mri_nu_correct.mni.log.bak 7.2 KB

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  1. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri
  2. /opt/freesurfer/5.3.0/bin/mri_nu_correct.mni
  3. --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz
  4. nIters 1
  5. $Id: mri_nu_correct.mni,v 1.18.2.1 2013/01/09 21:23:42 nicks Exp $
  6. Linux snake5 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
  7. Thu Aug 8 10:55:15 CEST 2013
  8. Program nu_correct, built from:
  9. Package MNI N3, version 1.10, compiled by nicks@minerva (x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37
  10. tmpdir is ./tmp.mri_nu_correct.mni.4552
  11. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri
  12. mri_convert orig.mgz ./tmp.mri_nu_correct.mni.4552/nu0.mnc -odt float
  13. mri_convert orig.mgz ./tmp.mri_nu_correct.mni.4552/nu0.mnc -odt float
  14. $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
  15. reading from orig.mgz...
  16. TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
  17. i_ras = (-1, 4.19095e-09, 0)
  18. j_ras = (0, 1.49012e-08, -1)
  19. k_ras = (0, 1, 0)
  20. changing data type from uchar to float (noscale = 0)...
  21. writing to ./tmp.mri_nu_correct.mni.4552/nu0.mnc...
  22. --------------------------------------------------------
  23. Iteration 1 Thu Aug 8 10:55:19 CEST 2013
  24. nu_correct -clobber ./tmp.mri_nu_correct.mni.4552/nu0.mnc ./tmp.mri_nu_correct.mni.4552/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.4552/0/ -iterations 1000 -distance 50
  25. [fkaule@snake5:/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/] [2013-08-08 10:55:19] running:
  26. /opt/freesurfer/5.3.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.4552/0/ ./tmp.mri_nu_correct.mni.4552/nu0.mnc ./tmp.mri_nu_correct.mni.4552/nu1.imp
  27. Processing:.................................................................Done
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  76. Processing:.................................................................Done
  77. Number of iterations: 50
  78. CV of field change: 0.000996929
  79. [fkaule@snake5:/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub002/mri/] [2013-08-08 10:57:07] running:
  80. /opt/freesurfer/5.3.0/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.4552/nu0.mnc ./tmp.mri_nu_correct.mni.4552/0//template.mnc
  81. Transforming slices:......................................................................................Done
  82. Transforming slices:................................................................................................................................................................................................................................................................Done
  83. mri_convert ./tmp.mri_nu_correct.mni.4552/nu1.mnc orig_nu.mgz --like orig.mgz --conform
  84. mri_convert ./tmp.mri_nu_correct.mni.4552/nu1.mnc orig_nu.mgz --like orig.mgz --conform
  85. $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
  86. reading from ./tmp.mri_nu_correct.mni.4552/nu1.mnc...
  87. TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
  88. i_ras = (-1, 4.19095e-09, 0)
  89. j_ras = (0, 1.49012e-08, -1)
  90. k_ras = (0, 1, 0)
  91. Original Data has (1, 1, 1) mm size and (256, 256, 256) voxels.
  92. Data is conformed to 1 mm size and 256 voxels for all directions
  93. INFO: transform src into the like-volume: orig.mgz
  94. changing data type from float to uchar (noscale = 0)...
  95. MRIchangeType: Building histogram
  96. writing to orig_nu.mgz...
  97. Thu Aug 8 10:57:25 CEST 2013
  98. mri_nu_correct.mni done