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aseg.stats

aseg.stats 9.4 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub002 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake5
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub002
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1384774.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1351349.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1353893.663285, mm^3
    17. 

  17. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 301051.478334, mm^3
    18. 

  18. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 289136.374059, mm^3
    19. 

  19. # Measure Cortex, CortexVol, Total cortical gray matter volume, 590187.852393, mm^3
    20. 

  20. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 272836.406457, mm^3
    21. 

  21. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 274536.404436, mm^3
    22. 

  22. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 547372.810893, mm^3
    23. 

  23. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 68034.000000, mm^3
    24. 

  24. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 773698.852393, mm^3
    25. 

  25. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1234748.663285, mm^3
    26. 

  26. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1206836.663285, mm^3
    27. 

  27. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1203054.000000, mm^3
    28. 

  28. # Measure Mask, MaskVol, Mask Volume, 1983181.000000, mm^3
    29. 

  29. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.930755, unitless
    30. 

  30. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.332966, unitless
    31. 

  31. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 13, unitless
    32. 

  32. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 11, unitless
    33. 

  33. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 24, unitless
    34. 

  34. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1487795.717544, mm^3
    35. 

  35. # SegVolFile mri/aseg.mgz 
    36. 

  36. # SegVolFileTimeStamp  2013/08/08 17:38:36 
    37. 

  37. # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt 
    38. 

  38. # ColorTableTimeStamp 2013/05/13 23:21:15 
    39. 

  39. # InVolFile  mri/norm.mgz 
    40. 

  40. # InVolFileTimeStamp  2013/08/08 12:05:04 
    41. 

  41. # InVolFrame 0 
    42. 

  42. # PVVolFile  mri/norm.mgz 
    43. 

  43. # PVVolFileTimeStamp  2013/08/08 12:05:04 
    44. 

  44. # Excluding Cortical Gray and White Matter
    45. 

  45. # ExcludeSegId 0 2 3 41 42 
    46. 

  46. # VoxelVolume_mm3 1 
    47. 

  47. # TableCol  1 ColHeader Index 
    48. 

  48. # TableCol  1 FieldName Index 
    49. 

  49. # TableCol  1 Units     NA 
    50. 

  50. # TableCol  2 ColHeader SegId 
    51. 

  51. # TableCol  2 FieldName Segmentation Id
    52. 

  52. # TableCol  2 Units     NA
    53. 

  53. # TableCol  3 ColHeader NVoxels 
    54. 

  54. # TableCol  3 FieldName Number of Voxels
    55. 

  55. # TableCol  3 Units     unitless
    56. 

  56. # TableCol  4 ColHeader Volume_mm3
    57. 

  57. # TableCol  4 FieldName Volume
    58. 

  58. # TableCol  4 Units     mm^3
    59. 

  59. # TableCol  5 ColHeader StructName
    60. 

  60. # TableCol  5 FieldName Structure Name
    61. 

  61. # TableCol  5 Units     NA
    62. 

  62. # TableCol  6 ColHeader normMean 
    63. 

  63. # TableCol  6 FieldName Intensity normMean
    64. 

  64. # TableCol  6 Units     MR
    65. 

  65. # TableCol  7 ColHeader normStdDev
    66. 

  66. # TableCol  7 FieldName Itensity normStdDev
    67. 

  67. # TableCol  7 Units     MR
    68. 

  68. # TableCol  8 ColHeader normMin
    69. 

  69. # TableCol  8 FieldName Intensity normMin
    70. 

  70. # TableCol  8 Units     MR
    71. 

  71. # TableCol  9 ColHeader normMax
    72. 

  72. # TableCol  9 FieldName Intensity normMax
    73. 

  73. # TableCol  9 Units     MR
    74. 

  74. # TableCol 10 ColHeader normRange
    75. 

  75. # TableCol 10 FieldName Intensity normRange
    76. 

  76. # TableCol 10 Units     MR
    77. 

  77. # NRows 45 
    78. 

  78. # NTableCols 10 
    79. 

  79. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    80. 

  80.   1   4     15712    15712.2  Left-Lateral-Ventricle            13.7050    12.1896     0.0000    84.0000    84.0000 
    81. 

  81.   2   5       586      585.7  Left-Inf-Lat-Vent                 33.7741    15.7252     5.0000    80.0000    75.0000 
    82. 

  82.   3   7     17221    17221.1  Left-Cerebellum-White-Matter      85.1117     7.8009    12.0000   110.0000    98.0000 
    83. 

  83.   4   8     58054    58054.2  Left-Cerebellum-Cortex            53.5509    11.2598     0.0000    95.0000    95.0000 
    84. 

  84.   5  10      8295     8294.8  Left-Thalamus-Proper              87.0411    10.3772    44.0000   115.0000    71.0000 
    85. 

  85.   6  11      4520     4520.0  Left-Caudate                      70.0460     9.5331    34.0000   106.0000    72.0000 
    86. 

  86.   7  12      7471     7470.7  Left-Putamen                      76.8807     8.8960     4.0000   107.0000   103.0000 
    87. 

  87.   8  13      2046     2046.1  Left-Pallidum                     90.3532     6.7833    44.0000   117.0000    73.0000 
    88. 

  88.   9  14      1870     1870.4  3rd-Ventricle                     20.7024    14.2903     0.0000    89.0000    89.0000 
    89. 

  89.  10  15      2631     2630.7  4th-Ventricle                     17.2895    11.1389     0.0000    71.0000    71.0000 
    90. 

  90.  11  16     23971    23970.8  Brain-Stem                        84.3985    10.0880    14.0000   114.0000   100.0000 
    91. 

  91.  12  17      3975     3975.4  Left-Hippocampus                  62.2272     9.1597    18.0000   110.0000    92.0000 
    92. 

  92.  13  18      1693     1692.7  Left-Amygdala                     65.0293     7.7407    45.0000    91.0000    46.0000 
    93. 

  93.  14  24      1208     1207.9  CSF                               32.2122    15.5500     1.0000    84.0000    83.0000 
    94. 

  94.  15  26       935      935.0  Left-Accumbens-area               63.8970     7.4818    41.0000    93.0000    52.0000 
    95. 

  95.  16  28      4588     4588.1  Left-VentralDC                    90.6797    11.7927    24.0000   128.0000   104.0000 
    96. 

  96.  17  30       116      116.2  Left-vessel                       56.8880    17.0513     8.0000    84.0000    76.0000 
    97. 

  97.  18  31      1535     1535.0  Left-choroid-plexus               48.1167    16.7658     2.0000   110.0000   108.0000 
    98. 

  98.  19  43      7505     7504.9  Right-Lateral-Ventricle           17.4018    13.2278     0.0000    81.0000    81.0000 
    99. 

  99.  20  44       330      330.0  Right-Inf-Lat-Vent                30.0752    14.6490     0.0000    74.0000    74.0000 
    100. 

  100.  21  46     16869    16869.3  Right-Cerebellum-White-Matter     85.2918     7.2679    40.0000   110.0000    70.0000 
    101. 

  101.  22  47     59084    59084.4  Right-Cerebellum-Cortex           54.3723    10.7841     0.0000    92.0000    92.0000 
    102. 

  102.  23  49      7459     7458.8  Right-Thalamus-Proper             83.5661    10.6529    19.0000   115.0000    96.0000 
    103. 

  103.  24  50      4785     4784.8  Right-Caudate                     68.6247     9.8990    14.0000   114.0000   100.0000 
    104. 

  104.  25  51      6567     6567.1  Right-Putamen                     75.9976     8.0606    20.0000   103.0000    83.0000 
    105. 

  105.  26  52      1992     1992.3  Right-Pallidum                    90.6654     6.7302    28.0000   109.0000    81.0000 
    106. 

  106.  27  53      4565     4564.8  Right-Hippocampus                 60.4713    10.4706     7.0000   106.0000    99.0000 
    107. 

  107.  28  54      2235     2234.9  Right-Amygdala                    60.5919     7.7259    35.0000    89.0000    54.0000 
    108. 

  108.  29  58       818      818.0  Right-Accumbens-area              67.7750     8.1039    41.0000    98.0000    57.0000 
    109. 

  109.  30  60      4389     4389.2  Right-VentralDC                   89.2832    12.5934    10.0000   122.0000   112.0000 
    110. 

  110.  31  62       136      136.5  Right-vessel                      55.9379    14.5837    20.0000    87.0000    67.0000 
    111. 

  111.  32  63      2202     2201.8  Right-choroid-plexus              47.9276    15.7793     3.0000   100.0000    97.0000 
    112. 

  112.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    113. 

  113.  34  77      1484     1484.4  WM-hypointensities                75.7681    14.0706    10.0000   107.0000    97.0000 
    114. 

  114.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    115. 

  115.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  37  80        11       10.8  non-WM-hypointensities            65.9231    23.7994     7.0000    90.0000    83.0000 
    117. 

  117.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  40  85       263      262.7  Optic-Chiasm                      74.8775    23.4217     7.0000   115.0000   108.0000 
    120. 

  120.  41 251       816      816.2  CC_Posterior                     107.2210     7.1311    75.0000   124.0000    49.0000 
    121. 

  121.  42 252       395      394.9  CC_Mid_Posterior                 105.5971     9.2495    59.0000   122.0000    63.0000 
    122. 

  122.  43 253       382      381.7  CC_Central                       103.2682     6.7079    74.0000   118.0000    44.0000 
    123. 

  123.  44 254       435      435.5  CC_Mid_Anterior                  102.5820     6.8248    66.0000   117.0000    51.0000 
    124. 

  124.  45 255       875      874.7  CC_Anterior                      104.2831     8.0542    55.0000   126.0000    71.0000 
    125.