wmparc.stats 11 KB

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  1. # Title Segmentation Statistics
  2. #
  3. # generating_program mri_segstats
  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub014 --surf-wm-vol --ctab /opt/freesurfer/5.3.0/WMParcStatsLUT.txt --etiv
  6. # sysname Linux
  7. # hostname snake5
  8. # machine x86_64
  9. # user fkaule
  10. # anatomy_type volume
  11. #
  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
  13. # subjectname sub014
  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 178818.696786, mm^3
  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 180365.304487, mm^3
  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 359184.001273, mm^3
  17. # Measure Mask, MaskVol, Mask Volume, 1401220.000000, mm^3
  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1041856.577900, mm^3
  19. # SegVolFile mri/wmparc.mgz
  20. # SegVolFileTimeStamp 2013/08/09 00:13:24
  21. # ColorTable /opt/freesurfer/5.3.0/WMParcStatsLUT.txt
  22. # ColorTableTimeStamp 2013/05/13 23:21:15
  23. # InVolFile mri/norm.mgz
  24. # InVolFileTimeStamp 2013/08/08 12:06:54
  25. # InVolFrame 0
  26. # PVVolFile mri/norm.mgz
  27. # PVVolFileTimeStamp 2013/08/08 12:06:54
  28. # ExcludeSegId 0
  29. # Only reporting non-empty segmentations
  30. # VoxelVolume_mm3 1
  31. # TableCol 1 ColHeader Index
  32. # TableCol 1 FieldName Index
  33. # TableCol 1 Units NA
  34. # TableCol 2 ColHeader SegId
  35. # TableCol 2 FieldName Segmentation Id
  36. # TableCol 2 Units NA
  37. # TableCol 3 ColHeader NVoxels
  38. # TableCol 3 FieldName Number of Voxels
  39. # TableCol 3 Units unitless
  40. # TableCol 4 ColHeader Volume_mm3
  41. # TableCol 4 FieldName Volume
  42. # TableCol 4 Units mm^3
  43. # TableCol 5 ColHeader StructName
  44. # TableCol 5 FieldName Structure Name
  45. # TableCol 5 Units NA
  46. # TableCol 6 ColHeader normMean
  47. # TableCol 6 FieldName Intensity normMean
  48. # TableCol 6 Units MR
  49. # TableCol 7 ColHeader normStdDev
  50. # TableCol 7 FieldName Itensity normStdDev
  51. # TableCol 7 Units MR
  52. # TableCol 8 ColHeader normMin
  53. # TableCol 8 FieldName Intensity normMin
  54. # TableCol 8 Units MR
  55. # TableCol 9 ColHeader normMax
  56. # TableCol 9 FieldName Intensity normMax
  57. # TableCol 9 Units MR
  58. # TableCol 10 ColHeader normRange
  59. # TableCol 10 FieldName Intensity normRange
  60. # TableCol 10 Units MR
  61. # NRows 70
  62. # NTableCols 10
  63. # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
  64. 1 3001 2704 2704.0 wm-lh-bankssts 104.7154 9.8298 60.0000 122.0000 62.0000
  65. 2 3002 2403 2403.3 wm-lh-caudalanteriorcingulate 100.8841 10.3138 44.0000 117.0000 73.0000
  66. 3 3003 5674 5673.9 wm-lh-caudalmiddlefrontal 98.6857 11.3864 62.0000 120.0000 58.0000
  67. 4 3005 2109 2109.3 wm-lh-cuneus 108.2119 10.2492 76.0000 132.0000 56.0000
  68. 5 3006 759 758.6 wm-lh-entorhinal 87.7262 8.7349 66.0000 107.0000 41.0000
  69. 6 3007 5605 5605.3 wm-lh-fusiform 98.9710 11.0338 58.0000 125.0000 67.0000
  70. 7 3008 7394 7393.8 wm-lh-inferiorparietal 104.3402 11.0906 66.0000 124.0000 58.0000
  71. 8 3009 5176 5176.0 wm-lh-inferiortemporal 94.8316 12.5375 57.0000 120.0000 63.0000
  72. 9 3010 3513 3512.5 wm-lh-isthmuscingulate 105.9934 10.5353 20.0000 123.0000 103.0000
  73. 10 3011 5851 5850.5 wm-lh-lateraloccipital 103.4753 10.3879 68.0000 129.0000 61.0000
  74. 11 3012 5275 5274.8 wm-lh-lateralorbitofrontal 98.7411 11.0961 60.0000 120.0000 60.0000
  75. 12 3013 4250 4249.6 wm-lh-lingual 99.2644 10.2334 32.0000 121.0000 89.0000
  76. 13 3014 2281 2280.8 wm-lh-medialorbitofrontal 90.8839 13.3128 36.0000 113.0000 77.0000
  77. 14 3015 4364 4363.6 wm-lh-middletemporal 93.7456 12.1777 62.0000 120.0000 58.0000
  78. 15 3016 1312 1311.7 wm-lh-parahippocampal 93.4678 8.8065 69.0000 116.0000 47.0000
  79. 16 3017 2759 2758.8 wm-lh-paracentral 101.0117 10.2683 70.0000 123.0000 53.0000
  80. 17 3018 2789 2788.5 wm-lh-parsopercularis 99.2995 10.3380 63.0000 117.0000 54.0000
  81. 18 3019 663 662.6 wm-lh-parsorbitalis 97.7755 11.3756 69.0000 120.0000 51.0000
  82. 19 3020 2688 2687.6 wm-lh-parstriangularis 101.6227 9.7258 68.0000 122.0000 54.0000
  83. 20 3021 2648 2647.6 wm-lh-pericalcarine 105.4868 9.4500 65.0000 129.0000 64.0000
  84. 21 3022 6510 6510.3 wm-lh-postcentral 95.7132 11.4702 63.0000 124.0000 61.0000
  85. 22 3023 4101 4100.7 wm-lh-posteriorcingulate 104.2125 11.3583 28.0000 125.0000 97.0000
  86. 23 3024 10902 10902.1 wm-lh-precentral 100.2367 10.3037 63.0000 124.0000 61.0000
  87. 24 3025 7758 7758.4 wm-lh-precuneus 104.0342 10.2101 41.0000 124.0000 83.0000
  88. 25 3026 2511 2511.0 wm-lh-rostralanteriorcingulate 97.9497 12.8027 27.0000 116.0000 89.0000
  89. 26 3027 10752 10751.9 wm-lh-rostralmiddlefrontal 99.8761 10.2309 63.0000 120.0000 57.0000
  90. 27 3028 14636 14635.6 wm-lh-superiorfrontal 96.3967 10.6707 62.0000 119.0000 57.0000
  91. 28 3029 11120 11120.4 wm-lh-superiorparietal 105.8612 10.5021 66.0000 132.0000 66.0000
  92. 29 3030 6690 6690.2 wm-lh-superiortemporal 97.4592 13.0159 61.0000 124.0000 63.0000
  93. 30 3031 6091 6091.2 wm-lh-supramarginal 103.1183 13.0414 59.0000 126.0000 67.0000
  94. 31 3032 156 155.6 wm-lh-frontalpole 89.1228 10.1107 68.0000 107.0000 39.0000
  95. 32 3033 610 609.7 wm-lh-temporalpole 85.6488 10.3408 50.0000 109.0000 59.0000
  96. 33 3034 620 619.8 wm-lh-transversetemporal 101.2257 8.9210 74.0000 120.0000 46.0000
  97. 34 3035 7252 7252.1 wm-lh-insula 99.0797 12.8379 43.0000 125.0000 82.0000
  98. 35 4001 2337 2337.4 wm-rh-bankssts 102.8578 9.5607 60.0000 120.0000 60.0000
  99. 36 4002 3052 3052.5 wm-rh-caudalanteriorcingulate 100.6990 9.3396 46.0000 117.0000 71.0000
  100. 37 4003 5402 5401.9 wm-rh-caudalmiddlefrontal 97.3390 10.9257 64.0000 117.0000 53.0000
  101. 38 4005 1902 1901.7 wm-rh-cuneus 104.6893 11.3984 63.0000 126.0000 63.0000
  102. 39 4006 412 411.7 wm-rh-entorhinal 83.6396 8.5267 65.0000 105.0000 40.0000
  103. 40 4007 4897 4897.1 wm-rh-fusiform 95.9091 11.9925 42.0000 122.0000 80.0000
  104. 41 4008 9892 9891.7 wm-rh-inferiorparietal 103.8569 10.8488 64.0000 125.0000 61.0000
  105. 42 4009 4176 4176.0 wm-rh-inferiortemporal 88.6282 11.4378 59.0000 115.0000 56.0000
  106. 43 4010 3487 3487.0 wm-rh-isthmuscingulate 105.4281 10.1841 21.0000 125.0000 104.0000
  107. 44 4011 6536 6535.7 wm-rh-lateraloccipital 103.3608 10.7888 65.0000 130.0000 65.0000
  108. 45 4012 4995 4994.7 wm-rh-lateralorbitofrontal 101.9674 10.7473 60.0000 123.0000 63.0000
  109. 46 4013 4633 4633.0 wm-rh-lingual 96.8635 11.2604 29.0000 122.0000 93.0000
  110. 47 4014 2793 2792.8 wm-rh-medialorbitofrontal 96.4771 11.8987 52.0000 117.0000 65.0000
  111. 48 4015 5521 5520.7 wm-rh-middletemporal 90.2816 12.5667 55.0000 116.0000 61.0000
  112. 49 4016 1299 1299.2 wm-rh-parahippocampal 91.5894 9.0960 46.0000 112.0000 66.0000
  113. 50 4017 3882 3881.9 wm-rh-paracentral 101.8094 9.0559 69.0000 120.0000 51.0000
  114. 51 4018 2816 2815.8 wm-rh-parsopercularis 99.8159 10.0029 66.0000 118.0000 52.0000
  115. 52 4019 850 850.1 wm-rh-parsorbitalis 98.9849 11.5828 69.0000 123.0000 54.0000
  116. 53 4020 2538 2538.0 wm-rh-parstriangularis 101.7670 9.8494 69.0000 124.0000 55.0000
  117. 54 4021 2447 2447.4 wm-rh-pericalcarine 100.8159 10.2990 60.0000 128.0000 68.0000
  118. 55 4022 5723 5722.9 wm-rh-postcentral 94.7871 11.5550 64.0000 119.0000 55.0000
  119. 56 4023 3659 3658.7 wm-rh-posteriorcingulate 102.6193 10.8961 30.0000 122.0000 92.0000
  120. 57 4024 10382 10382.1 wm-rh-precentral 98.6316 9.7856 61.0000 118.0000 57.0000
  121. 58 4025 8710 8710.3 wm-rh-precuneus 104.2588 10.1853 65.0000 124.0000 59.0000
  122. 59 4026 1491 1490.6 wm-rh-rostralanteriorcingulate 95.2238 12.0792 62.0000 117.0000 55.0000
  123. 60 4027 10595 10594.6 wm-rh-rostralmiddlefrontal 97.8887 10.9682 63.0000 123.0000 60.0000
  124. 61 4028 14544 14543.7 wm-rh-superiorfrontal 95.3599 10.2607 60.0000 117.0000 57.0000
  125. 62 4029 10505 10505.1 wm-rh-superiorparietal 104.2464 10.2708 65.0000 125.0000 60.0000
  126. 63 4030 5880 5879.8 wm-rh-superiortemporal 91.9774 11.0630 60.0000 120.0000 60.0000
  127. 64 4031 6707 6707.0 wm-rh-supramarginal 101.2565 12.5426 62.0000 123.0000 61.0000
  128. 65 4032 150 150.0 wm-rh-frontalpole 88.5241 9.4822 67.0000 107.0000 40.0000
  129. 66 4033 603 603.0 wm-rh-temporalpole 84.8406 9.6610 61.0000 103.0000 42.0000
  130. 67 4034 523 522.7 wm-rh-transversetemporal 99.9923 8.4338 74.0000 119.0000 45.0000
  131. 68 4035 7013 7013.5 wm-rh-insula 96.0612 11.9322 51.0000 123.0000 72.0000
  132. 69 5001 20416 20415.7 Left-UnsegmentedWhiteMatter 104.4538 11.3790 11.0000 126.0000 115.0000
  133. 70 5002 19641 19641.2 Right-UnsegmentedWhiteMatter 103.6063 10.3367 9.0000 126.0000 117.0000