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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub014
- # sysname Linux
- # hostname snake5
- # machine x86_64
- # user fkaule
- # anatomy_type volume
- #
- # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- # subjectname sub014
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 980324.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 964414.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 966930.431671, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 225009.029586, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 226318.400812, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 451327.430398, mm^3
- # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 178818.696786, mm^3
- # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 180365.304487, mm^3
- # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 359184.001273, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 54932.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 585245.430398, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 878905.431671, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 866225.431671, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 862813.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1401220.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.940939, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.344926, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 9, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 10, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 19, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1041856.577900, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2013/08/08 18:45:13
- # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2013/05/13 23:21:15
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2013/08/08 12:06:54
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2013/08/08 12:06:54
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 4664 4664.3 Left-Lateral-Ventricle 18.8335 14.1464 0.0000 118.0000 118.0000
- 2 5 364 363.9 Left-Inf-Lat-Vent 28.3000 15.2285 1.0000 76.0000 75.0000
- 3 7 11686 11685.9 Left-Cerebellum-White-Matter 87.9136 7.2313 33.0000 112.0000 79.0000
- 4 8 39826 39826.4 Left-Cerebellum-Cortex 57.3034 10.4733 5.0000 92.0000 87.0000
- 5 10 6214 6214.0 Left-Thalamus-Proper 85.2573 10.4002 32.0000 116.0000 84.0000
- 6 11 3553 3553.4 Left-Caudate 66.8574 9.1516 30.0000 111.0000 81.0000
- 7 12 5445 5444.7 Left-Putamen 74.4696 8.4981 25.0000 101.0000 76.0000
- 8 13 1861 1860.8 Left-Pallidum 86.9861 7.6480 43.0000 108.0000 65.0000
- 9 14 669 668.6 3rd-Ventricle 25.1737 15.6189 1.0000 62.0000 61.0000
- 10 15 1748 1748.5 4th-Ventricle 13.8642 10.3085 0.0000 57.0000 57.0000
- 11 16 18512 18512.1 Brain-Stem 82.6645 10.0824 0.0000 122.0000 122.0000
- 12 17 3996 3996.1 Left-Hippocampus 59.8892 9.7273 12.0000 114.0000 102.0000
- 13 18 1581 1581.3 Left-Amygdala 59.2808 7.8769 34.0000 86.0000 52.0000
- 14 24 962 962.1 CSF 29.3699 16.6758 2.0000 84.0000 82.0000
- 15 26 797 797.4 Left-Accumbens-area 61.3001 6.7017 43.0000 93.0000 50.0000
- 16 28 3309 3308.8 Left-VentralDC 91.6132 11.6644 44.0000 121.0000 77.0000
- 17 30 42 42.2 Left-vessel 59.3617 17.8587 17.0000 87.0000 70.0000
- 18 31 1022 1021.9 Left-choroid-plexus 48.6352 17.0765 8.0000 105.0000 97.0000
- 19 43 4733 4733.0 Right-Lateral-Ventricle 17.3569 13.0368 0.0000 80.0000 80.0000
- 20 44 559 558.6 Right-Inf-Lat-Vent 24.0285 15.3523 0.0000 77.0000 77.0000
- 21 46 11877 11876.5 Right-Cerebellum-White-Matter 86.4143 6.9553 5.0000 108.0000 103.0000
- 22 47 41025 41024.7 Right-Cerebellum-Cortex 56.8036 10.2702 3.0000 95.0000 92.0000
- 23 49 6317 6316.7 Right-Thalamus-Proper 80.3419 10.7278 21.0000 109.0000 88.0000
- 24 50 3841 3841.3 Right-Caudate 66.1185 9.6484 27.0000 109.0000 82.0000
- 25 51 5123 5123.4 Right-Putamen 75.3367 7.9973 28.0000 99.0000 71.0000
- 26 52 1473 1473.0 Right-Pallidum 89.9575 6.2676 59.0000 107.0000 48.0000
- 27 53 3811 3810.6 Right-Hippocampus 57.0273 10.0331 7.0000 99.0000 92.0000
- 28 54 1812 1812.1 Right-Amygdala 60.3729 7.5615 38.0000 89.0000 51.0000
- 29 58 643 643.0 Right-Accumbens-area 64.5592 7.9202 32.0000 95.0000 63.0000
- 30 60 3504 3504.2 Right-VentralDC 88.4125 12.6499 28.0000 123.0000 95.0000
- 31 62 63 62.7 Right-vessel 56.9394 15.2617 25.0000 88.0000 63.0000
- 32 63 1388 1388.0 Right-choroid-plexus 52.4847 16.2357 7.0000 105.0000 98.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 791 791.3 WM-hypointensities 76.7645 14.1096 13.0000 110.0000 97.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 14 14.4 non-WM-hypointensities 65.1333 14.1162 39.0000 83.0000 44.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 216 216.1 Optic-Chiasm 70.6132 20.7438 9.0000 108.0000 99.0000
- 41 251 728 728.3 CC_Posterior 109.6879 7.1498 69.0000 125.0000 56.0000
- 42 252 310 310.4 CC_Mid_Posterior 102.5429 12.5587 34.0000 119.0000 85.0000
- 43 253 332 332.3 CC_Central 100.1942 9.0708 65.0000 115.0000 50.0000
- 44 254 328 327.8 CC_Mid_Anterior 101.3265 6.5286 80.0000 112.0000 32.0000
- 45 255 719 718.6 CC_Anterior 102.9274 8.5131 38.0000 119.0000 81.0000
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