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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub003
- # sysname Linux
- # hostname snake5
- # machine x86_64
- # user fkaule
- # anatomy_type volume
- #
- # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- # subjectname sub003
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1042313.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1031549.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1034086.838159, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 236673.499849, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 236677.165480, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 473350.665329, mm^3
- # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 188062.518030, mm^3
- # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 190680.654799, mm^3
- # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 378743.172829, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 59365.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 629997.665329, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 920678.838159, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 912477.838159, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 909021.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1465683.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 1.022944, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.438447, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 9, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 13, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 22, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1018934.427863, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2013/08/08 17:09:40
- # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2013/05/13 23:21:15
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2013/08/08 12:16:59
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2013/08/08 12:16:59
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 3174 3174.3 Left-Lateral-Ventricle 21.2305 15.3808 0.0000 104.0000 104.0000
- 2 5 341 340.8 Left-Inf-Lat-Vent 29.4807 15.1125 2.0000 89.0000 87.0000
- 3 7 12687 12687.2 Left-Cerebellum-White-Matter 86.2224 7.2354 35.0000 115.0000 80.0000
- 4 8 48130 48129.7 Left-Cerebellum-Cortex 58.3578 10.0651 6.0000 109.0000 103.0000
- 5 10 7080 7079.9 Left-Thalamus-Proper 83.2573 10.8962 47.0000 112.0000 65.0000
- 6 11 3482 3482.1 Left-Caudate 66.9096 9.0661 26.0000 112.0000 86.0000
- 7 12 6615 6615.4 Left-Putamen 74.7260 8.8382 21.0000 107.0000 86.0000
- 8 13 1985 1984.9 Left-Pallidum 88.2226 6.7586 40.0000 108.0000 68.0000
- 9 14 858 858.2 3rd-Ventricle 22.8597 16.2584 0.0000 64.0000 64.0000
- 10 15 1310 1309.6 4th-Ventricle 16.0383 11.8436 0.0000 80.0000 80.0000
- 11 16 18583 18583.4 Brain-Stem 82.8475 10.5070 0.0000 118.0000 118.0000
- 12 17 3974 3974.1 Left-Hippocampus 59.3587 9.2366 16.0000 100.0000 84.0000
- 13 18 1426 1426.3 Left-Amygdala 57.6771 8.3111 12.0000 82.0000 70.0000
- 14 24 600 600.1 CSF 32.1256 16.1478 0.0000 77.0000 77.0000
- 15 26 727 727.0 Left-Accumbens-area 61.3471 6.6428 36.0000 89.0000 53.0000
- 16 28 3496 3495.8 Left-VentralDC 86.8485 12.6200 20.0000 115.0000 95.0000
- 17 30 198 198.0 Left-vessel 57.2535 15.7208 17.0000 90.0000 73.0000
- 18 31 964 964.1 Left-choroid-plexus 51.5581 17.8255 12.0000 98.0000 86.0000
- 19 43 2276 2276.5 Right-Lateral-Ventricle 21.4257 14.6637 0.0000 97.0000 97.0000
- 20 44 215 214.5 Right-Inf-Lat-Vent 31.5939 12.9283 3.0000 68.0000 65.0000
- 21 46 13616 13616.0 Right-Cerebellum-White-Matter 85.1354 7.6634 24.0000 116.0000 92.0000
- 22 47 50097 50096.9 Right-Cerebellum-Cortex 55.8591 10.1953 2.0000 94.0000 92.0000
- 23 49 7254 7254.0 Right-Thalamus-Proper 77.9326 11.1098 19.0000 112.0000 93.0000
- 24 50 3359 3359.2 Right-Caudate 67.3685 9.7129 27.0000 107.0000 80.0000
- 25 51 6317 6317.2 Right-Putamen 75.9959 8.2264 20.0000 106.0000 86.0000
- 26 52 1790 1790.4 Right-Pallidum 89.3379 6.3517 55.0000 107.0000 52.0000
- 27 53 3896 3895.7 Right-Hippocampus 58.4969 9.6152 20.0000 103.0000 83.0000
- 28 54 1726 1726.5 Right-Amygdala 59.1420 7.9957 26.0000 89.0000 63.0000
- 29 58 761 760.8 Right-Accumbens-area 66.4876 7.8368 41.0000 97.0000 56.0000
- 30 60 3476 3476.1 Right-VentralDC 86.9940 12.6651 17.0000 116.0000 99.0000
- 31 62 111 110.9 Right-vessel 55.1393 15.7303 8.0000 97.0000 89.0000
- 32 63 1384 1384.2 Right-choroid-plexus 51.9573 16.5131 6.0000 105.0000 99.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1460 1460.3 WM-hypointensities 76.4461 14.0695 17.0000 115.0000 98.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 13 12.6 non-WM-hypointensities 72.9474 14.4125 30.0000 96.0000 66.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 227 226.9 Optic-Chiasm 72.4722 20.6641 21.0000 112.0000 91.0000
- 41 251 717 717.4 CC_Posterior 105.7881 7.5124 61.0000 120.0000 59.0000
- 42 252 331 331.4 CC_Mid_Posterior 100.9716 11.6863 32.0000 116.0000 84.0000
- 43 253 360 359.8 CC_Central 99.6843 8.5346 65.0000 120.0000 55.0000
- 44 254 392 392.5 CC_Mid_Anterior 101.8128 6.8048 72.0000 116.0000 44.0000
- 45 255 752 752.4 CC_Anterior 102.9150 9.2659 34.0000 119.0000 85.0000
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