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cortical-surfaces-freesurfer
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recon-all.env

recon-all.env 3.5 KB
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  1. Thu Aug  8 10:54:16 CEST 2013
    2. 

  2. FREESURFER_HOME /opt/freesurfer/5.3.0
    3. 

  3. Actual FREESURFER_HOME /opt/freesurfer/5.3.0
    4. 

  4. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub011
    5. 

  5. setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    6. 

  6. -i /home/data/exppsy/forrest_gump/openfmri.org/sub011/anatomy/highres001.nii.gz -cw256 -all -T2 /home/data/exppsy/forrest_gump/openfmri.org/sub011/anatomy/other/t2w001.nii.gz -T2pial -subjid sub011 -sd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    7. 

  7. Linux snake6 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
    8. 

  8. 

  9. cputime      unlimited
    10. 

  10. filesize     unlimited
    11. 

  11. datasize     unlimited
    12. 

  12. stacksize    unlimited
    13. 

  13. coredumpsize 0 kbytes
    14. 

  14. memoryuse    unlimited
    15. 

  15. vmemoryuse   unlimited
    16. 

  16. descriptors  1024 
    17. 

  17. memorylocked 64 kbytes
    18. 

  18. maxproc      unlimited
    19. 

  19. maxlocks     unlimited
    20. 

  20. maxsignal    16382 
    21. 

  21. maxmessage   819200 
    22. 

  22. maxnice      0 
    23. 

  23. maxrtprio    0 
    24. 

  24. maxrttime    unlimited
    25. 

  25. 

  26. POSSUMDIR=/usr/share/fsl/5.0
    27. 

  27. LANGUAGE=en_US:en
    28. 

  28. USER=fkaule
    29. 

  29. SSH_CLIENT=141.44.98.28 55777 22
    30. 

  30. MAIL=/var/mail/fkaule
    31. 

  31. MSM_PRODUCT=MSM
    32. 

  32. LD_LIBRARY_PATH=/usr/lib/fsl/5.0
    33. 

  33. SHLVL=2
    34. 

  34. OLDPWD=/home
    35. 

  35. CONDOR_ID=40988.0
    36. 

  36. _CONDOR_MACHINE_AD=/var/lib/condor/execute/dir_18546/.machine.ad
    37. 

  37. HOME=/home/fkaule
    38. 

  38. SSH_TTY=/dev/pts/10
    39. 

  39. XDG_SESSION_COOKIE=fce1b605eb98d6b0f3e0b7ad000005bf-1375944552.163769-1862872819
    40. 

  40. _CONDOR_ANCESTOR_18546=18548:1375952055:1800793268
    41. 

  41. MINC_LIB_DIR=/opt/freesurfer/5.3.0/mni/lib
    42. 

  42. FREESURFER_HOME=/opt/freesurfer/5.3.0
    43. 

  43. MINC_BIN_DIR=/opt/freesurfer/5.3.0/mni/bin
    44. 

  44. _CONDOR_JOB_PIDS=
    45. 

  45. FSLDIR=/usr/share/fsl/5.0
    46. 

  46. CONDOR_PARENT_ID=medusa:19365:1375951932
    47. 

  47. FUNCTIONALS_DIR=/opt/freesurfer/5.3.0/sessions
    48. 

  48. TMPDIR=/var/lib/condor/execute/dir_18546
    49. 

  49. _CONDOR_JOB_IWD=/home/data/exppsy/forrest_gump
    50. 

  50. LOGNAME=fkaule
    51. 

  51. FSLMULTIFILEQUIT=TRUE
    52. 

  52. FSLTCLSH=/usr/bin/tclsh
    53. 

  53. TEMP=/var/lib/condor/execute/dir_18546
    54. 

  54. _=/usr/bin/ipython
    55. 

  55. FSFAST_HOME=/opt/freesurfer/5.3.0/fsfast
    56. 

  56. TERM=xterm
    57. 

  57. FSLMACHINELIST=
    58. 

  58. _JAVA_OPTIONS=-Xmx256m
    59. 

  59. PATH=/opt/freesurfer/5.3.0/bin:/opt/freesurfer/5.3.0/fsfast/bin:/opt/freesurfer/5.3.0/tktools:/opt/freesurfer/5.3.0/mni/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/usr/lib/fsl/5.0
    60. 

  60. OS=Linux
    61. 

  61. _CONDOR_DAGMAN_LOG=/home/data/exppsy/forrest_gump/pipe_tmp/metaflow_fs/batch/workflow-f6ef0e4c-d7a4-4a37-a0a9-c223ed5b1f93.dag.dagman.out
    62. 

  62. PERL5LIB=/opt/freesurfer/5.3.0/mni/lib/perl5/5.8.5
    63. 

  63. FSLOUTPUTTYPE=NIFTI_GZ
    64. 

  64. _CONDOR_ANCESTOR_2411=2412:1372249931:647671624
    65. 

  65. DISPLAY=:1
    66. 

  66. MNI_DIR=/opt/freesurfer/5.3.0/mni
    67. 

  67. _CONDOR_ANCESTOR_2412=18546:1375952055:2787408195
    68. 

  68. MNI_PERL5LIB=/opt/freesurfer/5.3.0/mni/lib/perl5/5.8.5
    69. 

  69. LANG=C
    70. 

  70. LOCAL_DIR=/opt/freesurfer/5.3.0/local
    71. 

  71. FSLBROWSER=/etc/alternatives/x-www-browser
    72. 

  72. TMP=/var/lib/condor/execute/dir_18546
    73. 

  73. FS_OVERRIDE=0
    74. 

  74. SSH_AUTH_SOCK=/tmp/ssh-YmVJB30651/agent.30651
    75. 

  75. FSLWISH=/usr/bin/wish
    76. 

  76. FSLREMOTECALL=
    77. 

  77. SHELL=/bin/bash
    78. 

  78. _CONDOR_ANCESTOR_7302=7421:1360325385:4217277112
    79. 

  79. _CONDOR_SLOT=slot1_10
    80. 

  80. MSM_HOME=/usr/local/MegaRAID Storage Manager
    81. 

  81. _CONDOR_ANCESTOR_7421=19365:1375951932:2149059971
    82. 

  82. FMRI_ANALYSIS_DIR=/opt/freesurfer/5.3.0/fsfast
    83. 

  83. FSF_OUTPUT_FORMAT=nii.gz
    84. 

  84. MNI_DATAPATH=/opt/freesurfer/5.3.0/mni/data
    85. 

  85. PWD=/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub011
    86. 

  86. SSH_CONNECTION=141.44.98.28 55777 141.44.17.54 22
    87. 

  87. SUBJECTS_DIR=/home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    88. 

  88. _CONDOR_MAX_DAGMAN_LOG=0
    89. 

  89. _CONDOR_JOB_AD=/var/lib/condor/execute/dir_18546/.job.ad
    90. 

  90. FSLLOCKDIR=
    91. 

  91. _CONDOR_SCRATCH_DIR=/var/lib/condor/execute/dir_18546
    92. 

  92. FIX_VERTEX_AREA=
    93. 

  93. NLSPATH=/usr/share/locale/%L/LC_MESSAGES/%N.cat
    94. 

  94. HOSTTYPE=x86_64-linux
    95. 

  95. VENDOR=unknown
    96. 

  96. OSTYPE=linux
    97. 

  97. MACHTYPE=x86_64
    98. 

  98. GROUP=fkaule
    99. 

  99. HOST=snake6
    100. 

  100. REMOTEHOST=
    101. 

  101. OMP_NUM_THREADS=1
    102. 

  102. REQUIRE_FS_MATCH=0
    103.