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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub007 --surf-wm-vol --ctab /opt/freesurfer/5.3.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake4
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub007
    14. 

  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 242615.979760, mm^3
    15. 

  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 245385.917032, mm^3
    16. 

  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 488001.896792, mm^3
    17. 

  17. # Measure Mask, MaskVol, Mask Volume, 1935152.000000, mm^3
    18. 

  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1479761.412688, mm^3
    19. 

  19. # SegVolFile mri/wmparc.mgz 
    20. 

  20. # SegVolFileTimeStamp  2013/08/09 01:07:35 
    21. 

  21. # ColorTable /opt/freesurfer/5.3.0/WMParcStatsLUT.txt 
    22. 

  22. # ColorTableTimeStamp 2013/05/13 23:21:15 
    23. 

  23. # InVolFile  mri/norm.mgz 
    24. 

  24. # InVolFileTimeStamp  2013/08/08 12:04:23 
    25. 

  25. # InVolFrame 0 
    26. 

  26. # PVVolFile  mri/norm.mgz 
    27. 

  27. # PVVolFileTimeStamp  2013/08/08 12:04:23 
    28. 

  28. # ExcludeSegId 0 
    29. 

  29. # Only reporting non-empty segmentations
    30. 

  30. # VoxelVolume_mm3 1 
    31. 

  31. # TableCol  1 ColHeader Index 
    32. 

  32. # TableCol  1 FieldName Index 
    33. 

  33. # TableCol  1 Units     NA 
    34. 

  34. # TableCol  2 ColHeader SegId 
    35. 

  35. # TableCol  2 FieldName Segmentation Id
    36. 

  36. # TableCol  2 Units     NA
    37. 

  37. # TableCol  3 ColHeader NVoxels 
    38. 

  38. # TableCol  3 FieldName Number of Voxels
    39. 

  39. # TableCol  3 Units     unitless
    40. 

  40. # TableCol  4 ColHeader Volume_mm3
    41. 

  41. # TableCol  4 FieldName Volume
    42. 

  42. # TableCol  4 Units     mm^3
    43. 

  43. # TableCol  5 ColHeader StructName
    44. 

  44. # TableCol  5 FieldName Structure Name
    45. 

  45. # TableCol  5 Units     NA
    46. 

  46. # TableCol  6 ColHeader normMean 
    47. 

  47. # TableCol  6 FieldName Intensity normMean
    48. 

  48. # TableCol  6 Units     MR
    49. 

  49. # TableCol  7 ColHeader normStdDev
    50. 

  50. # TableCol  7 FieldName Itensity normStdDev
    51. 

  51. # TableCol  7 Units     MR
    52. 

  52. # TableCol  8 ColHeader normMin
    53. 

  53. # TableCol  8 FieldName Intensity normMin
    54. 

  54. # TableCol  8 Units     MR
    55. 

  55. # TableCol  9 ColHeader normMax
    56. 

  56. # TableCol  9 FieldName Intensity normMax
    57. 

  57. # TableCol  9 Units     MR
    58. 

  58. # TableCol 10 ColHeader normRange
    59. 

  59. # TableCol 10 FieldName Intensity normRange
    60. 

  60. # TableCol 10 Units     MR
    61. 

  61. # NRows 70 
    62. 

  62. # NTableCols 10 
    63. 

  63. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    64. 

  64.   1 3001      3154     3153.9  wm-lh-bankssts                   106.5052     9.4541    64.0000   128.0000    64.0000 
    65. 

  65.   2 3002      2972     2972.1  wm-lh-caudalanteriorcingulate    100.4486    10.5174    40.0000   120.0000    80.0000 
    66. 

  66.   3 3003      8275     8275.3  wm-lh-caudalmiddlefrontal        100.3727     8.7979    64.0000   119.0000    55.0000 
    67. 

  67.   4 3005      2540     2539.7  wm-lh-cuneus                     100.1480    10.2138    66.0000   119.0000    53.0000 
    68. 

  68.   5 3006       772      772.5  wm-lh-entorhinal                  85.8721     8.3654    53.0000   112.0000    59.0000 
    69. 

  69.   6 3007      7401     7401.4  wm-lh-fusiform                    96.6636    10.2154    35.0000   123.0000    88.0000 
    70. 

  70.   7 3008     10740    10739.7  wm-lh-inferiorparietal           107.1023    10.3876    42.0000   129.0000    87.0000 
    71. 

  71.   8 3009      7216     7216.2  wm-lh-inferiortemporal            98.9314    11.6600    64.0000   124.0000    60.0000 
    72. 

  72.   9 3010      4430     4430.0  wm-lh-isthmuscingulate            99.8754    18.1896     5.0000   125.0000   120.0000 
    73. 

  73.  10 3011     10720    10719.8  wm-lh-lateraloccipital           103.2481    10.2237    69.0000   127.0000    58.0000 
    74. 

  74.  11 3012      7066     7066.0  wm-lh-lateralorbitofrontal       101.4493    11.2109    50.0000   125.0000    75.0000 
    75. 

  75.  12 3013      6645     6645.4  wm-lh-lingual                     94.7796    10.5072    35.0000   124.0000    89.0000 
    76. 

  76.  13 3014      3183     3183.1  wm-lh-medialorbitofrontal         91.8669    13.3245    27.0000   119.0000    92.0000 
    77. 

  77.  14 3015      5196     5195.7  wm-lh-middletemporal              96.2882    12.0334    62.0000   123.0000    61.0000 
    78. 

  78.  15 3016      1716     1716.4  wm-lh-parahippocampal             88.0927     9.0831    55.0000   111.0000    56.0000 
    79. 

  79.  16 3017      4864     4864.2  wm-lh-paracentral                101.2453     8.4298    64.0000   119.0000    55.0000 
    80. 

  80.  17 3018      4845     4845.1  wm-lh-parsopercularis            102.0503     9.4525    71.0000   121.0000    50.0000 
    81. 

  81.  18 3019      1038     1038.0  wm-lh-parsorbitalis              104.4277    11.5742    76.0000   126.0000    50.0000 
    82. 

  82.  19 3020      3039     3039.5  wm-lh-parstriangularis           105.2068    10.0911    74.0000   126.0000    52.0000 
    83. 

  83.  20 3021      2506     2506.0  wm-lh-pericalcarine               95.0235    10.4038    32.0000   116.0000    84.0000 
    84. 

  84.  21 3022      7691     7691.2  wm-lh-postcentral                 99.2204     9.4232    70.0000   123.0000    53.0000 
    85. 

  85.  22 3023      4440     4440.2  wm-lh-posteriorcingulate         102.2316    12.3406     8.0000   123.0000   115.0000 
    86. 

  86.  23 3024     13699    13698.8  wm-lh-precentral                 100.7357     8.5216    67.0000   124.0000    57.0000 
    87. 

  87.  24 3025     10766    10766.2  wm-lh-precuneus                  104.2629     9.5702    33.0000   125.0000    92.0000 
    88. 

  88.  25 3026      2922     2922.0  wm-lh-rostralanteriorcingulate    96.9082    13.1918    18.0000   119.0000   101.0000 
    89. 

  89.  26 3027     14665    14664.7  wm-lh-rostralmiddlefrontal       101.1971    10.9291    31.0000   129.0000    98.0000 
    90. 

  90.  27 3028     18741    18741.4  wm-lh-superiorfrontal             93.9124    10.7027    44.0000   116.0000    72.0000 
    91. 

  91.  28 3029     13243    13242.8  wm-lh-superiorparietal           105.3138     9.1413    68.0000   126.0000    58.0000 
    92. 

  92.  29 3030      9551     9550.7  wm-lh-superiortemporal           101.9011    10.4800    66.0000   129.0000    63.0000 
    93. 

  93.  30 3031     10107    10106.7  wm-lh-supramarginal              104.7697    11.2449    57.0000   130.0000    73.0000 
    94. 

  94.  31 3032       203      202.6  wm-lh-frontalpole                 85.3450    10.3015    62.0000   105.0000    43.0000 
    95. 

  95.  32 3033       701      701.4  wm-lh-temporalpole                94.4201    10.3665    70.0000   124.0000    54.0000 
    96. 

  96.  33 3034       866      865.7  wm-lh-transversetemporal         101.9776     7.5048    78.0000   120.0000    42.0000 
    97. 

  97.  34 3035      9780     9779.7  wm-lh-insula                      97.9738    11.0765    45.0000   125.0000    80.0000 
    98. 

  98.  35 4001      2321     2321.3  wm-rh-bankssts                   103.2581     9.5459    74.0000   126.0000    52.0000 
    99. 

  99.  36 4002      2566     2566.3  wm-rh-caudalanteriorcingulate     98.0651    11.0016    37.0000   122.0000    85.0000 
    100. 

  100.  37 4003      6507     6506.8  wm-rh-caudalmiddlefrontal         94.6293     9.6170    64.0000   116.0000    52.0000 
    101. 

  101.  38 4005      2609     2608.8  wm-rh-cuneus                     102.6635    10.2254    71.0000   122.0000    51.0000 
    102. 

  102.  39 4006       510      509.7  wm-rh-entorhinal                  80.5711     7.4994    61.0000   102.0000    41.0000 
    103. 

  103.  40 4007      8285     8285.4  wm-rh-fusiform                    93.4967    10.7379    55.0000   122.0000    67.0000 
    104. 

  104.  41 4008     14334    14333.7  wm-rh-inferiorparietal           105.6039    10.8146     7.0000   128.0000   121.0000 
    105. 

  105.  42 4009      6136     6135.7  wm-rh-inferiortemporal            93.4474    11.1792    59.0000   120.0000    61.0000 
    106. 

  106.  43 4010      4036     4035.6  wm-rh-isthmuscingulate            98.7586    17.5331     1.0000   126.0000   125.0000 
    107. 

  107.  44 4011      9858     9858.2  wm-rh-lateraloccipital           102.0871     9.8330    65.0000   126.0000    61.0000 
    108. 

  108.  45 4012      7746     7745.9  wm-rh-lateralorbitofrontal        99.5415    11.0399    35.0000   123.0000    88.0000 
    109. 

  109.  46 4013      6173     6173.4  wm-rh-lingual                     94.7452    10.0311     5.0000   119.0000   114.0000 
    110. 

  110.  47 4014      3592     3592.2  wm-rh-medialorbitofrontal         96.5476    11.0577    55.0000   120.0000    65.0000 
    111. 

  111.  48 4015      7303     7303.1  wm-rh-middletemporal              97.7263    10.5548    62.0000   122.0000    60.0000 
    112. 

  112.  49 4016      2158     2157.9  wm-rh-parahippocampal             88.2228    12.4148    16.0000   117.0000   101.0000 
    113. 

  113.  50 4017      5318     5317.8  wm-rh-paracentral                 99.1687     8.7821    64.0000   121.0000    57.0000 
    114. 

  114.  51 4018      4364     4363.9  wm-rh-parsopercularis             97.1936     9.2094    69.0000   116.0000    47.0000 
    115. 

  115.  52 4019      1293     1292.7  wm-rh-parsorbitalis               96.1682    10.6819    69.0000   119.0000    50.0000 
    116. 

  116.  53 4020      3372     3371.6  wm-rh-parstriangularis            98.3339    10.0760    67.0000   121.0000    54.0000 
    117. 

  117.  54 4021      2885     2885.3  wm-rh-pericalcarine               96.4380     9.3688    68.0000   117.0000    49.0000 
    118. 

  118.  55 4022      9349     9348.5  wm-rh-postcentral                 97.1741     8.8697    64.0000   120.0000    56.0000 
    119. 

  119.  56 4023      4022     4022.1  wm-rh-posteriorcingulate         101.2793    10.7658    10.0000   121.0000   111.0000 
    120. 

  120.  57 4024     14456    14456.0  wm-rh-precentral                  97.7226     8.4411    58.0000   117.0000    59.0000 
    121. 

  121.  58 4025     11736    11736.3  wm-rh-precuneus                  104.7214     9.0089    44.0000   125.0000    81.0000 
    122. 

  122.  59 4026      2451     2451.3  wm-rh-rostralanteriorcingulate    94.4808    15.9485    26.0000   121.0000    95.0000 
    123. 

  123.  60 4027     14509    14509.4  wm-rh-rostralmiddlefrontal        96.8851    10.5065    63.0000   119.0000    56.0000 
    124. 

  124.  61 4028     19270    19269.9  wm-rh-superiorfrontal             94.3566     9.9779    43.0000   118.0000    75.0000 
    125. 

  125.  62 4029     12693    12692.6  wm-rh-superiorparietal           106.0970     9.1691    67.0000   126.0000    59.0000 
    126. 

  126.  63 4030      8158     8157.7  wm-rh-superiortemporal            98.5045     9.7048    65.0000   130.0000    65.0000 
    127. 

  127.  64 4031      9084     9083.6  wm-rh-supramarginal              104.6527     9.9761    70.0000   127.0000    57.0000 
    128. 

  128.  65 4032       253      252.5  wm-rh-frontalpole                 84.9790     9.6202    63.0000   107.0000    44.0000 
    129. 

  129.  66 4033       852      852.3  wm-rh-temporalpole                86.8505    10.4466    54.0000   113.0000    59.0000 
    130. 

  130.  67 4034       524      523.6  wm-rh-transversetemporal          96.7514     8.1966    76.0000   118.0000    42.0000 
    131. 

  131.  68 4035      9220     9220.4  wm-rh-insula                      93.1204    11.0887    50.0000   121.0000    71.0000 
    132. 

  132.  69 5001     28070    28069.6  Left-UnsegmentedWhiteMatter      102.2518    13.7770     3.0000   134.0000   131.0000 
    133. 

  133.  70 5002     29842    29842.4  Right-UnsegmentedWhiteMatter      99.6893    15.1376     1.0000   133.0000   132.0000 
    134.