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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub003 --surf-wm-vol --ctab /opt/freesurfer/5.3.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake5
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub003
    14. 

  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 188062.518030, mm^3
    15. 

  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 190680.654799, mm^3
    16. 

  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 378743.172829, mm^3
    17. 

  17. # Measure Mask, MaskVol, Mask Volume, 1465683.000000, mm^3
    18. 

  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1018934.427863, mm^3
    19. 

  19. # SegVolFile mri/wmparc.mgz 
    20. 

  20. # SegVolFileTimeStamp  2013/08/08 23:06:36 
    21. 

  21. # ColorTable /opt/freesurfer/5.3.0/WMParcStatsLUT.txt 
    22. 

  22. # ColorTableTimeStamp 2013/05/13 23:21:15 
    23. 

  23. # InVolFile  mri/norm.mgz 
    24. 

  24. # InVolFileTimeStamp  2013/08/08 12:16:59 
    25. 

  25. # InVolFrame 0 
    26. 

  26. # PVVolFile  mri/norm.mgz 
    27. 

  27. # PVVolFileTimeStamp  2013/08/08 12:16:59 
    28. 

  28. # ExcludeSegId 0 
    29. 

  29. # Only reporting non-empty segmentations
    30. 

  30. # VoxelVolume_mm3 1 
    31. 

  31. # TableCol  1 ColHeader Index 
    32. 

  32. # TableCol  1 FieldName Index 
    33. 

  33. # TableCol  1 Units     NA 
    34. 

  34. # TableCol  2 ColHeader SegId 
    35. 

  35. # TableCol  2 FieldName Segmentation Id
    36. 

  36. # TableCol  2 Units     NA
    37. 

  37. # TableCol  3 ColHeader NVoxels 
    38. 

  38. # TableCol  3 FieldName Number of Voxels
    39. 

  39. # TableCol  3 Units     unitless
    40. 

  40. # TableCol  4 ColHeader Volume_mm3
    41. 

  41. # TableCol  4 FieldName Volume
    42. 

  42. # TableCol  4 Units     mm^3
    43. 

  43. # TableCol  5 ColHeader StructName
    44. 

  44. # TableCol  5 FieldName Structure Name
    45. 

  45. # TableCol  5 Units     NA
    46. 

  46. # TableCol  6 ColHeader normMean 
    47. 

  47. # TableCol  6 FieldName Intensity normMean
    48. 

  48. # TableCol  6 Units     MR
    49. 

  49. # TableCol  7 ColHeader normStdDev
    50. 

  50. # TableCol  7 FieldName Itensity normStdDev
    51. 

  51. # TableCol  7 Units     MR
    52. 

  52. # TableCol  8 ColHeader normMin
    53. 

  53. # TableCol  8 FieldName Intensity normMin
    54. 

  54. # TableCol  8 Units     MR
    55. 

  55. # TableCol  9 ColHeader normMax
    56. 

  56. # TableCol  9 FieldName Intensity normMax
    57. 

  57. # TableCol  9 Units     MR
    58. 

  58. # TableCol 10 ColHeader normRange
    59. 

  59. # TableCol 10 FieldName Intensity normRange
    60. 

  60. # TableCol 10 Units     MR
    61. 

  61. # NRows 70 
    62. 

  62. # NTableCols 10 
    63. 

  63. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    64. 

  64.   1 3001      2144     2143.7  wm-lh-bankssts                   102.6523     9.7815    70.0000   125.0000    55.0000 
    65. 

  65.   2 3002      2810     2809.8  wm-lh-caudalanteriorcingulate    100.2631     9.5949    53.0000   118.0000    65.0000 
    66. 

  66.   3 3003      5684     5684.4  wm-lh-caudalmiddlefrontal         97.8236    11.0941    59.0000   119.0000    60.0000 
    67. 

  67.   4 3005      2013     2013.3  wm-lh-cuneus                      98.5047    11.0779    64.0000   119.0000    55.0000 
    68. 

  68.   5 3006       916      916.3  wm-lh-entorhinal                  87.7336    10.1130    63.0000   110.0000    47.0000 
    69. 

  69.   6 3007      5595     5594.7  wm-lh-fusiform                    98.6320    11.6180    52.0000   127.0000    75.0000 
    70. 

  70.   7 3008     10709    10708.8  wm-lh-inferiorparietal           104.1996    11.3517    61.0000   128.0000    67.0000 
    71. 

  71.   8 3009      5080     5079.7  wm-lh-inferiortemporal            94.9896    12.2443    61.0000   123.0000    62.0000 
    72. 

  72.   9 3010      3211     3211.0  wm-lh-isthmuscingulate           103.4019     9.2822    29.0000   120.0000    91.0000 
    73. 

  73.  10 3011      8140     8140.2  wm-lh-lateraloccipital           100.5922    10.8463    65.0000   124.0000    59.0000 
    74. 

  74.  11 3012      5232     5232.0  wm-lh-lateralorbitofrontal        99.0436    11.9121    49.0000   122.0000    73.0000 
    75. 

  75.  12 3013      5275     5275.3  wm-lh-lingual                     95.7468    11.3618    49.0000   126.0000    77.0000 
    76. 

  76.  13 3014      3112     3112.3  wm-lh-medialorbitofrontal         93.2881    12.3823    34.0000   117.0000    83.0000 
    77. 

  77.  14 3015      4170     4169.8  wm-lh-middletemporal              93.4100    12.5272    58.0000   125.0000    67.0000 
    78. 

  78.  15 3016      1356     1355.8  wm-lh-parahippocampal             94.3011     8.7594    68.0000   117.0000    49.0000 
    79. 

  79.  16 3017      2891     2890.7  wm-lh-paracentral                 99.2928    10.9833    66.0000   122.0000    56.0000 
    80. 

  80.  17 3018      3151     3150.8  wm-lh-parsopercularis             97.7474    10.3696    66.0000   116.0000    50.0000 
    81. 

  81.  18 3019       755      755.0  wm-lh-parsorbitalis               98.1467    11.2841    72.0000   121.0000    49.0000 
    82. 

  82.  19 3020      2848     2848.3  wm-lh-parstriangularis           100.6239    10.3018    66.0000   119.0000    53.0000 
    83. 

  83.  20 3021      3337     3336.8  wm-lh-pericalcarine               99.1285    10.7024    40.0000   126.0000    86.0000 
    84. 

  84.  21 3022      6306     6305.8  wm-lh-postcentral                 96.6542    11.2948    62.0000   123.0000    61.0000 
    85. 

  85.  22 3023      4348     4348.2  wm-lh-posteriorcingulate         102.8466    10.6052    34.0000   123.0000    89.0000 
    86. 

  86.  23 3024      9854     9854.0  wm-lh-precentral                  97.4071    10.2007    64.0000   120.0000    56.0000 
    87. 

  87.  24 3025      8168     8168.4  wm-lh-precuneus                  102.8259    11.0073    16.0000   128.0000   112.0000 
    88. 

  88.  25 3026      2574     2573.5  wm-lh-rostralanteriorcingulate   101.7663    10.8114    64.0000   118.0000    54.0000 
    89. 

  89.  26 3027     10352    10351.6  wm-lh-rostralmiddlefrontal        97.6158    11.6049    58.0000   121.0000    63.0000 
    90. 

  90.  27 3028     14322    14321.7  wm-lh-superiorfrontal             94.0301    11.1815    55.0000   115.0000    60.0000 
    91. 

  91.  28 3029     11486    11485.7  wm-lh-superiorparietal           104.0224    10.8504    62.0000   126.0000    64.0000 
    92. 

  92.  29 3030      6842     6842.4  wm-lh-superiortemporal            99.6348    12.3060    57.0000   127.0000    70.0000 
    93. 

  93.  30 3031      6737     6737.0  wm-lh-supramarginal              102.6199    12.7142    63.0000   127.0000    64.0000 
    94. 

  94.  31 3032       185      185.2  wm-lh-frontalpole                 83.8109    10.0052    62.0000   102.0000    40.0000 
    95. 

  95.  32 3033       533      532.9  wm-lh-temporalpole                85.3320     9.4262    60.0000   108.0000    48.0000 
    96. 

  96.  33 3034       564      563.6  wm-lh-transversetemporal          99.2423     7.9541    76.0000   119.0000    43.0000 
    97. 

  97.  34 3035      6653     6652.8  wm-lh-insula                      98.1088    13.1772    24.0000   124.0000   100.0000 
    98. 

  98.  35 4001      2840     2840.4  wm-rh-bankssts                   105.4469     8.8875    69.0000   126.0000    57.0000 
    99. 

  99.  36 4002      2610     2609.6  wm-rh-caudalanteriorcingulate    100.7652     9.0360    60.0000   118.0000    58.0000 
    100. 

  100.  37 4003      4047     4046.6  wm-rh-caudalmiddlefrontal         96.5950    10.5181    62.0000   114.0000    52.0000 
    101. 

  101.  38 4005      2033     2033.1  wm-rh-cuneus                      98.2817    11.2427    64.0000   120.0000    56.0000 
    102. 

  102.  39 4006       551      551.0  wm-rh-entorhinal                  83.4481    10.2923    54.0000   116.0000    62.0000 
    103. 

  103.  40 4007      5449     5448.6  wm-rh-fusiform                    96.2141    11.8002    40.0000   124.0000    84.0000 
    104. 

  104.  41 4008     12357    12357.5  wm-rh-inferiorparietal           102.6515    11.4938    57.0000   125.0000    68.0000 
    105. 

  105.  42 4009      4950     4949.8  wm-rh-inferiortemporal            93.5858    12.2608    53.0000   118.0000    65.0000 
    106. 

  106.  43 4010      2789     2788.7  wm-rh-isthmuscingulate           102.4727     9.6497    40.0000   121.0000    81.0000 
    107. 

  107.  44 4011      7763     7762.6  wm-rh-lateraloccipital            98.4683    10.6787    65.0000   120.0000    55.0000 
    108. 

  108.  45 4012      6147     6146.6  wm-rh-lateralorbitofrontal       101.9898    11.2256    56.0000   120.0000    64.0000 
    109. 

  109.  46 4013      5198     5197.8  wm-rh-lingual                     93.6804    13.1005     4.0000   126.0000   122.0000 
    110. 

  110.  47 4014      3322     3321.6  wm-rh-medialorbitofrontal         98.6007    12.1410    58.0000   117.0000    59.0000 
    111. 

  111.  48 4015      4994     4993.9  wm-rh-middletemporal              95.4295    12.3480    58.0000   119.0000    61.0000 
    112. 

  112.  49 4016      1632     1632.1  wm-rh-parahippocampal             94.0812    10.0659    53.0000   121.0000    68.0000 
    113. 

  113.  50 4017      4249     4248.8  wm-rh-paracentral                100.2668    10.3790    68.0000   120.0000    52.0000 
    114. 

  114.  51 4018      2588     2588.2  wm-rh-parsopercularis             97.8410    10.0430    61.0000   115.0000    54.0000 
    115. 

  115.  52 4019      1054     1053.7  wm-rh-parsorbitalis               97.5024    10.7267    68.0000   117.0000    49.0000 
    116. 

  116.  53 4020      3209     3209.2  wm-rh-parstriangularis            98.7343    10.0024    66.0000   120.0000    54.0000 
    117. 

  117.  54 4021      3090     3090.2  wm-rh-pericalcarine               96.6087    12.1680    22.0000   121.0000    99.0000 
    118. 

  118.  55 4022      5844     5843.8  wm-rh-postcentral                 94.3693    11.0580    63.0000   117.0000    54.0000 
    119. 

  119.  56 4023      3819     3819.0  wm-rh-posteriorcingulate         100.5642    11.2023    29.0000   121.0000    92.0000 
    120. 

  120.  57 4024     10313    10313.1  wm-rh-precentral                  95.5592     9.9835    65.0000   117.0000    52.0000 
    121. 

  121.  58 4025      9477     9477.0  wm-rh-precuneus                  102.9443    10.5204    23.0000   126.0000   103.0000 
    122. 

  122.  59 4026      1585     1585.1  wm-rh-rostralanteriorcingulate   100.0899    11.9433    51.0000   118.0000    67.0000 
    123. 

  123.  60 4027     10613    10613.0  wm-rh-rostralmiddlefrontal        96.2317    11.7899    57.0000   120.0000    63.0000 
    124. 

  124.  61 4028     14713    14712.8  wm-rh-superiorfrontal             94.0078    11.0751    60.0000   116.0000    56.0000 
    125. 

  125.  62 4029     10255    10255.2  wm-rh-superiorparietal           101.2935    11.2464    64.0000   123.0000    59.0000 
    126. 

  126.  63 4030      5277     5277.4  wm-rh-superiortemporal            96.4215    10.9538    62.0000   124.0000    62.0000 
    127. 

  127.  64 4031      7641     7640.9  wm-rh-supramarginal              102.5572    11.9389    61.0000   124.0000    63.0000 
    128. 

  128.  65 4032       295      294.8  wm-rh-frontalpole                 85.3930    10.5211    59.0000   108.0000    49.0000 
    129. 

  129.  66 4033       524      523.6  wm-rh-temporalpole                83.6194     9.8377    60.0000   103.0000    43.0000 
    130. 

  130.  67 4034       399      399.4  wm-rh-transversetemporal          98.3544     9.2748    76.0000   120.0000    44.0000 
    131. 

  131.  68 4035      6709     6709.4  wm-rh-insula                      94.9661    13.5322    30.0000   125.0000    95.0000 
    132. 

  132.  69 5001     21614    21613.9  Left-UnsegmentedWhiteMatter      103.4355    11.9772    14.0000   128.0000   114.0000 
    133. 

  133.  70 5002     21556    21556.0  Right-UnsegmentedWhiteMatter     102.5600    11.9574     6.0000   127.0000   121.0000 
    134.