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aseg.stats

aseg.stats 9.4 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub007 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake4
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub007
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1330176.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1268535.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1271063.312881, mm^3
    17. 

  17. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 287624.203723, mm^3
    18. 

  18. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 289516.212366, mm^3
    19. 

  19. # Measure Cortex, CortexVol, Total cortical gray matter volume, 577140.416089, mm^3
    20. 

  20. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 242615.979760, mm^3
    21. 

  21. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 245385.917032, mm^3
    22. 

  22. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 488001.896792, mm^3
    23. 

  23. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 68475.000000, mm^3
    24. 

  24. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 753949.416089, mm^3
    25. 

  25. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1192288.312881, mm^3
    26. 

  26. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1135302.312881, mm^3
    27. 

  27. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1131196.000000, mm^3
    28. 

  28. # Measure Mask, MaskVol, Mask Volume, 1935152.000000, mm^3
    29. 

  29. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.898912, unitless
    30. 

  30. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.307746, unitless
    31. 

  31. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 15, unitless
    32. 

  32. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 16, unitless
    33. 

  33. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 31, unitless
    34. 

  34. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1479761.412688, mm^3
    35. 

  35. # SegVolFile mri/aseg.mgz 
    36. 

  36. # SegVolFileTimeStamp  2013/08/08 18:11:10 
    37. 

  37. # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt 
    38. 

  38. # ColorTableTimeStamp 2013/05/13 23:21:15 
    39. 

  39. # InVolFile  mri/norm.mgz 
    40. 

  40. # InVolFileTimeStamp  2013/08/08 12:04:23 
    41. 

  41. # InVolFrame 0 
    42. 

  42. # PVVolFile  mri/norm.mgz 
    43. 

  43. # PVVolFileTimeStamp  2013/08/08 12:04:23 
    44. 

  44. # Excluding Cortical Gray and White Matter
    45. 

  45. # ExcludeSegId 0 2 3 41 42 
    46. 

  46. # VoxelVolume_mm3 1 
    47. 

  47. # TableCol  1 ColHeader Index 
    48. 

  48. # TableCol  1 FieldName Index 
    49. 

  49. # TableCol  1 Units     NA 
    50. 

  50. # TableCol  2 ColHeader SegId 
    51. 

  51. # TableCol  2 FieldName Segmentation Id
    52. 

  52. # TableCol  2 Units     NA
    53. 

  53. # TableCol  3 ColHeader NVoxels 
    54. 

  54. # TableCol  3 FieldName Number of Voxels
    55. 

  55. # TableCol  3 Units     unitless
    56. 

  56. # TableCol  4 ColHeader Volume_mm3
    57. 

  57. # TableCol  4 FieldName Volume
    58. 

  58. # TableCol  4 Units     mm^3
    59. 

  59. # TableCol  5 ColHeader StructName
    60. 

  60. # TableCol  5 FieldName Structure Name
    61. 

  61. # TableCol  5 Units     NA
    62. 

  62. # TableCol  6 ColHeader normMean 
    63. 

  63. # TableCol  6 FieldName Intensity normMean
    64. 

  64. # TableCol  6 Units     MR
    65. 

  65. # TableCol  7 ColHeader normStdDev
    66. 

  66. # TableCol  7 FieldName Itensity normStdDev
    67. 

  67. # TableCol  7 Units     MR
    68. 

  68. # TableCol  8 ColHeader normMin
    69. 

  69. # TableCol  8 FieldName Intensity normMin
    70. 

  70. # TableCol  8 Units     MR
    71. 

  71. # TableCol  9 ColHeader normMax
    72. 

  72. # TableCol  9 FieldName Intensity normMax
    73. 

  73. # TableCol  9 Units     MR
    74. 

  74. # TableCol 10 ColHeader normRange
    75. 

  75. # TableCol 10 FieldName Intensity normRange
    76. 

  76. # TableCol 10 Units     MR
    77. 

  77. # NRows 45 
    78. 

  78. # NTableCols 10 
    79. 

  79. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    80. 

  80.   1   4     27099    27099.0  Left-Lateral-Ventricle            12.2478     9.9352     0.0000   100.0000   100.0000 
    81. 

  81.   2   5       746      746.2  Left-Inf-Lat-Vent                 32.9405    16.7598     2.0000    89.0000    87.0000 
    82. 

  82.   3   7     14869    14868.6  Left-Cerebellum-White-Matter      88.0736     8.5184     8.0000   136.0000   128.0000 
    83. 

  83.   4   8     53749    53748.8  Left-Cerebellum-Cortex            55.8771    10.8787     3.0000   109.0000   106.0000 
    84. 

  84.   5  10      9438     9437.7  Left-Thalamus-Proper              83.9679    10.5487    40.0000   109.0000    69.0000 
    85. 

  85.   6  11      4632     4632.1  Left-Caudate                      64.0193     9.5937    29.0000   106.0000    77.0000 
    86. 

  86.   7  12      7053     7053.5  Left-Putamen                      73.5407     9.2610    16.0000   108.0000    92.0000 
    87. 

  87.   8  13      2175     2175.1  Left-Pallidum                     89.6808     6.7836    60.0000   108.0000    48.0000 
    88. 

  88.   9  14      1331     1330.6  3rd-Ventricle                     22.0849    13.8578     0.0000    84.0000    84.0000 
    89. 

  89.  10  15      2027     2026.9  4th-Ventricle                     16.5627    10.4245     0.0000    69.0000    69.0000 
    90. 

  90.  11  16     24802    24801.6  Brain-Stem                        83.4377    10.6792     4.0000   131.0000   127.0000 
    91. 

  91.  12  17      3706     3706.2  Left-Hippocampus                  58.6997    11.2459     5.0000    99.0000    94.0000 
    92. 

  92.  13  18      1815     1814.6  Left-Amygdala                     61.0623     8.5786    17.0000    90.0000    73.0000 
    93. 

  93.  14  24      1445     1445.2  CSF                               31.7397    18.3188     1.0000   106.0000   105.0000 
    94. 

  94.  15  26       688      688.1  Left-Accumbens-area               56.9343     7.2289    38.0000    95.0000    57.0000 
    95. 

  95.  16  28      4129     4129.3  Left-VentralDC                    86.5588    12.8008    18.0000   121.0000   103.0000 
    96. 

  96.  17  30       160      160.4  Left-vessel                       58.0114    18.4895    12.0000    98.0000    86.0000 
    97. 

  97.  18  31      1418     1418.1  Left-choroid-plexus               50.3555    18.1101     3.0000   113.0000   110.0000 
    98. 

  98.  19  43     24942    24941.5  Right-Lateral-Ventricle           11.6276     9.9294     0.0000    81.0000    81.0000 
    99. 

  99.  20  44       859      859.4  Right-Inf-Lat-Vent                29.5030    15.3096     3.0000    74.0000    71.0000 
    100. 

  100.  21  46     15385    15384.8  Right-Cerebellum-White-Matter     86.9817     8.2987     8.0000   128.0000   120.0000 
    101. 

  101.  22  47     55350    55349.6  Right-Cerebellum-Cortex           54.1911    11.2072     2.0000   102.0000   100.0000 
    102. 

  102.  23  49      8230     8229.5  Right-Thalamus-Proper             79.9327    11.2809    20.0000   108.0000    88.0000 
    103. 

  103.  24  50      4882     4882.2  Right-Caudate                     63.2284     9.9296    14.0000   104.0000    90.0000 
    104. 

  104.  25  51      6576     6575.8  Right-Putamen                     72.4196     8.0983    32.0000   100.0000    68.0000 
    105. 

  105.  26  52      2431     2431.0  Right-Pallidum                    88.9332     6.0339    56.0000   111.0000    55.0000 
    106. 

  106.  27  53      3288     3288.5  Right-Hippocampus                 58.2929    11.5069     6.0000   103.0000    97.0000 
    107. 

  107.  28  54      2248     2248.2  Right-Amygdala                    60.9393     8.0945    27.0000    94.0000    67.0000 
    108. 

  108.  29  58       801      801.3  Right-Accumbens-area              64.0866     8.5688    40.0000    94.0000    54.0000 
    109. 

  109.  30  60      3958     3958.3  Right-VentralDC                   84.0269    13.4024    14.0000   114.0000   100.0000 
    110. 

  110.  31  62       209      208.8  Right-vessel                      52.8210    18.3264     8.0000    89.0000    81.0000 
    111. 

  111.  32  63      1740     1740.2  Right-choroid-plexus              50.3692    16.8455     3.0000   101.0000    98.0000 
    112. 

  112.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    113. 

  113.  34  77      2252     2252.1  WM-hypointensities                71.0897    23.3695     1.0000   112.0000   111.0000 
    114. 

  114.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    115. 

  115.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  37  80        11       10.5  non-WM-hypointensities            59.2727     8.8780    50.0000    83.0000    33.0000 
    117. 

  117.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  40  85       281      281.1  Optic-Chiasm                      76.4860    21.6261    13.0000   112.0000    99.0000 
    120. 

  120.  41 251       931      930.8  CC_Posterior                     103.3848     7.7424    49.0000   119.0000    70.0000 
    121. 

  121.  42 252       312      312.0  CC_Mid_Posterior                 103.4202     8.2465    80.0000   119.0000    39.0000 
    122. 

  122.  43 253       308      307.7  CC_Central                       100.3906     7.5122    70.0000   117.0000    47.0000 
    123. 

  123.  44 254       321      320.9  CC_Mid_Anterior                  101.7964     7.4685    76.0000   116.0000    40.0000 
    124. 

  124.  45 255       775      775.0  CC_Anterior                      103.0630     9.5234    46.0000   123.0000    77.0000 
    125.