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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub016
- # sysname Linux
- # hostname snake6
- # machine x86_64
- # user fkaule
- # anatomy_type volume
- #
- # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- # subjectname sub016
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1369384.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1350669.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1351917.170853, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 306260.489922, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 309907.284912, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 616167.774834, mm^3
- # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 253268.932972, mm^3
- # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 258556.463047, mm^3
- # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 511825.396019, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 75858.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 808742.774834, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1220313.170853, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1205373.170853, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1202684.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1848686.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.976151, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.317817, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 24, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 17, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 41, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1402840.101704, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2013/08/08 17:25:11
- # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2013/05/13 23:21:15
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2013/08/08 12:21:15
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2013/08/08 12:21:15
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 5205 5204.5 Left-Lateral-Ventricle 19.1516 13.8942 0.0000 102.0000 102.0000
- 2 5 587 587.5 Left-Inf-Lat-Vent 33.1399 15.6754 0.0000 80.0000 80.0000
- 3 7 15848 15847.5 Left-Cerebellum-White-Matter 88.4540 7.8349 20.0000 120.0000 100.0000
- 4 8 57326 57326.2 Left-Cerebellum-Cortex 59.7731 10.3224 6.0000 116.0000 110.0000
- 5 10 9388 9388.2 Left-Thalamus-Proper 81.7242 10.2129 41.0000 109.0000 68.0000
- 6 11 5055 5055.2 Left-Caudate 64.1947 8.9304 19.0000 101.0000 82.0000
- 7 12 7345 7345.4 Left-Putamen 70.3106 9.8580 4.0000 98.0000 94.0000
- 8 13 2485 2485.0 Left-Pallidum 82.6291 8.0004 39.0000 105.0000 66.0000
- 9 14 878 878.5 3rd-Ventricle 26.9856 15.5734 0.0000 72.0000 72.0000
- 10 15 1789 1788.6 4th-Ventricle 21.4241 12.3424 0.0000 84.0000 84.0000
- 11 16 25619 25619.2 Brain-Stem 82.9642 9.9129 8.0000 113.0000 105.0000
- 12 17 5163 5163.2 Left-Hippocampus 62.1795 9.6588 15.0000 112.0000 97.0000
- 13 18 1837 1837.2 Left-Amygdala 60.7582 7.8965 33.0000 89.0000 56.0000
- 14 24 1269 1268.6 CSF 32.1254 16.8710 0.0000 87.0000 87.0000
- 15 26 926 926.4 Left-Accumbens-area 59.5872 6.7179 36.0000 97.0000 61.0000
- 16 28 4287 4287.0 Left-VentralDC 85.3993 10.9132 26.0000 115.0000 89.0000
- 17 30 252 252.2 Left-vessel 40.2842 25.1459 2.0000 89.0000 87.0000
- 18 31 1120 1119.7 Left-choroid-plexus 47.2067 15.9533 1.0000 97.0000 96.0000
- 19 43 6175 6175.5 Right-Lateral-Ventricle 16.5201 12.4709 0.0000 98.0000 98.0000
- 20 44 417 417.3 Right-Inf-Lat-Vent 24.5168 15.4116 0.0000 73.0000 73.0000
- 21 46 16511 16510.8 Right-Cerebellum-White-Matter 87.1905 7.5551 10.0000 114.0000 104.0000
- 22 47 60517 60517.3 Right-Cerebellum-Cortex 58.8526 10.0703 7.0000 116.0000 109.0000
- 23 49 8712 8711.6 Right-Thalamus-Proper 77.9504 10.3960 25.0000 108.0000 83.0000
- 24 50 6116 6115.6 Right-Caudate 63.3101 10.1455 6.0000 110.0000 104.0000
- 25 51 6870 6870.3 Right-Putamen 70.4060 7.8161 7.0000 103.0000 96.0000
- 26 52 2510 2509.7 Right-Pallidum 82.8095 7.3715 25.0000 104.0000 79.0000
- 27 53 4969 4968.7 Right-Hippocampus 59.0894 10.0695 12.0000 105.0000 93.0000
- 28 54 2274 2273.6 Right-Amygdala 59.8629 7.6924 31.0000 87.0000 56.0000
- 29 58 1003 1003.5 Right-Accumbens-area 63.7232 8.1833 35.0000 93.0000 58.0000
- 30 60 4570 4569.6 Right-VentralDC 84.8243 11.4041 28.0000 116.0000 88.0000
- 31 62 123 123.4 Right-vessel 56.6397 16.4090 17.0000 84.0000 67.0000
- 32 63 1462 1462.2 Right-choroid-plexus 50.3591 14.6740 14.0000 104.0000 90.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 3867 3866.6 WM-hypointensities 81.0530 12.6045 6.0000 113.0000 107.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 39 39.2 non-WM-hypointensities 68.4419 15.5675 38.0000 103.0000 65.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 301 300.6 Optic-Chiasm 71.7566 21.2141 5.0000 110.0000 105.0000
- 41 251 857 856.6 CC_Posterior 103.8525 6.5331 78.0000 121.0000 43.0000
- 42 252 412 411.7 CC_Mid_Posterior 99.9240 7.6721 69.0000 117.0000 48.0000
- 43 253 428 427.9 CC_Central 95.5550 5.6556 71.0000 112.0000 41.0000
- 44 254 500 499.6 CC_Mid_Anterior 96.3929 6.0654 67.0000 111.0000 44.0000
- 45 255 905 904.6 CC_Anterior 100.7684 7.4772 28.0000 124.0000 96.0000
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