| 123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124 |
- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub013
- # sysname Linux
- # hostname snake4
- # machine x86_64
- # user fkaule
- # anatomy_type volume
- #
- # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- # subjectname sub013
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1015563.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1001019.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1006420.764504, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 236564.460167, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 236162.270398, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 472726.730566, mm^3
- # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 184426.962527, mm^3
- # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 187146.071411, mm^3
- # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 371573.033939, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 58857.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 610075.730566, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 916029.764504, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 904012.764504, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 897748.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1454550.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 1.022453, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.464419, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 25, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 11, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 36, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 993260.928306, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2013/08/08 17:34:20
- # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2013/05/13 23:21:15
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2013/08/08 12:16:17
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2013/08/08 12:16:17
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 5142 5142.2 Left-Lateral-Ventricle 19.0392 13.5944 0.0000 99.0000 99.0000
- 2 5 282 281.8 Left-Inf-Lat-Vent 32.8592 15.2132 2.0000 79.0000 77.0000
- 3 7 12460 12459.5 Left-Cerebellum-White-Matter 88.7580 7.1407 24.0000 113.0000 89.0000
- 4 8 38470 38469.9 Left-Cerebellum-Cortex 60.1120 10.6558 8.0000 115.0000 107.0000
- 5 10 6900 6899.7 Left-Thalamus-Proper 85.5135 10.1561 44.0000 108.0000 64.0000
- 6 11 3733 3732.7 Left-Caudate 70.2376 9.4714 31.0000 109.0000 78.0000
- 7 12 5647 5646.6 Left-Putamen 75.3043 8.7068 35.0000 104.0000 69.0000
- 8 13 2109 2109.2 Left-Pallidum 86.6714 6.6462 54.0000 105.0000 51.0000
- 9 14 779 778.8 3rd-Ventricle 25.1125 14.5714 0.0000 80.0000 80.0000
- 10 15 1206 1206.1 4th-Ventricle 19.2733 11.5931 0.0000 58.0000 58.0000
- 11 16 20741 20741.0 Brain-Stem 82.3110 9.7368 11.0000 119.0000 108.0000
- 12 17 3744 3743.8 Left-Hippocampus 61.6134 9.6359 15.0000 107.0000 92.0000
- 13 18 1472 1471.7 Left-Amygdala 63.0659 8.5324 35.0000 89.0000 54.0000
- 14 24 713 713.0 CSF 35.0928 15.6411 4.0000 87.0000 83.0000
- 15 26 682 682.3 Left-Accumbens-area 61.9796 8.1290 44.0000 92.0000 48.0000
- 16 28 3616 3615.9 Left-VentralDC 88.4201 11.3137 22.0000 115.0000 93.0000
- 17 30 103 103.2 Left-vessel 60.3276 15.9247 20.0000 98.0000 78.0000
- 18 31 1072 1072.0 Left-choroid-plexus 52.2086 17.2080 11.0000 100.0000 89.0000
- 19 43 3592 3591.8 Right-Lateral-Ventricle 20.5746 13.5464 0.0000 75.0000 75.0000
- 20 44 748 748.1 Right-Inf-Lat-Vent 26.1349 15.3275 0.0000 80.0000 80.0000
- 21 46 13477 13477.0 Right-Cerebellum-White-Matter 88.3719 7.1677 23.0000 119.0000 96.0000
- 22 47 40846 40845.9 Right-Cerebellum-Cortex 59.5098 10.8169 6.0000 111.0000 105.0000
- 23 49 6351 6351.1 Right-Thalamus-Proper 80.6897 10.5455 29.0000 106.0000 77.0000
- 24 50 4053 4053.2 Right-Caudate 68.4444 9.7821 26.0000 109.0000 83.0000
- 25 51 6199 6199.4 Right-Putamen 77.1237 7.6854 42.0000 103.0000 61.0000
- 26 52 2049 2048.5 Right-Pallidum 90.7185 6.0351 54.0000 107.0000 53.0000
- 27 53 3746 3745.8 Right-Hippocampus 62.3098 9.3957 33.0000 100.0000 67.0000
- 28 54 1743 1742.6 Right-Amygdala 62.3388 7.7388 38.0000 96.0000 58.0000
- 29 58 863 862.8 Right-Accumbens-area 66.4239 7.9515 33.0000 94.0000 61.0000
- 30 60 3906 3905.6 Right-VentralDC 85.0342 11.6412 21.0000 112.0000 91.0000
- 31 62 100 99.6 Right-vessel 57.1275 12.8785 23.0000 79.0000 56.0000
- 32 63 1256 1255.9 Right-choroid-plexus 53.3746 15.9636 11.0000 108.0000 97.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 711 710.9 WM-hypointensities 75.8528 15.0987 10.0000 115.0000 105.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 9 9.5 non-WM-hypointensities 68.5000 15.2226 44.0000 93.0000 49.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 221 221.4 Optic-Chiasm 72.6761 19.3201 20.0000 112.0000 92.0000
- 41 251 787 786.7 CC_Posterior 105.9649 6.3336 78.0000 120.0000 42.0000
- 42 252 389 388.7 CC_Mid_Posterior 101.1789 10.7997 25.0000 119.0000 94.0000
- 43 253 362 362.1 CC_Central 101.2391 7.0821 70.0000 113.0000 43.0000
- 44 254 342 341.8 CC_Mid_Anterior 100.6914 6.7888 76.0000 114.0000 38.0000
- 45 255 681 681.2 CC_Anterior 103.0103 8.5390 49.0000 123.0000 74.0000
|
