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- Fri Aug 9 09:39:19 CEST 2013
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002
- /opt/freesurfer/5.3.0/bin/wm-anat-snr --s sub002
- subject sub002
- /opt/freesurfer/5.3.0
- freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
- Linux medusa.ovgu.de 2.6.32-5-amd64 #1 SMP Sun Sep 23 10:07:46 UTC 2012 x86_64 GNU/Linux
- $Id: wm-anat-snr,v 1.2 2011/01/21 23:11:47 greve Exp $
- UpdateOnly 1
- mri_binarize --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/aparc+aseg.mgz --o /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/tmp/wmeroded.mgh --erode 3 --match 2 41 7 46 251 252 253 254 255 77 78 79
- $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
- cwd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002
- cmdline mri_binarize --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/aparc+aseg.mgz --o /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/tmp/wmeroded.mgh --erode 3 --match 2 41 7 46 251 252 253 254 255 77 78 79
- sysname Linux
- hostname medusa.ovgu.de
- machine x86_64
- user fkaule
- input /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/aparc+aseg.mgz
- frame 0
- nErode3d 3
- nErode2d 0
- output /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/tmp/wmeroded.mgh
- Binarizing based on matching values
- nMatch 12
- 0 2
- 1 41
- 2 7
- 3 46
- 4 251
- 5 252
- 6 253
- 7 254
- 8 255
- 9 77
- 10 78
- 11 79
- binval 1
- binvalnot 0
- Found 580360 values in range
- Eroding 3 voxels in 3d
- Counting number of voxels
- Found 55548 voxels in final mask
- mri_binarize done
- mri_segstats --snr --seg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/tmp/wmeroded.mgh --sum /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/tmp/wmeroded.sum --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/norm.mgz --excludeid 0
- $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
- cwd
- cmdline mri_segstats --snr --seg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/tmp/wmeroded.mgh --sum /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/tmp/wmeroded.sum --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/norm.mgz --excludeid 0
- sysname Linux
- hostname medusa.ovgu.de
- machine x86_64
- user fkaule
- UseRobust 0
- Loading /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/tmp/wmeroded.mgh
- Loading /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/norm.mgz
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 2 segmentations
- Computing statistics for each segmentation
- 1 1 55548 55548.000
- Reporting on 1 segmentations
- mri_segstats done
- sub002 17.84 106.04 5.94 55548 3
- Fri Aug 9 09:39:41 CEST 2013
- wm-anat-snr done
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