000 
    113. 

  113.  50 4017      6093     6093.3  wm-rh-paracentral                101.3376     8.7180    63.0000   125.0000    62.0000 
    114. 

  114.  51 4018      5347     5346.6  wm-rh-parsopercularis             97.7468     8.7600    63.0000   116.0000    53.0000 
    115. 

  115.  52 4019      1301     1301.4  wm-rh-parsorbitalis               95.7808    11.3353    66.0000   119.0000    53.0000 
    116. 

  116.  53 4020      4404     4404.2  wm-rh-parstriangularis           100.3530     9.1890    49.0000   118.0000    69.0000 
    117. 

  117.  54 4021      4362     4361.6  wm-rh-pericalcarine               98.1868     9.4449    62.0000   120.0000    58.0000 
    118. 

  118.  55 4022      8380     8379.9  wm-rh-postcentral                 99.5537     8.8767    63.0000   120.0000    57.0000 
    119. 

  119.  56 4023      4716     4716.1  wm-rh-posteriorcingulate          99.5961     9.6535    37.0000   122.0000    85.0000 
    120. 

  120.  57 4024     14818    14817.6  wm-rh-precentral                  99.3086     7.6930    60.0000   119.0000    59.0000 
    121. 

  121.  58 4025     10880    10879.7  wm-rh-precuneus                  105.2309     9.3363    59.0000   125.0000    66.0000 
    122. 

  122.  59 4026      2748     2747.7  wm-rh-rostralanteriorcingulate    99.0155    14.3591    26.0000   119.0000    93.0000 
    123. 

  123.  60 4027     12665    12665.4  wm-rh-rostralmiddlefrontal        97.6405    11.1432    60.0000   121.0000    61.0000 
    124. 

  124.  61 4028     22764    22764.0  wm-rh-superiorfrontal             95.0415     9.3175    56.0000   117.0000    61.0000 
    125. 

  125.  62 4029     11638    11637.7  wm-rh-superiorparietal           106.7154     9.3664    31.0000   126.0000    95.0000 
    126. 

  126.  63 4030      7994     7994.2  wm-rh-superiortemporal            98.0405    10.2521    64.0000   119.0000    55.0000 
    127. 

  127.  64 4031      9586     9586.3  wm-rh-supramarginal              105.9253     9.8888    57.0000   126.0000    69.0000 
    128. 

  128.  65 4032       256      256.3  wm-rh-frontalpole                 82.3407     8.9470    64.0000   103.0000    39.0000 
    129. 

  129.  66 4033       654      653.6  wm-rh-temporalpole                84.7311     9.2002    62.0000   107.0000    45.0000 
    130. 

  130.  67 4034       747      747.1  wm-rh-transversetemporal          99.0801     7.3970    79.0000   116.0000    37.0000 
    131. 

  131.  68 4035     10469    10468.9  wm-rh-insula                      91.1648    12.3492    18.0000   118.0000   100.0000 
    132. 

  132.  69 5001     30700    30700.1  Left-UnsegmentedWhiteMatter       99.7392    10.9461    12.0000   126.0000   114.0000 
    133. 

  133.  70 5002     32089    32089.3  Right-UnsegmentedWhiteMatter      99.5018    10.6418     6.0000   127.0000   121.0000 
    134.