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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub011 --surf-wm-vol --ctab /opt/freesurfer/5.3.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake6
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub011
    14. 

  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 269869.336529, mm^3
    15. 

  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 269533.409334, mm^3
    16. 

  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 539402.745863, mm^3
    17. 

  17. # Measure Mask, MaskVol, Mask Volume, 1907947.000000, mm^3
    18. 

  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1370643.403475, mm^3
    19. 

  19. # SegVolFile mri/wmparc.mgz 
    20. 

  20. # SegVolFileTimeStamp  2013/08/09 00:35:50 
    21. 

  21. # ColorTable /opt/freesurfer/5.3.0/WMParcStatsLUT.txt 
    22. 

  22. # ColorTableTimeStamp 2013/05/13 23:21:15 
    23. 

  23. # InVolFile  mri/norm.mgz 
    24. 

  24. # InVolFileTimeStamp  2013/08/08 12:07:15 
    25. 

  25. # InVolFrame 0 
    26. 

  26. # PVVolFile  mri/norm.mgz 
    27. 

  27. # PVVolFileTimeStamp  2013/08/08 12:07:15 
    28. 

  28. # ExcludeSegId 0 
    29. 

  29. # Only reporting non-empty segmentations
    30. 

  30. # VoxelVolume_mm3 1 
    31. 

  31. # TableCol  1 ColHeader Index 
    32. 

  32. # TableCol  1 FieldName Index 
    33. 

  33. # TableCol  1 Units     NA 
    34. 

  34. # TableCol  2 ColHeader SegId 
    35. 

  35. # TableCol  2 FieldName Segmentation Id
    36. 

  36. # TableCol  2 Units     NA
    37. 

  37. # TableCol  3 ColHeader NVoxels 
    38. 

  38. # TableCol  3 FieldName Number of Voxels
    39. 

  39. # TableCol  3 Units     unitless
    40. 

  40. # TableCol  4 ColHeader Volume_mm3
    41. 

  41. # TableCol  4 FieldName Volume
    42. 

  42. # TableCol  4 Units     mm^3
    43. 

  43. # TableCol  5 ColHeader StructName
    44. 

  44. # TableCol  5 FieldName Structure Name
    45. 

  45. # TableCol  5 Units     NA
    46. 

  46. # TableCol  6 ColHeader normMean 
    47. 

  47. # TableCol  6 FieldName Intensity normMean
    48. 

  48. # TableCol  6 Units     MR
    49. 

  49. # TableCol  7 ColHeader normStdDev
    50. 

  50. # TableCol  7 FieldName Itensity normStdDev
    51. 

  51. # TableCol  7 Units     MR
    52. 

  52. # TableCol  8 ColHeader normMin
    53. 

  53. # TableCol  8 FieldName Intensity normMin
    54. 

  54. # TableCol  8 Units     MR
    55. 

  55. # TableCol  9 ColHeader normMax
    56. 

  56. # TableCol  9 FieldName Intensity normMax
    57. 

  57. # TableCol  9 Units     MR
    58. 

  58. # TableCol 10 ColHeader normRange
    59. 

  59. # TableCol 10 FieldName Intensity normRange
    60. 

  60. # TableCol 10 Units     MR
    61. 

  61. # NRows 70 
    62. 

  62. # NTableCols 10 
    63. 

  63. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    64. 

  64.   1 3001      3645     3644.8  wm-lh-bankssts                   102.2767     9.7044    66.0000   121.0000    55.0000 
    65. 

  65.   2 3002      3672     3671.6  wm-lh-caudalanteriorcingulate    102.9303     7.7606    50.0000   119.0000    69.0000 
    66. 

  66.   3 3003      7879     7878.8  wm-lh-caudalmiddlefrontal         98.1239     9.7808    68.0000   118.0000    50.0000 
    67. 

  67.   4 3005      2393     2392.7  wm-lh-cuneus                      99.1345    10.9494    63.0000   121.0000    58.0000 
    68. 

  68.   5 3006       965      965.0  wm-lh-entorhinal                  86.9392     9.5469    58.0000   109.0000    51.0000 
    69. 

  69.   6 3007      8100     8100.3  wm-lh-fusiform                    95.9008    10.1716    58.0000   121.0000    63.0000 
    70. 

  70.   7 3008     12255    12254.6  wm-lh-inferiorparietal           104.7857    11.2475    61.0000   127.0000    66.0000 
    71. 

  71.   8 3009      7852     7852.2  wm-lh-inferiortemporal            93.3250    11.9240    57.0000   120.0000    63.0000 
    72. 

  72.   9 3010      4515     4515.1  wm-lh-isthmuscingulate           105.1372     8.3064    65.0000   126.0000    61.0000 
    73. 

  73.  10 3011     11248    11247.7  wm-lh-lateraloccipital           100.5724    10.7674    68.0000   127.0000    59.0000 
    74. 

  74.  11 3012      7404     7404.0  wm-lh-lateralorbitofrontal        97.8812    11.2047    54.0000   122.0000    68.0000 
    75. 

  75.  12 3013      5579     5579.3  wm-lh-lingual                     92.5557    10.0082    27.0000   119.0000    92.0000 
    76. 

  76.  13 3014      3285     3284.8  wm-lh-medialorbitofrontal         94.0929    11.7610    29.0000   119.0000    90.0000 
    77. 

  77.  14 3015      6625     6624.5  wm-lh-middletemporal              91.7891    11.8357    59.0000   122.0000    63.0000 
    78. 

  78.  15 3016      1634     1633.6  wm-lh-parahippocampal             93.1830     8.0606    61.0000   112.0000    51.0000 
    79. 

  79.  16 3017      3996     3996.3  wm-lh-paracentral                101.4706     8.8800    69.0000   122.0000    53.0000 
    80. 

  80.  17 3018      4093     4093.5  wm-lh-parsopercularis             98.1988     8.9909    69.0000   115.0000    46.0000 
    81. 

  81.  18 3019      1129     1128.7  wm-lh-parsorbitalis               97.6413    11.1976    66.0000   120.0000    54.0000 
    82. 

  82.  19 3020      3488     3488.1  wm-lh-parstriangularis           100.9584    10.4455    54.0000   121.0000    67.0000 
    83. 

  83.  20 3021      2795     2794.5  wm-lh-pericalcarine               92.5160    12.0644     6.0000   120.0000   114.0000 
    84. 

  84.  21 3022      9876     9875.7  wm-lh-postcentral                 96.5546    10.6331    64.0000   122.0000    58.0000 
    85. 

  85.  22 3023      5082     5081.7  wm-lh-posteriorcingulate         104.8605     8.3516    47.0000   124.0000    77.0000 
    86. 

  86.  23 3024     15693    15693.5  wm-lh-precentral                  98.7546     9.3426    64.0000   119.0000    55.0000 
    87. 

  87.  24 3025     11155    11155.1  wm-lh-precuneus                  105.1921     9.5049    56.0000   129.0000    73.0000 
    88. 

  88.  25 3026      2905     2905.3  wm-lh-rostralanteriorcingulate    99.5073    12.0094    33.0000   124.0000    91.0000 
    89. 

  89.  26 3027     15253    15252.6  wm-lh-rostralmiddlefrontal        98.4261    11.1561    54.0000   123.0000    69.0000 
    90. 

  90.  27 3028     21260    21260.1  wm-lh-superiorfrontal             95.7067    10.1371    61.0000   119.0000    58.0000 
    91. 

  91.  28 3029     15877    15876.9  wm-lh-superiorparietal           106.0668     9.8378    73.0000   132.0000    59.0000 
    92. 

  92.  29 3030      7807     7806.9  wm-lh-superiortemporal            94.6656    10.8831    59.0000   118.0000    59.0000 
    93. 

  93.  30 3031      9209     9209.4  wm-lh-supramarginal              102.6264    11.9626    67.0000   126.0000    59.0000 
    94. 

  94.  31 3032       267      267.4  wm-lh-frontalpole                 88.1193    11.1345    61.0000   108.0000    47.0000 
    95. 

  95.  32 3033       570      569.5  wm-lh-temporalpole                81.5474     9.5966    60.0000   103.0000    43.0000 
    96. 

  96.  33 3034       738      738.4  wm-lh-transversetemporal          96.1935     8.0624    73.0000   114.0000    41.0000 
    97. 

  97.  34 3035      9239     9238.7  wm-lh-insula                      95.7358    11.9783    51.0000   122.0000    71.0000 
    98. 

  98.  35 4001      3179     3179.0  wm-rh-bankssts                   104.6364     8.1375    72.0000   123.0000    51.0000 
    99. 

  99.  36 4002      4736     4735.5  wm-rh-caudalanteriorcingulate    102.1232     7.8918    71.0000   120.0000    49.0000 
    100. 

  100.  37 4003      6257     6257.3  wm-rh-caudalmiddlefrontal         95.2270     9.5239    61.0000   114.0000    53.0000 
    101. 

  101.  38 4005      2379     2378.6  wm-rh-cuneus                     101.3188    11.0336    67.0000   123.0000    56.0000 
    102. 

  102.  39 4006       943      943.5  wm-rh-entorhinal                  86.9943     9.8227    61.0000   111.0000    50.0000 
    103. 

  103.  40 4007      7227     7226.7  wm-rh-fusiform                    95.9050     9.6818    55.0000   121.0000    66.0000 
    104. 

  104.  41 4008     13632    13631.6  wm-rh-inferiorparietal           104.7777    10.2083    67.0000   128.0000    61.0000 
    105. 

  105.  42 4009      7156     7156.1  wm-rh-inferiortemporal            91.8499    10.3854    61.0000   117.0000    56.0000 
    106. 

  106.  43 4010      4491     4490.8  wm-rh-isthmuscingulate           104.1381     8.7030    48.0000   126.0000    78.0000 
    107. 

  107.  44 4011      9463     9462.9  wm-rh-lateraloccipital            98.2814    10.7517    65.0000   124.0000    59.0000 
    108. 

  108.  45 4012      6939     6939.2  wm-rh-lateralorbitofrontal        99.3409    11.0209    55.0000   123.0000    68.0000 
    109. 

  109.  46 4013      6059     6058.8  wm-rh-lingual                     93.6544    11.7543    11.0000   121.0000   110.0000 
    110. 

  110.  47 4014      4376     4375.8  wm-rh-medialorbitofrontal         95.9771    12.5852    34.0000   119.0000    85.0000 
    111. 

  111.  48 4015      7106     7106.4  wm-rh-middletemporal              94.4149    11.1258    50.0000   117.0000    67.0000 
    112. 

  112.  49 4016      1818     1817.8  wm-rh-parahippocampal             92.5794     8.8232    64.0000   115.0000    51.0000 
    113. 

  113.  50 4017      5608     5608.4  wm-rh-paracentral                100.6704     8.9876    68.0000   121.0000    53.0000 
    114. 

  114.  51 4018      5339     5338.9  wm-rh-parsopercularis             96.8505     8.6894    66.0000   116.0000    50.0000 
    115. 

  115.  52 4019      1471     1470.8  wm-rh-parsorbitalis              100.1408    11.1805    69.0000   121.0000    52.0000 
    116. 

  116.  53 4020      4540     4539.6  wm-rh-parstriangularis           100.0215    10.4690    63.0000   120.0000    57.0000 
    117. 

  117.  54 4021      3282     3282.0  wm-rh-pericalcarine               94.9613    10.8397    30.0000   121.0000    91.0000 
    118. 

  118.  55 4022      8250     8250.2  wm-rh-postcentral                 95.7792     9.4315    65.0000   118.0000    53.0000 
    119. 

  119.  56 4023      5564     5564.2  wm-rh-posteriorcingulate         103.4557     8.9248    40.0000   125.0000    85.0000 
    120. 

  120.  57 4024     15888    15888.4  wm-rh-precentral                  97.3469     8.1505    68.0000   114.0000    46.0000 
    121. 

  121.  58 4025     11886    11886.1  wm-rh-precuneus                  104.9693    10.3083    15.0000   126.0000   111.0000 
    122. 

  122.  59 4026      2360     2359.8  wm-rh-rostralanteriorcingulate    98.0732    13.8802    35.0000   122.0000    87.0000 
    123. 

  123.  60 4027     15533    15533.3  wm-rh-rostralmiddlefrontal        97.6801    10.8636    62.0000   120.0000    58.0000 
    124. 

  124.  61 4028     19765    19765.4  wm-rh-superiorfrontal             95.8233     9.7118    61.0000   119.0000    58.0000 
    125. 

  125.  62 4029     14394    14394.1  wm-rh-superiorparietal           104.7303    10.2239    70.0000   127.0000    57.0000 
    126. 

  126.  63 4030      8042     8042.2  wm-rh-superiortemporal            95.6778     9.3275    65.0000   117.0000    52.0000 
    127. 

  127.  64 4031     10316    10315.6  wm-rh-supramarginal              102.8873    10.4718    65.0000   127.0000    62.0000 
    128. 

  128.  65 4032       314      314.4  wm-rh-frontalpole                 86.2178     9.6035    64.0000   106.0000    42.0000 
    129. 

  129.  66 4033       654      654.0  wm-rh-temporalpole                84.0123     8.8710    59.0000   106.0000    47.0000 
    130. 

  130.  67 4034       707      707.2  wm-rh-transversetemporal          96.0873     8.7377    73.0000   114.0000    41.0000 
    131. 

  131.  68 4035      9834     9833.5  wm-rh-insula                      93.0619    11.3438    50.0000   122.0000    72.0000 
    132. 

  132.  69 5001     41087    41086.7  Left-UnsegmentedWhiteMatter      104.8683    10.7767     5.0000   127.0000   122.0000 
    133. 

  133.  70 5002     40709    40708.7  Right-UnsegmentedWhiteMatter     103.3262    10.4770     5.0000   131.0000   126.0000 
    134.