recon-all.env 3.5 KB

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  1. Thu Aug 8 10:54:16 CEST 2013
  2. FREESURFER_HOME /opt/freesurfer/5.3.0
  3. Actual FREESURFER_HOME /opt/freesurfer/5.3.0
  4. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016
  5. setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
  6. -i /home/data/exppsy/forrest_gump/openfmri.org/sub016/anatomy/highres001.nii.gz -cw256 -all -T2 /home/data/exppsy/forrest_gump/openfmri.org/sub016/anatomy/other/t2w001.nii.gz -T2pial -subjid sub016 -sd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
  7. Linux snake6 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
  8. cputime unlimited
  9. filesize unlimited
  10. datasize unlimited
  11. stacksize unlimited
  12. coredumpsize 0 kbytes
  13. memoryuse unlimited
  14. vmemoryuse unlimited
  15. descriptors 1024
  16. memorylocked 64 kbytes
  17. maxproc unlimited
  18. maxlocks unlimited
  19. maxsignal 16382
  20. maxmessage 819200
  21. maxnice 0
  22. maxrtprio 0
  23. maxrttime unlimited
  24. POSSUMDIR=/usr/share/fsl/5.0
  25. LANGUAGE=en_US:en
  26. USER=fkaule
  27. SSH_CLIENT=141.44.98.28 55777 22
  28. MAIL=/var/mail/fkaule
  29. MSM_PRODUCT=MSM
  30. LD_LIBRARY_PATH=/usr/lib/fsl/5.0
  31. SHLVL=2
  32. _CONDOR_ANCESTOR_18542=18545:1375952055:2393141360
  33. OLDPWD=/home
  34. CONDOR_ID=40988.0
  35. _CONDOR_MACHINE_AD=/var/lib/condor/execute/dir_18542/.machine.ad
  36. HOME=/home/fkaule
  37. SSH_TTY=/dev/pts/10
  38. XDG_SESSION_COOKIE=fce1b605eb98d6b0f3e0b7ad000005bf-1375944552.163769-1862872819
  39. MINC_LIB_DIR=/opt/freesurfer/5.3.0/mni/lib
  40. FREESURFER_HOME=/opt/freesurfer/5.3.0
  41. MINC_BIN_DIR=/opt/freesurfer/5.3.0/mni/bin
  42. _CONDOR_JOB_PIDS=
  43. FSLDIR=/usr/share/fsl/5.0
  44. CONDOR_PARENT_ID=medusa:19365:1375951932
  45. FUNCTIONALS_DIR=/opt/freesurfer/5.3.0/sessions
  46. TMPDIR=/var/lib/condor/execute/dir_18542
  47. _CONDOR_JOB_IWD=/home/data/exppsy/forrest_gump
  48. LOGNAME=fkaule
  49. FSLMULTIFILEQUIT=TRUE
  50. FSLTCLSH=/usr/bin/tclsh
  51. TEMP=/var/lib/condor/execute/dir_18542
  52. _=/usr/bin/ipython
  53. FSFAST_HOME=/opt/freesurfer/5.3.0/fsfast
  54. TERM=xterm
  55. FSLMACHINELIST=
  56. _JAVA_OPTIONS=-Xmx256m
  57. PATH=/opt/freesurfer/5.3.0/bin:/opt/freesurfer/5.3.0/fsfast/bin:/opt/freesurfer/5.3.0/tktools:/opt/freesurfer/5.3.0/mni/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/usr/lib/fsl/5.0
  58. OS=Linux
  59. _CONDOR_DAGMAN_LOG=/home/data/exppsy/forrest_gump/pipe_tmp/metaflow_fs/batch/workflow-f6ef0e4c-d7a4-4a37-a0a9-c223ed5b1f93.dag.dagman.out
  60. PERL5LIB=/opt/freesurfer/5.3.0/mni/lib/perl5/5.8.5
  61. FSLOUTPUTTYPE=NIFTI_GZ
  62. _CONDOR_ANCESTOR_2411=2412:1372249931:647671624
  63. DISPLAY=:1
  64. MNI_DIR=/opt/freesurfer/5.3.0/mni
  65. _CONDOR_ANCESTOR_2412=18542:1375952055:2787408193
  66. MNI_PERL5LIB=/opt/freesurfer/5.3.0/mni/lib/perl5/5.8.5
  67. LANG=C
  68. LOCAL_DIR=/opt/freesurfer/5.3.0/local
  69. FSLBROWSER=/etc/alternatives/x-www-browser
  70. TMP=/var/lib/condor/execute/dir_18542
  71. FS_OVERRIDE=0
  72. SSH_AUTH_SOCK=/tmp/ssh-YmVJB30651/agent.30651
  73. FSLWISH=/usr/bin/wish
  74. FSLREMOTECALL=
  75. SHELL=/bin/bash
  76. _CONDOR_ANCESTOR_7302=7421:1360325385:4217277112
  77. _CONDOR_SLOT=slot1_8
  78. MSM_HOME=/usr/local/MegaRAID Storage Manager
  79. _CONDOR_ANCESTOR_7421=19365:1375951932:2149059971
  80. FMRI_ANALYSIS_DIR=/opt/freesurfer/5.3.0/fsfast
  81. FSF_OUTPUT_FORMAT=nii.gz
  82. MNI_DATAPATH=/opt/freesurfer/5.3.0/mni/data
  83. PWD=/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub016
  84. SSH_CONNECTION=141.44.98.28 55777 141.44.17.54 22
  85. SUBJECTS_DIR=/home/data/exppsy/forrest_gump/openfmri.org/freesurfer
  86. _CONDOR_MAX_DAGMAN_LOG=0
  87. _CONDOR_JOB_AD=/var/lib/condor/execute/dir_18542/.job.ad
  88. FSLLOCKDIR=
  89. _CONDOR_SCRATCH_DIR=/var/lib/condor/execute/dir_18542
  90. FIX_VERTEX_AREA=
  91. NLSPATH=/usr/share/locale/%L/LC_MESSAGES/%N.cat
  92. HOSTTYPE=x86_64-linux
  93. VENDOR=unknown
  94. OSTYPE=linux
  95. MACHTYPE=x86_64
  96. GROUP=fkaule
  97. HOST=snake6
  98. REMOTEHOST=
  99. OMP_NUM_THREADS=1
  100. REQUIRE_FS_MATCH=0