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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub005
- # sysname Linux
- # hostname snake4
- # machine x86_64
- # user fkaule
- # anatomy_type volume
- #
- # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- # subjectname sub005
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1150498.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1139009.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1140759.860726, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 265530.342640, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 265717.541593, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 531247.884234, mm^3
- # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 210790.046283, mm^3
- # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 210686.930209, mm^3
- # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 421476.976492, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 62575.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 692823.884234, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1025743.860726, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1016210.860726, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1013555.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1526731.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 1.038245, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.377770, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 24, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 14, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 38, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1108117.508417, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2013/08/08 17:29:22
- # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2013/05/13 23:21:15
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2013/08/08 12:13:44
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2013/08/08 12:13:44
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 3278 3278.0 Left-Lateral-Ventricle 21.0364 18.4336 0.0000 111.0000 111.0000
- 2 5 580 579.9 Left-Inf-Lat-Vent 30.9059 15.0329 1.0000 76.0000 75.0000
- 3 7 12975 12975.4 Left-Cerebellum-White-Matter 85.8068 8.3684 11.0000 126.0000 115.0000
- 4 8 49757 49757.0 Left-Cerebellum-Cortex 58.6486 9.7780 5.0000 107.0000 102.0000
- 5 10 7832 7832.1 Left-Thalamus-Proper 78.2405 10.8703 28.0000 110.0000 82.0000
- 6 11 3508 3508.1 Left-Caudate 61.6213 8.3664 15.0000 105.0000 90.0000
- 7 12 6400 6400.0 Left-Putamen 69.0852 8.1395 34.0000 100.0000 66.0000
- 8 13 1978 1978.2 Left-Pallidum 78.6423 7.7701 48.0000 104.0000 56.0000
- 9 14 341 341.2 3rd-Ventricle 37.9339 13.5084 3.0000 77.0000 74.0000
- 10 15 1298 1297.9 4th-Ventricle 15.2103 12.1984 0.0000 79.0000 79.0000
- 11 16 20989 20988.9 Brain-Stem 78.4280 10.0700 0.0000 117.0000 117.0000
- 12 17 3854 3853.7 Left-Hippocampus 58.7239 9.3406 15.0000 105.0000 90.0000
- 13 18 1671 1671.0 Left-Amygdala 56.2891 8.3763 25.0000 86.0000 61.0000
- 14 24 491 491.3 CSF 38.7945 16.5204 0.0000 75.0000 75.0000
- 15 26 577 577.5 Left-Accumbens-area 57.4223 6.7508 43.0000 83.0000 40.0000
- 16 28 4012 4012.3 Left-VentralDC 80.7101 10.9782 32.0000 109.0000 77.0000
- 17 30 127 127.4 Left-vessel 59.9669 18.2353 9.0000 92.0000 83.0000
- 18 31 1356 1356.3 Left-choroid-plexus 48.9133 17.2563 10.0000 101.0000 91.0000
- 19 43 2569 2569.5 Right-Lateral-Ventricle 17.9769 14.3093 0.0000 85.0000 85.0000
- 20 44 409 409.4 Right-Inf-Lat-Vent 25.5660 15.0354 0.0000 67.0000 67.0000
- 21 46 14142 14142.2 Right-Cerebellum-White-Matter 85.2914 8.6356 32.0000 120.0000 88.0000
- 22 47 50562 50562.2 Right-Cerebellum-Cortex 58.2271 9.7822 0.0000 105.0000 105.0000
- 23 49 7753 7752.9 Right-Thalamus-Proper 74.7580 10.9490 31.0000 107.0000 76.0000
- 24 50 3833 3832.6 Right-Caudate 59.4809 9.4736 15.0000 102.0000 87.0000
- 25 51 6146 6145.6 Right-Putamen 67.7542 8.0211 32.0000 97.0000 65.0000
- 26 52 2178 2178.5 Right-Pallidum 81.4606 7.7160 53.0000 102.0000 49.0000
- 27 53 4059 4058.9 Right-Hippocampus 56.4790 9.4140 20.0000 97.0000 77.0000
- 28 54 1391 1391.4 Right-Amygdala 55.3621 8.2920 32.0000 87.0000 55.0000
- 29 58 632 632.0 Right-Accumbens-area 58.4758 8.6779 31.0000 93.0000 62.0000
- 30 60 4180 4180.1 Right-VentralDC 78.1054 11.7491 10.0000 109.0000 99.0000
- 31 62 65 65.0 Right-vessel 57.5507 14.2060 25.0000 88.0000 63.0000
- 32 63 1217 1216.6 Right-choroid-plexus 50.1312 16.3221 10.0000 100.0000 90.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1410 1410.1 WM-hypointensities 78.6446 14.3417 10.0000 113.0000 103.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 9 9.4 non-WM-hypointensities 77.8462 16.7424 32.0000 91.0000 59.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 220 220.1 Optic-Chiasm 73.8159 17.1462 26.0000 103.0000 77.0000
- 41 251 700 700.0 CC_Posterior 97.9672 7.0268 62.0000 119.0000 57.0000
- 42 252 332 332.2 CC_Mid_Posterior 94.7472 6.7601 48.0000 109.0000 61.0000
- 43 253 354 354.0 CC_Central 96.8543 6.6291 71.0000 110.0000 39.0000
- 44 254 393 392.7 CC_Mid_Anterior 97.9436 6.5019 45.0000 110.0000 65.0000
- 45 255 742 742.3 CC_Anterior 99.8786 8.9409 39.0000 121.0000 82.0000
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