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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub012
- # sysname Linux
- # hostname snake5
- # machine x86_64
- # user fkaule
- # anatomy_type volume
- #
- # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- # subjectname sub012
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1200459.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1179649.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1183524.760047, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 267231.800003, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 267883.270218, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 535115.070221, mm^3
- # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 233590.157124, mm^3
- # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 235054.532701, mm^3
- # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 468644.689825, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 60860.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 689163.070221, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1082457.760047, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1065489.760047, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1060621.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1644994.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.998824, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.368693, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 13, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 6, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 19, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1201872.495286, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2013/08/08 17:57:22
- # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2013/05/13 23:21:15
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2013/08/08 12:18:37
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2013/08/08 12:18:37
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 7911 7911.5 Left-Lateral-Ventricle 14.6024 12.6794 0.0000 89.0000 89.0000
- 2 5 427 427.3 Left-Inf-Lat-Vent 35.3433 14.8417 0.0000 82.0000 82.0000
- 3 7 13053 13052.8 Left-Cerebellum-White-Matter 86.7404 7.4364 19.0000 111.0000 92.0000
- 4 8 46256 46256.0 Left-Cerebellum-Cortex 57.0574 11.3160 1.0000 99.0000 98.0000
- 5 10 7766 7766.2 Left-Thalamus-Proper 81.0390 9.8040 34.0000 109.0000 75.0000
- 6 11 3772 3772.3 Left-Caudate 66.3424 9.5055 32.0000 97.0000 65.0000
- 7 12 5686 5685.9 Left-Putamen 73.2929 8.8956 31.0000 106.0000 75.0000
- 8 13 1830 1829.8 Left-Pallidum 86.6870 6.6529 62.0000 108.0000 46.0000
- 9 14 952 951.6 3rd-Ventricle 26.4400 15.6050 0.0000 70.0000 70.0000
- 10 15 2193 2192.8 4th-Ventricle 16.8689 11.4583 0.0000 76.0000 76.0000
- 11 16 21390 21390.1 Brain-Stem 84.6126 10.3168 0.0000 116.0000 116.0000
- 12 17 3747 3746.7 Left-Hippocampus 60.6417 9.9088 22.0000 109.0000 87.0000
- 13 18 1467 1466.9 Left-Amygdala 60.0085 8.2074 32.0000 90.0000 58.0000
- 14 24 888 887.8 CSF 30.2806 13.6037 4.0000 71.0000 67.0000
- 15 26 864 864.2 Left-Accumbens-area 62.0751 6.9609 40.0000 88.0000 48.0000
- 16 28 4232 4231.5 Left-VentralDC 87.1341 11.0365 15.0000 116.0000 101.0000
- 17 30 75 74.7 Left-vessel 60.9750 18.2410 16.0000 97.0000 81.0000
- 18 31 1422 1421.7 Left-choroid-plexus 47.6671 14.9540 1.0000 105.0000 104.0000
- 19 43 5019 5018.9 Right-Lateral-Ventricle 16.8475 12.8854 0.0000 90.0000 90.0000
- 20 44 419 418.5 Right-Inf-Lat-Vent 32.4701 14.7208 1.0000 77.0000 76.0000
- 21 46 13793 13792.8 Right-Cerebellum-White-Matter 88.9101 7.3755 7.0000 118.0000 111.0000
- 22 47 48644 48644.5 Right-Cerebellum-Cortex 59.4881 11.5923 0.0000 102.0000 102.0000
- 23 49 7926 7926.4 Right-Thalamus-Proper 79.4515 10.2296 28.0000 108.0000 80.0000
- 24 50 4009 4009.0 Right-Caudate 64.4524 9.2790 20.0000 96.0000 76.0000
- 25 51 5365 5365.1 Right-Putamen 73.4905 8.2743 36.0000 102.0000 66.0000
- 26 52 2056 2056.1 Right-Pallidum 86.5956 6.5549 54.0000 108.0000 54.0000
- 27 53 3725 3725.1 Right-Hippocampus 60.3413 9.7457 16.0000 106.0000 90.0000
- 28 54 1581 1580.6 Right-Amygdala 61.0694 8.4536 39.0000 91.0000 52.0000
- 29 58 735 735.4 Right-Accumbens-area 64.2864 7.7045 36.0000 90.0000 54.0000
- 30 60 3981 3980.5 Right-VentralDC 85.0800 11.7116 41.0000 120.0000 79.0000
- 31 62 90 89.7 Right-vessel 58.8557 13.1948 20.0000 87.0000 67.0000
- 32 63 1776 1775.5 Right-choroid-plexus 47.8300 14.9246 6.0000 105.0000 99.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1216 1215.9 WM-hypointensities 76.2415 14.1030 11.0000 120.0000 109.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 18 18.1 non-WM-hypointensities 69.1176 15.6799 44.0000 96.0000 52.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 269 269.3 Optic-Chiasm 69.1484 21.5125 11.0000 109.0000 98.0000
- 41 251 858 858.1 CC_Posterior 105.1093 7.6162 57.0000 123.0000 66.0000
- 42 252 351 351.1 CC_Mid_Posterior 101.4096 7.7299 66.0000 116.0000 50.0000
- 43 253 339 339.2 CC_Central 102.0760 7.2637 74.0000 117.0000 43.0000
- 44 254 378 378.0 CC_Mid_Anterior 102.6728 5.9289 80.0000 115.0000 35.0000
- 45 255 814 813.8 CC_Anterior 103.3381 8.7721 45.0000 120.0000 75.0000
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