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T2raw.dat.log

T2raw.dat.log 45 KB
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  1. Logfile for bbregister
    2. 

  2. Thu Aug  8 21:38:16 CEST 2013
    3. 

  3. 

  4. setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    5. 

  5. cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/scripts
    6. 

  6. /opt/freesurfer/5.3.0/bin/bbregister --s sub013 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/orig/T2raw.mgz --lta /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.lta --init-fsl --T2
    7. 

  7. 

  8. $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $
    9. 

  9. Linux snake4 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
    10. 

  10. FREESURFER_HOME /opt/freesurfer/5.3.0
    11. 

  11. mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii
    12. 

  12. mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii 
    13. 

  13. $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
    14. 

  14. reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/orig/T2raw.mgz...
    15. 

  15. TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
    16. 

  16. i_ras = (-0.996032, 0.0582575, 0.0672728)
    17. 

  17. j_ras = (0.0588709, 0.99824, 0.00717099)
    18. 

  18. k_ras = (0.0667366, -0.011103, 0.997709)
    19. 

  19. writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii...
    20. 

  20. fslregister --s sub013 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister --dof 6 --fsvol brainmask.mgz
    21. 

  21. 

  22. Log file is /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.init.dat.fslregister.log
    23. 

  23. 

  24. Thu Aug  8 21:38:20 CEST 2013
    25. 

  25. --s sub013 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister --dof 6 --fsvol brainmask.mgz
    26. 

  26. $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $
    27. 

  27. snake4
    28. 

  28. Linux snake4 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
    29. 

  29. nIters 1
    30. 

  30. --------------------------------------
    31. 

  31. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/scripts
    32. 

  32. mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/refvol.fslregister.nii
    33. 

  33. mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/refvol.fslregister.nii 
    34. 

  34. $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
    35. 

  35. reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/brainmask.mgz...
    36. 

  36. TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
    37. 

  37. i_ras = (-1, -5.12227e-09, -7.45058e-09)
    38. 

  38. j_ras = (-7.45058e-09, -9.31323e-10, -1)
    39. 

  39. k_ras = (-5.99539e-09, 1, -9.31323e-10)
    40. 

  40. writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/refvol.fslregister.nii...
    41. 

  41. --------------------------------------
    42. 

  42. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/scripts
    43. 

  43. mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/movvol.fslregister.nii --frame 0
    44. 

  44. mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/movvol.fslregister.nii --frame 0 
    45. 

  45. $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
    46. 

  46. reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii...
    47. 

  47. TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
    48. 

  48. i_ras = (-0.996032, 0.0582575, 0.0672728)
    49. 

  49. j_ras = (0.0588709, 0.99824, 0.00717099)
    50. 

  50. k_ras = (0.0667366, -0.011103, 0.997709)
    51. 

  51. keeping frame 0
    52. 

  52. writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/movvol.fslregister.nii...
    53. 

  53. Mov determinant is -0.311062
    54. 

  54. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/scripts
    55. 

  55. tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/movvol.fslregister.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/reg0.1967.dat --regheader --fslregout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.init.dat.fsl.mat0 --s sub013 --noedit
    56. 

  56. tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
    57. 

  57. INFO: no target volume specified, assuming FreeSurfer orig volume.
    58. 

  58. target  volume orig
    59. 

  59. movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/movvol.fslregister.nii
    60. 

  60. reg file       /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/reg0.1967.dat
    61. 

  61. LoadVol        0
    62. 

  62. ZeroCRAS       0
    63. 

  63. $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
    64. 

  64. Diagnostic Level -1
    65. 

  65. INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/orig.mgz
    66. 

  66. Ttarg: --------------------
    67. 

  67. -1.000   0.000   0.000   128.000;
    68. 

  68.  0.000   0.000   1.000  -128.000;
    69. 

  69.  0.000  -1.000   0.000   128.000;
    70. 

  70.  0.000   0.000   0.000   1.000;
    71. 

  71. INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/movvol.fslregister.nii
    72. 

  72. Tmov: --------------------
    73. 

  73. -0.700   0.000   0.000   95.885;
    74. 

  74.  0.000   0.000   0.667  -128.000;
    75. 

  75.  0.000  -0.667   0.000   128.000;
    76. 

  76.  0.000   0.000   0.000   1.000;
    77. 

  77. mkheaderreg = 1, float2int = 0
    78. 

  78. Computing reg from header (and possibly input matrix)
    79. 

  79. ---- Input registration matrix (computed) --------
    80. 

  80.  0.996  -0.058  -0.067  -0.000;
    81. 

  81.  0.067  -0.011   0.998   0.000;
    82. 

  82. -0.059  -0.998  -0.007   0.000;
    83. 

  83.  0.000   0.000   0.000   1.000;
    84. 

  84. ---------------------------------------
    85. 

  85. ---- Input registration matrix --------
    86. 

  86.  0.996  -0.058  -0.067  -0.000;
    87. 

  87.  0.067  -0.011   0.998   0.000;
    88. 

  88. -0.059  -0.998  -0.007   0.000;
    89. 

  89.  0.000   0.000   0.000   1.000;
    90. 

  90. Determinant 1
    91. 

  91. subject = sub013
    92. 

  92. RegMat ---------------------------
    93. 

  93.  0.996  -0.058  -0.067  -0.000;
    94. 

  94.  0.067  -0.011   0.998   0.000;
    95. 

  95. -0.059  -0.998  -0.007   0.000;
    96. 

  96.  0.000   0.000   0.000   1.000;
    97. 

  97. FSLOUTPUTTYPE NIFTI 
    98. 

  98. tkreg2FSL: mov det = -0.311062, ref det = -1
    99. 

  99. Thu Aug  8 21:38:29 CEST 2013
    100. 

  100. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/scripts
    101. 

  101. flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.init.dat.fsl.mat0
    102. 

  102. Thu Aug  8 21:42:56 CEST 2013
    103. 

  103. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/scripts
    104. 

  104. flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.init.dat.fsl.mat -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/5.3.0/bin/flirt.newdefault.20080811.sch
    105. 

  105. tkregister2_cmdl --s sub013 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.init.dat --fslreg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.init.dat.fsl.mat --noedit
    106. 

  106. tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
    107. 

  107. ---- FSL registration matrix --------
    108. 

  108.  0.996  -0.059  -0.069   48.895;
    109. 

  109. -0.069  -0.003  -0.998   262.366;
    110. 

  110.  0.059   0.998  -0.007  -4.941;
    111. 

  111.  0.000   0.000   0.000   1.000;
    112. 

  112. ---------------------------------------
    113. 

  113. INFO: no target volume specified, assuming FreeSurfer orig volume.
    114. 

  114. target  volume orig
    115. 

  115. movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii
    116. 

  116. reg file       /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.init.dat
    117. 

  117. LoadVol        0
    118. 

  118. ZeroCRAS       0
    119. 

  119. $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
    120. 

  120. Diagnostic Level -1
    121. 

  121. INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/orig.mgz
    122. 

  122. Ttarg: --------------------
    123. 

  123. -1.000   0.000   0.000   128.000;
    124. 

  124.  0.000   0.000   1.000  -128.000;
    125. 

  125.  0.000  -1.000   0.000   128.000;
    126. 

  126.  0.000   0.000   0.000   1.000;
    127. 

  127. INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii
    128. 

  128. Tmov: --------------------
    129. 

  129. -0.700   0.000   0.000   95.885;
    130. 

  130.  0.000   0.000   0.667  -128.000;
    131. 

  131.  0.000  -0.667   0.000   128.000;
    132. 

  132.  0.000   0.000   0.000   1.000;
    133. 

  133. mkheaderreg = 0, float2int = 0
    134. 

  134. FSLOUTPUTTYPE NIFTI 
    135. 

  135. fsl2TkReg: mov det = -0.311062, ref det = -1
    136. 

  136. ---- Input registration matrix (computed) --------
    137. 

  137.  0.996  -0.059  -0.069   0.053;
    138. 

  138.  0.069  -0.007   0.998  -0.318;
    139. 

  139. -0.059  -0.998  -0.003  -0.447;
    140. 

  140.  0.000   0.000   0.000   1.000;
    141. 

  141. ---------------------------------------
    142. 

  142. ---- Input registration matrix --------
    143. 

  143.  0.996  -0.059  -0.069   0.053;
    144. 

  144.  0.069  -0.007   0.998  -0.318;
    145. 

  145. -0.059  -0.998  -0.003  -0.447;
    146. 

  146.  0.000   0.000   0.000   1.000;
    147. 

  147. Determinant 1
    148. 

  148. subject = sub013
    149. 

  149. RegMat ---------------------------
    150. 

  150.  0.996  -0.059  -0.069   0.053;
    151. 

  151.  0.069  -0.007   0.998  -0.318;
    152. 

  152. -0.059  -0.998  -0.003  -0.447;
    153. 

  153.  0.000   0.000   0.000   1.000;
    154. 

  154.  
    155. 

  155. Started at Thu Aug 8 21:38:20 CEST 2013 
    156. 

  156. Ended   at Thu Aug  8 21:48:41 CEST 2013
    157. 

  157.  
    158. 

  158. fslregister Done
    159. 

  159.  
    160. 

  160. To check results, run:
    161. 

  161. tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.init.dat --surf orig
    162. 

  162.  
    163. 

  163. mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
    164. 

  164. $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
    165. 

  165. setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    166. 

  166. cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/scripts
    167. 

  167. mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 
    168. 

  168. sysname  Linux
    169. 

  169. hostname snake4
    170. 

  170. machine  x86_64
    171. 

  171. user     fkaule
    172. 

  172. movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii
    173. 

  173. regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.init.dat
    174. 

  174. subject sub013
    175. 

  175. dof 6
    176. 

  176. outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/bbr.pass1.dat
    177. 

  177. UseMask 0
    178. 

  178. UseLH 1
    179. 

  179. UseRH 1
    180. 

  180. nsubsamp 100
    181. 

  181. PenaltySign  -1
    182. 

  182. PenaltySlope 0.500000
    183. 

  183. PenaltyCenter 0.000000
    184. 

  184. surfname white
    185. 

  185. GMProjFrac 0.500000
    186. 

  186. WMProjAbs 2.000000
    187. 

  187. lhcostfile (null)
    188. 

  188. rhcostfile (null)
    189. 

  189. interp  trilinear (1)
    190. 

  190. frame  0
    191. 

  191. TolPowell 0.000100
    192. 

  192. nMaxItersPowell 36
    193. 

  193. n1dmin  3
    194. 

  194. Profile   0
    195. 

  195. Gdiag_no  -1
    196. 

  196. AddNoise  0 (0)
    197. 

  197. SynthSeed 1376072236
    198. 

  198. TransRandMax 0.000000
    199. 

  199. RotRandMax 0.000000
    200. 

  200. Translations 0.000000 0.000000 0.000000
    201. 

  201. Rotations   0.000000 0.000000 0.000000
    202. 

  202. Input reg
    203. 

  203.  0.996  -0.059  -0.069   0.053;
    204. 

  204.  0.069  -0.007   0.998  -0.318;
    205. 

  205. -0.059  -0.998  -0.003  -0.447;
    206. 

  206.  0.000   0.000   0.000   1.000;
    207. 

  207. 

  208. Loading mov
    209. 

  209. Projecting LH Surfs
    210. 

  210. Loading lh.white surf
    211. 

  211. Loading lh.thickness for GM
    212. 

  212. GM Proj: 1 0.500000 2.000000
    213. 

  213. WM Proj: 0 0.500000 2.000000
    214. 

  214. Projecting RH Surfs
    215. 

  215. Loading rh.white surf
    216. 

  216. Loading rh.thickness
    217. 

  217. Projecting RH Surfs
    218. 

  218. Computing relative cost
    219. 

  219.  0  -25.0 -25.0 -25.0   0.972231
    220. 

  220.  1  -25.0 -25.0  25.0   1.028446
    221. 

  221.  2  -25.0  25.0 -25.0   1.019947
    222. 

  222.  3  -25.0  25.0  25.0   0.986119
    223. 

  223.  4   25.0 -25.0 -25.0   1.044645
    224. 

  224.  5   25.0 -25.0  25.0   1.035140
    225. 

  225.  6   25.0  25.0 -25.0   1.040034
    226. 

  226.  7   25.0  25.0  25.0   1.009784
    227. 

  227. REL:  8  0.199005    8.136345  1.017043 rel = 0.195671 
    228. 

  228. Initial costs ----------------
    229. 

  229. Number of surface hits 2437
    230. 

  230. WM  Intensity    62.3080 +/-  10.2189
    231. 

  231. Ctx Intensity    78.4240 +/-   9.8221
    232. 

  232. Pct Contrast     23.1306 +/-  17.3793
    233. 

  233. Cost   0.1990
    234. 

  234. RelCost   0.1957
    235. 

  235. 

  236. ------------------------------------
    237. 

  237. Brute force preopt -4 4 4, n = 729
    238. 

  238.      0  -4.0000  -4.0000  -4.0000  -4.0000  -4.0000  -4.0000      0.9663   0.9663  0.0
    239. 

  239.      3  -4.0000  -4.0000  -4.0000  -4.0000   0.0000  -4.0000      0.9421   0.9421  0.0
    240. 

  240.     15  -4.0000  -4.0000  -4.0000   0.0000   4.0000  -4.0000      0.8810   0.8810  0.0
    241. 

  241.     21  -4.0000  -4.0000  -4.0000   4.0000   0.0000  -4.0000      0.8633   0.8633  0.0
    242. 

  242.     99  -4.0000   0.0000  -4.0000   4.0000  -4.0000  -4.0000      0.8372   0.8372  0.0
    243. 

  243.    102  -4.0000   0.0000  -4.0000   4.0000   0.0000  -4.0000      0.7984   0.7984  0.0
    244. 

  244.    120  -4.0000   0.0000   0.0000   0.0000   0.0000  -4.0000      0.6843   0.6843  0.0
    245. 

  245.    346   0.0000   0.0000  -4.0000   4.0000   0.0000   0.0000      0.6577   0.6577  0.0
    246. 

  246.    364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.1990   0.1990  0.0
    247. 

  247. Brute Force --------------------------
    248. 

  248. Min cost was 0.199005
    249. 

  249. Number of iterations   729
    250. 

  250. Search time 2.008000 sec
    251. 

  251. Parameters at best (transmm, rotdeg)
    252. 

  252.   0.000   0.000   0.000  0.000  0.000  0.000 
    253. 

  253. --------------------------------------------
    254. 

  254. 

  255. Starting Powell Minimization
    256. 

  256. Init Powel Params dof = 6
    257. 

  257. 0 0
    258. 

  258. 1 0
    259. 

  259. 2 0
    260. 

  260. 3 0
    261. 

  261. 4 0
    262. 

  262. 5 0
    263. 

  263.    6  0.382  0.000  0.000  0.000  0.000  0.000   0.1982535587
    264. 

  264.    7  0.205  0.000  0.000  0.000  0.000  0.000   0.1943027456
    265. 

  265.    8  0.199  0.000  0.000  0.000  0.000  0.000   0.1942611206
    266. 

  266.    9  0.158  0.000  0.000  0.000  0.000  0.000   0.1937524912
    267. 

  267.   11  0.135  0.000  0.000  0.000  0.000  0.000   0.1936678826
    268. 

  268.   13  0.143  0.000  0.000  0.000  0.000  0.000   0.1936439196
    269. 

  269.   15  0.142  0.000  0.000  0.000  0.000  0.000   0.1936438361
    270. 

  270.   21  0.142 -0.618  0.000  0.000  0.000  0.000   0.1657325207
    271. 

  271.   23  0.142 -0.460  0.000  0.000  0.000  0.000   0.1560781155
    272. 

  272.   24  0.142 -0.407  0.000  0.000  0.000  0.000   0.1549360548
    273. 

  273.   25  0.142 -0.377  0.000  0.000  0.000  0.000   0.1548001138
    274. 

  274.   26  0.142 -0.381  0.000  0.000  0.000  0.000   0.1547944348
    275. 

  275.   27  0.142 -0.382  0.000  0.000  0.000  0.000   0.1547936044
    276. 

  276.   30  0.142 -0.382  1.000  0.000  0.000  0.000   0.1229966860
    277. 

  277.   34  0.142 -0.382  0.618  0.000  0.000  0.000   0.1076755561
    278. 

  278.   35  0.142 -0.382  0.641  0.000  0.000  0.000   0.1075856362
    279. 

  279.   36  0.142 -0.382  0.646  0.000  0.000  0.000   0.1075382154
    280. 

  280.   38  0.142 -0.382  0.697  0.000  0.000  0.000   0.1067615839
    281. 

  281.   40  0.142 -0.382  0.699  0.000  0.000  0.000   0.1067539974
    282. 

  282.   41  0.142 -0.382  0.703  0.000  0.000  0.000   0.1067503945
    283. 

  283.   42  0.142 -0.382  0.702  0.000  0.000  0.000   0.1067500112
    284. 

  284.   51  0.142 -0.382  0.702  0.020  0.000  0.000   0.1066433208
    285. 

  285.   60  0.142 -0.382  0.702  0.020 -0.145  0.000   0.1050170889
    286. 

  286.   61  0.142 -0.382  0.702  0.020 -0.111  0.000   0.1041409249
    287. 

  287.   62  0.142 -0.382  0.702  0.020 -0.089  0.000   0.1037462441
    288. 

  288.   64  0.142 -0.382  0.702  0.020 -0.084  0.000   0.1037429921
    289. 

  289.   65  0.142 -0.382  0.702  0.020 -0.086  0.000   0.1037393929
    290. 

  290.   74  0.142 -0.382  0.702  0.020 -0.086  0.096   0.1036813602
    291. 

  291.   75  0.142 -0.382  0.702  0.020 -0.086  0.051   0.1033583009
    292. 

  292.   76  0.142 -0.382  0.702  0.020 -0.086  0.050   0.1033467584
    293. 

  293.   77  0.142 -0.382  0.702  0.020 -0.086  0.031   0.1032760635
    294. 

  294.   87  0.153 -0.382  0.702  0.020 -0.086  0.031   0.1028705701
    295. 

  295.   89  0.179 -0.382  0.702  0.020 -0.086  0.031   0.1024035417
    296. 

  296.   90  0.184 -0.382  0.702  0.020 -0.086  0.031   0.1023876730
    297. 

  297.  100  0.184 -0.379  0.702  0.020 -0.086  0.031   0.1023842681
    298. 

  298.  101  0.184 -0.377  0.702  0.020 -0.086  0.031   0.1023820184
    299. 

  299.  114  0.184 -0.377  0.628  0.020 -0.086  0.031   0.1020420236
    300. 

  300.  119  0.184 -0.377  0.626  0.020 -0.086  0.031   0.1020407094
    301. 

  301.  128  0.184 -0.377  0.626  0.071 -0.086  0.031   0.1011136248
    302. 

  302.  129  0.184 -0.377  0.626  0.083 -0.086  0.031   0.1010014543
    303. 

  303.  132  0.184 -0.377  0.626  0.093 -0.086  0.031   0.1009888236
    304. 

  304.  135  0.184 -0.377  0.626  0.096 -0.086  0.031   0.1009876110
    305. 

  305.  137  0.184 -0.377  0.626  0.097 -0.086  0.031   0.1009868929
    306. 

  306.  146  0.184 -0.377  0.626  0.097 -0.114  0.031   0.1009258257
    307. 

  307.  147  0.184 -0.377  0.626  0.097 -0.107  0.031   0.1008687199
    308. 

  308.  148  0.184 -0.377  0.626  0.097 -0.103  0.031   0.1008448537
    309. 

  309.  150  0.184 -0.377  0.626  0.097 -0.100  0.031   0.1008384255
    310. 

  310.  159  0.184 -0.377  0.626  0.097 -0.100  0.133   0.1005889609
    311. 

  311.  160  0.184 -0.377  0.626  0.097 -0.100  0.096   0.1005402290
    312. 

  312.  163  0.184 -0.377  0.626  0.097 -0.100  0.098   0.1005392967
    313. 

  313.  164  0.184 -0.377  0.626  0.097 -0.100  0.099   0.1005392315
    314. 

  314.  166  0.225 -0.373  0.549  0.174 -0.114  0.167   0.0986016390
    315. 

  315.  173  0.238 -0.371  0.526  0.197 -0.118  0.188   0.0983519357
    316. 

  316.  175  0.237 -0.371  0.526  0.197 -0.118  0.188   0.0983517018
    317. 

  317.  177  0.236 -0.371  0.530  0.194 -0.117  0.185   0.0983515185
    318. 

  318.  178  0.237 -0.371  0.528  0.195 -0.117  0.186   0.0983500191
    319. 

  319.  179  0.237 -0.371  0.528  0.195 -0.117  0.186   0.0983499633
    320. 

  320.  181  0.237 -0.371  0.528  0.195 -0.117  0.186   0.0983498389
    321. 

  321.  183  0.237 -0.371  0.528  0.195 -0.117  0.186   0.0983498040
    322. 

  322.  190  0.252 -0.371  0.528  0.195 -0.117  0.186   0.0978493408
    323. 

  323.  192  0.275 -0.371  0.528  0.195 -0.117  0.186   0.0975504975
    324. 

  324.  194  0.271 -0.371  0.528  0.195 -0.117  0.186   0.0975256774
    325. 

  325.  196  0.270 -0.371  0.528  0.195 -0.117  0.186   0.0975248228
    326. 

  326.  206  0.270 -0.432  0.528  0.195 -0.117  0.186   0.0963414289
    327. 

  327.  207  0.270 -0.489  0.528  0.195 -0.117  0.186   0.0963297225
    328. 

  328.  208  0.270 -0.461  0.528  0.195 -0.117  0.186   0.0960463997
    329. 

  329.  210  0.270 -0.465  0.528  0.195 -0.117  0.186   0.0960349158
    330. 

  330.  212  0.270 -0.468  0.528  0.195 -0.117  0.186   0.0960304495
    331. 

  331.  214  0.270 -0.467  0.528  0.195 -0.117  0.186   0.0960302291
    332. 

  332.  222  0.270 -0.467  0.494  0.195 -0.117  0.186   0.0959847427
    333. 

  333.  225  0.270 -0.467  0.499  0.195 -0.117  0.186   0.0959793014
    334. 

  334.  238  0.270 -0.467  0.499  0.195 -0.117  0.194   0.0959435265
    335. 

  335.  239  0.270 -0.467  0.499  0.195 -0.117  0.195   0.0959433137
    336. 

  336.  260  0.269 -0.467  0.500  0.195 -0.117  0.194   0.0959422909
    337. 

  337.  261  0.269 -0.467  0.499  0.195 -0.117  0.194   0.0959421310
    338. 

  338.  262  0.269 -0.467  0.499  0.195 -0.117  0.195   0.0959421295
    339. 

  339.  273  0.281 -0.467  0.499  0.195 -0.117  0.195   0.0959047986
    340. 

  340.  274  0.277 -0.467  0.499  0.195 -0.117  0.195   0.0958835427
    341. 

  341.  286  0.277 -0.458  0.499  0.195 -0.117  0.195   0.0958807946
    342. 

  342.  287  0.277 -0.461  0.499  0.195 -0.117  0.195   0.0958731412
    343. 

  343.  288  0.277 -0.462  0.499  0.195 -0.117  0.195   0.0958722814
    344. 

  344.  297  0.277 -0.462  0.497  0.195 -0.117  0.195   0.0958708586
    345. 

  345.  309  0.277 -0.462  0.497  0.195 -0.117  0.202   0.0958436446
    346. 

  346.  310  0.277 -0.462  0.497  0.195 -0.117  0.201   0.0958426653
    347. 

  347.  319  0.277 -0.462  0.497  0.195 -0.121  0.201   0.0958228382
    348. 

  348.  321  0.277 -0.462  0.497  0.195 -0.124  0.201   0.0958215856
    349. 

  349.  323  0.277 -0.462  0.497  0.195 -0.123  0.201   0.0958203784
    350. 

  350.  330  0.274 -0.462  0.504  0.189 -0.122  0.195   0.0958097485
    351. 

  351.  331  0.274 -0.462  0.502  0.190 -0.122  0.197   0.0958038908
    352. 

  352.  338  0.280 -0.458  0.505  0.185 -0.126  0.199   0.0956715103
    353. 

  353.  341  0.288 -0.450  0.509  0.177 -0.134  0.202   0.0955144890
    354. 

  354.  344  0.293 -0.445  0.512  0.172 -0.139  0.205   0.0954951981
    355. 

  355.  346  0.292 -0.446  0.511  0.174 -0.137  0.204   0.0954908820
    356. 

  356.  347  0.292 -0.446  0.511  0.173 -0.137  0.204   0.0954905818
    357. 

  357.  360  0.298 -0.446  0.500  0.185 -0.139  0.215   0.0954676115
    358. 

  358.  363  0.300 -0.445  0.497  0.188 -0.140  0.217   0.0954629964
    359. 

  359.  364  0.300 -0.445  0.497  0.188 -0.140  0.217   0.0954627163
    360. 

  360.  365  0.300 -0.445  0.496  0.189 -0.140  0.218   0.0954624577
    361. 

  361.  381  0.300 -0.447  0.496  0.189 -0.140  0.218   0.0954621411
    362. 

  362.  389  0.300 -0.447  0.503  0.189 -0.140  0.218   0.0953791791
    363. 

  363.  390  0.300 -0.447  0.532  0.189 -0.140  0.218   0.0953752427
    364. 

  364.  392  0.300 -0.447  0.518  0.189 -0.140  0.218   0.0953114187
    365. 

  365.  395  0.300 -0.447  0.516  0.189 -0.140  0.218   0.0953094998
    366. 

  366.  405  0.300 -0.447  0.516  0.189 -0.140  0.219   0.0953088945
    367. 

  367.  414  0.300 -0.447  0.516  0.189 -0.142  0.219   0.0953011707
    368. 

  368.  416  0.300 -0.447  0.516  0.189 -0.145  0.219   0.0952958854
    369. 

  369.  420  0.305 -0.442  0.519  0.184 -0.149  0.221   0.0952224949
    370. 

  370.  421  0.314 -0.434  0.523  0.176 -0.157  0.225   0.0952181869
    371. 

  371.  422  0.310 -0.438  0.521  0.180 -0.153  0.223   0.0952081729
    372. 

  372.  424  0.308 -0.439  0.520  0.182 -0.152  0.223   0.0952075212
    373. 

  373.  428  0.308 -0.439  0.520  0.181 -0.152  0.223   0.0952072693
    374. 

  374.  431  0.308 -0.439  0.520  0.181 -0.152  0.223   0.0952072016
    375. 

  375.  433  0.308 -0.439  0.520  0.181 -0.152  0.223   0.0952071637
    376. 

  376.  444  0.312 -0.439  0.513  0.188 -0.153  0.229   0.0951838342
    377. 

  377.  445  0.312 -0.439  0.513  0.189 -0.153  0.229   0.0951827663
    378. 

  378.  448  0.313 -0.439  0.511  0.190 -0.153  0.231   0.0951824748
    379. 

  379.  449  0.313 -0.439  0.512  0.190 -0.153  0.230   0.0951822989
    380. 

  380.  450  0.313 -0.439  0.512  0.190 -0.153  0.230   0.0951822278
    381. 

  381.  462  0.313 -0.441  0.512  0.190 -0.153  0.230   0.0951815147
    382. 

  382.  464  0.313 -0.440  0.512  0.190 -0.153  0.230   0.0951814433
    383. 

  383.  473  0.313 -0.440  0.517  0.190 -0.153  0.230   0.0951802039
    384. 

  384.  474  0.313 -0.440  0.514  0.190 -0.153  0.230   0.0951786466
    385. 

  385.  485  0.313 -0.440  0.514  0.190 -0.153  0.224   0.0951564239
    386. 

  386.  487  0.313 -0.440  0.514  0.190 -0.153  0.225   0.0951561667
    387. 

  387.  498  0.313 -0.440  0.514  0.190 -0.154  0.225   0.0951555165
    388. 

  388.  501  0.318 -0.436  0.517  0.185 -0.159  0.227   0.0951450903
    389. 

  389.  505  0.316 -0.438  0.516  0.187 -0.157  0.227   0.0951401775
    390. 

  390.  506  0.316 -0.437  0.516  0.187 -0.157  0.227   0.0951400426
    391. 

  391.  507  0.316 -0.437  0.516  0.186 -0.157  0.227   0.0951399079
    392. 

  392.  510  0.316 -0.437  0.516  0.186 -0.157  0.227   0.0951396984
    393. 

  393.  516  0.324 -0.435  0.513  0.191 -0.163  0.231   0.0951023771
    394. 

  394.  519  0.337 -0.432  0.506  0.199 -0.172  0.237   0.0951012662
    395. 

  395.  520  0.331 -0.434  0.509  0.196 -0.168  0.234   0.0950884853
    396. 

  396.  524  0.330 -0.434  0.510  0.195 -0.167  0.234   0.0950877871
    397. 

  397.  525  0.330 -0.434  0.510  0.195 -0.167  0.234   0.0950877163
    398. 

  398.  527  0.330 -0.434  0.510  0.195 -0.167  0.233   0.0950875332
    399. 

  399.  538  0.326 -0.437  0.508  0.198 -0.164  0.232   0.0950868505
    400. 

  400.  540  0.328 -0.436  0.509  0.196 -0.165  0.233   0.0950830987
    401. 

  401.  541  0.328 -0.436  0.509  0.196 -0.165  0.233   0.0950827721
    402. 

  402.  559  0.328 -0.441  0.509  0.196 -0.165  0.233   0.0950800710
    403. 

  403.  560  0.328 -0.439  0.509  0.196 -0.165  0.233   0.0950769174
    404. 

  404.  569  0.328 -0.439  0.504  0.196 -0.165  0.233   0.0950727105
    405. 

  405.  571  0.328 -0.439  0.506  0.196 -0.165  0.233   0.0950702282
    406. 

  406.  593  0.328 -0.439  0.506  0.196 -0.163  0.233   0.0950684177
    407. 

  407.  596  0.336 -0.437  0.502  0.201 -0.169  0.237   0.0950604466
    408. 

  408.  604  0.336 -0.437  0.502  0.201 -0.169  0.237   0.0950603018
    409. 

  409.  606  0.336 -0.437  0.502  0.201 -0.169  0.237   0.0950601668
    410. 

  410.  616  0.338 -0.435  0.503  0.199 -0.170  0.238   0.0950592442
    411. 

  411.  617  0.337 -0.436  0.503  0.200 -0.170  0.237   0.0950577665
    412. 

  412.  618  0.337 -0.436  0.503  0.200 -0.170  0.237   0.0950574535
    413. 

  413.  621  0.337 -0.436  0.503  0.200 -0.170  0.237   0.0950573218
    414. 

  414.  623  0.337 -0.436  0.503  0.200 -0.169  0.237   0.0950572834
    415. 

  415.  638  0.337 -0.441  0.503  0.200 -0.169  0.237   0.0950513524
    416. 

  416.  639  0.337 -0.440  0.503  0.200 -0.169  0.237   0.0950497348
    417. 

  417.  647  0.337 -0.440  0.501  0.200 -0.169  0.237   0.0950479782
    418. 

  418.  659  0.337 -0.440  0.501  0.200 -0.169  0.239   0.0950451786
    419. 

  419.  670  0.337 -0.440  0.501  0.200 -0.167  0.239   0.0950361125
    420. 

  420.  674  0.345 -0.438  0.498  0.205 -0.172  0.243   0.0950306743
    421. 

  421.  678  0.342 -0.438  0.499  0.203 -0.170  0.241   0.0950283269
    422. 

  422.  681  0.341 -0.439  0.499  0.203 -0.170  0.241   0.0950282125
    423. 

  423.  691  0.347 -0.440  0.496  0.205 -0.171  0.246   0.0949997431
    424. 

  424.  694  0.355 -0.443  0.491  0.208 -0.173  0.253   0.0949550960
    425. 

  425.  698  0.387 -0.454  0.474  0.219 -0.180  0.279   0.0943767921
    426. 

  426.  699  0.392 -0.456  0.471  0.220 -0.181  0.283   0.0942459072
    427. 

  427.  701  0.400 -0.458  0.467  0.223 -0.183  0.289   0.0941860031
    428. 

  428.  702  0.400 -0.458  0.467  0.223 -0.182  0.289   0.0941853953
    429. 

  429.  704  0.399 -0.458  0.467  0.223 -0.182  0.289   0.0941852744
    430. 

  430.  707  0.399 -0.458  0.467  0.223 -0.182  0.289   0.0941851658
    431. 

  431.  720  0.399 -0.458  0.468  0.222 -0.183  0.289   0.0941851206
    432. 

  432.  725  0.399 -0.458  0.468  0.222 -0.183  0.289   0.0941848544
    433. 

  433.  742  0.399 -0.460  0.468  0.222 -0.183  0.289   0.0941796066
    434. 

  434.  751  0.399 -0.460  0.476  0.222 -0.183  0.289   0.0941098465
    435. 

  435.  763  0.399 -0.460  0.476  0.222 -0.183  0.301   0.0941070243
    436. 

  436.  764  0.399 -0.460  0.476  0.222 -0.183  0.295   0.0940813692
    437. 

  437.  772  0.402 -0.459  0.475  0.224 -0.185  0.296   0.0940789319
    438. 

  438.  775  0.404 -0.459  0.474  0.226 -0.186  0.297   0.0940781981
    439. 

  439.  780  0.404 -0.459  0.474  0.226 -0.186  0.297   0.0940779381
    440. 

  440.  791  0.401 -0.458  0.476  0.224 -0.185  0.295   0.0940710890
    441. 

  441.  793  0.401 -0.458  0.475  0.225 -0.186  0.295   0.0940705756
    442. 

  442.  804  0.406 -0.453  0.478  0.220 -0.190  0.297   0.0940659920
    443. 

  443.  808  0.405 -0.455  0.477  0.222 -0.188  0.296   0.0940566667
    444. 

  444.  809  0.404 -0.455  0.477  0.222 -0.188  0.296   0.0940566007
    445. 

  445.  810  0.404 -0.455  0.477  0.222 -0.188  0.296   0.0940563914
    446. 

  446.  817  0.404 -0.455  0.477  0.222 -0.188  0.296   0.0940562946
    447. 

  447.  838  0.404 -0.455  0.480  0.222 -0.188  0.296   0.0940546006
    448. 

  448.  839  0.404 -0.455  0.479  0.222 -0.188  0.296   0.0940535533
    449. 

  449.  850  0.404 -0.455  0.479  0.222 -0.188  0.298   0.0940454353
    450. 

  450.  851  0.404 -0.455  0.479  0.222 -0.188  0.300   0.0940438479
    451. 

  451.  854  0.412 -0.453  0.476  0.227 -0.194  0.304   0.0940160621
    452. 

  452.  857  0.417 -0.452  0.473  0.230 -0.197  0.306   0.0939997968
    453. 

  453.  858  0.420 -0.451  0.472  0.232 -0.199  0.308   0.0939951179
    454. 

  454.  860  0.420 -0.451  0.472  0.231 -0.199  0.307   0.0939946699
    455. 

  455.  865  0.420 -0.451  0.472  0.231 -0.199  0.307   0.0939944196
    456. 

  456.  872  0.416 -0.450  0.474  0.230 -0.198  0.305   0.0939843512
    457. 

  457.  893  0.416 -0.450  0.474  0.230 -0.198  0.305   0.0939843233
    458. 

  458.  896  0.417 -0.450  0.474  0.230 -0.198  0.305   0.0939842467
    459. 

  459.  907  0.417 -0.443  0.474  0.230 -0.198  0.305   0.0939332319
    460. 

  460.  909  0.417 -0.444  0.474  0.230 -0.198  0.305   0.0939321910
    461. 

  461.  917  0.417 -0.444  0.473  0.230 -0.198  0.305   0.0939314924
    462. 

  462.  927  0.417 -0.444  0.473  0.230 -0.198  0.321   0.0939285648
    463. 

  463.  928  0.417 -0.444  0.473  0.230 -0.198  0.313   0.0938909902
    464. 

  464.  932  0.425 -0.442  0.469  0.235 -0.204  0.317   0.0938901181
    465. 

  465.  936  0.421 -0.443  0.471  0.233 -0.202  0.315   0.0938791567
    466. 

  466.  937  0.421 -0.443  0.471  0.233 -0.201  0.315   0.0938784247
    467. 

  467.  939  0.421 -0.443  0.471  0.233 -0.201  0.315   0.0938784152
    468. 

  468.  941  0.421 -0.443  0.471  0.233 -0.201  0.315   0.0938783764
    469. 

  469.  942  0.420 -0.443  0.471  0.233 -0.201  0.315   0.0938783580
    470. 

  470.  953  0.421 -0.444  0.470  0.233 -0.201  0.316   0.0938777360
    471. 

  471.  958  0.421 -0.444  0.470  0.233 -0.201  0.316   0.0938775638
    472. 

  472.  966  0.418 -0.446  0.469  0.236 -0.199  0.314   0.0938649224
    473. 

  473.  968  0.419 -0.446  0.469  0.236 -0.199  0.314   0.0938642090
    474. 

  474.  969  0.419 -0.446  0.469  0.235 -0.199  0.315   0.0938640295
    475. 

  475.  970  0.419 -0.446  0.469  0.235 -0.199  0.315   0.0938639745
    476. 

  476.  972  0.419 -0.446  0.469  0.235 -0.199  0.315   0.0938639611
    477. 

  477.  986  0.419 -0.442  0.469  0.235 -0.199  0.315   0.0938432426
    478. 

  478. 1008  0.419 -0.442  0.469  0.235 -0.199  0.316   0.0938432026
    479. 

  479. 1016  0.420 -0.442  0.469  0.236 -0.200  0.316   0.0938420459
    480. 

  480. 1032  0.422 -0.442  0.468  0.236 -0.200  0.318   0.0938399772
    481. 

  481. 1033  0.421 -0.442  0.468  0.236 -0.200  0.317   0.0938396614
    482. 

  482. 1037  0.421 -0.442  0.468  0.236 -0.200  0.317   0.0938396576
    483. 

  483. 1044  0.421 -0.441  0.466  0.239 -0.199  0.319   0.0938199370
    484. 

  484. 1049  0.421 -0.440  0.464  0.241 -0.198  0.320   0.0938167123
    485. 

  485. 1052  0.421 -0.440  0.464  0.242 -0.198  0.320   0.0938166927
    486. 

  486. 1056  0.421 -0.440  0.464  0.242 -0.198  0.320   0.0938166807
    487. 

  487. 1057  0.421 -0.440  0.464  0.242 -0.198  0.320   0.0938164740
    488. 

  488. 1082  0.421 -0.440  0.464  0.242 -0.198  0.320   0.0938162741
    489. 

  489. 1083  0.421 -0.440  0.464  0.242 -0.198  0.320   0.0938162558
    490. 

  490. 1086  0.421 -0.440  0.464  0.242 -0.198  0.320   0.0938162153
    491. 

  491. 1110  0.421 -0.440  0.464  0.242 -0.198  0.318   0.0938131115
    492. 

  492. 1116  0.416 -0.441  0.466  0.239 -0.194  0.316   0.0938068997
    493. 

  493. 1119  0.417 -0.441  0.466  0.239 -0.195  0.316   0.0938067727
    494. 

  494. 1120  0.417 -0.441  0.466  0.239 -0.195  0.316   0.0938066238
    495. 

  495. 1121  0.417 -0.441  0.466  0.239 -0.195  0.316   0.0938065600
    496. 

  496. 1130  0.417 -0.440  0.465  0.241 -0.195  0.317   0.0938058145
    497. 

  497. 1131  0.417 -0.441  0.465  0.240 -0.195  0.317   0.0938055315
    498. 

  498. 1146  0.417 -0.441  0.465  0.241 -0.194  0.316   0.0938044124
    499. 

  499. 1160  0.418 -0.441  0.464  0.241 -0.194  0.317   0.0938029317
    500. 

  500. 1163  0.418 -0.442  0.464  0.241 -0.194  0.317   0.0938028449
    501. 

  501. 1189  0.418 -0.442  0.464  0.241 -0.194  0.316   0.0938018046
    502. 

  502. 1197  0.417 -0.442  0.464  0.241 -0.194  0.315   0.0938007197
    503. 

  503. 1198  0.416 -0.442  0.465  0.240 -0.193  0.315   0.0938000972
    504. 

  504. 1223  0.416 -0.442  0.465  0.240 -0.193  0.315   0.0937999371
    505. 

  505. Powell done niters = 13
    506. 

  506. Computing relative cost
    507. 

  507.  0  -25.0 -25.0 -25.0   0.994116
    508. 

  508.  1  -25.0 -25.0  25.0   1.021778
    509. 

  509.  2  -25.0  25.0 -25.0   1.019457
    510. 

  510.  3  -25.0  25.0  25.0   1.012021
    511. 

  511.  4   25.0 -25.0 -25.0   1.049738
    512. 

  512.  5   25.0 -25.0  25.0   1.004247
    513. 

  513.  6   25.0  25.0 -25.0   1.055087
    514. 

  514.  7   25.0  25.0  25.0   1.033732
    515. 

  515. REL:  8  0.093800    8.190176  1.023772 rel = 0.0916219 
    516. 

  516. Number of iterations    13
    517. 

  517. Min cost was 0.093800
    518. 

  518. Number of FunctionCalls  1227
    519. 

  519. TolPowell 0.000100
    520. 

  520. nMaxItersPowell 36
    521. 

  521. OptimizationTime 3.244000 sec
    522. 

  522. Parameters at optimum (transmm)  0.41590 -0.44198  0.46493
    523. 

  523. Parameters at optimum (rotdeg)  0.24002 -0.19320  0.31488 
    524. 

  524. Final costs ----------------
    525. 

  525. Number of surface hits 2437
    526. 

  526. WM  Intensity    61.7728 +/-   8.9882
    527. 

  527. Ctx Intensity    78.1765 +/-   8.7876
    528. 

  528. Pct Contrast     23.6733 +/-  14.7923
    529. 

  529. Cost   0.0938
    530. 

  530. RelCost   0.1957
    531. 

  531. Reg at min cost was 
    532. 

  532.  0.996  -0.055  -0.074   0.472;
    533. 

  533.  0.074  -0.003   0.997  -0.758;
    534. 

  534. -0.055  -0.998   0.001   0.017;
    535. 

  535.  0.000   0.000   0.000   1.000;
    536. 

  536. 

  537. Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/bbr.pass1.dat, type = 14 
    538. 

  538. Original Reg 
    539. 

  539.  0.996  -0.059  -0.069   0.053;
    540. 

  540.  0.069  -0.007   0.998  -0.318;
    541. 

  541. -0.059  -0.998  -0.003  -0.447;
    542. 

  542.  0.000   0.000   0.000   1.000;
    543. 

  543. 

  544. Original Reg - Optimal Reg
    545. 

  545.  0.000  -0.003   0.005  -0.419;
    546. 

  546. -0.006  -0.004   0.000   0.440;
    547. 

  547. -0.004   0.000  -0.004  -0.464;
    548. 

  548.  0.000   0.000   0.000   0.000;
    549. 

  549. 

  550. Computing change in lh position
    551. 

  551. LH rmsDiffMean 0.889233
    552. 

  552. Computing change in rh position
    553. 

  553. Surface RMS Diff (mm) 0.869118 1.074054
    554. 

  554. mri_segreg done
    555. 

  555. mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
    556. 

  556. $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
    557. 

  557. setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    558. 

  558. cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/scripts
    559. 

  559. mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 
    560. 

  560. sysname  Linux
    561. 

  561. hostname snake4
    562. 

  562. machine  x86_64
    563. 

  563. user     fkaule
    564. 

  564. movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/template.nii
    565. 

  565. regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/tmp.bbregister.1926/bbr.pass1.dat
    566. 

  566. subject sub013
    567. 

  567. dof 6
    568. 

  568. outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat
    569. 

  569. UseMask 0
    570. 

  570. UseLH 1
    571. 

  571. UseRH 1
    572. 

  572. nsubsamp 1
    573. 

  573. PenaltySign  -1
    574. 

  574. PenaltySlope 0.500000
    575. 

  575. PenaltyCenter 0.000000
    576. 

  576. surfname white
    577. 

  577. GMProjFrac 0.500000
    578. 

  578. WMProjAbs 2.000000
    579. 

  579. lhcostfile (null)
    580. 

  580. rhcostfile (null)
    581. 

  581. interp  trilinear (1)
    582. 

  582. frame  0
    583. 

  583. TolPowell 0.000000
    584. 

  584. nMaxItersPowell 36
    585. 

  585. n1dmin  3
    586. 

  586. Profile   0
    587. 

  587. Gdiag_no  -1
    588. 

  588. AddNoise  0 (0)
    589. 

  589. SynthSeed 1376409012
    590. 

  590. TransRandMax 0.000000
    591. 

  591. RotRandMax 0.000000
    592. 

  592. Translations 0.000000 0.000000 0.000000
    593. 

  593. Rotations   0.000000 0.000000 0.000000
    594. 

  594. Input reg
    595. 

  595.  0.996  -0.055  -0.074   0.472;
    596. 

  596.  0.074  -0.003   0.997  -0.758;
    597. 

  597. -0.055  -0.998   0.001   0.017;
    598. 

  598.  0.000   0.000   0.000   1.000;
    599. 

  599. 

  600. Loading mov
    601. 

  601. Projecting LH Surfs
    602. 

  602. Loading lh.white surf
    603. 

  603. Loading lh.thickness for GM
    604. 

  604. GM Proj: 1 0.500000 2.000000
    605. 

  605. WM Proj: 0 0.500000 2.000000
    606. 

  606. Projecting RH Surfs
    607. 

  607. Loading rh.white surf
    608. 

  608. Loading rh.thickness
    609. 

  609. Projecting RH Surfs
    610. 

  610. Computing relative cost
    611. 

  611.  0  -25.0 -25.0 -25.0   1.007479
    612. 

  612.  1  -25.0 -25.0  25.0   1.008766
    613. 

  613.  2  -25.0  25.0 -25.0   1.020152
    614. 

  614.  3  -25.0  25.0  25.0   1.006316
    615. 

  615.  4   25.0 -25.0 -25.0   1.014987
    616. 

  616.  5   25.0 -25.0  25.0   1.008678
    617. 

  617.  6   25.0  25.0 -25.0   1.013304
    618. 

  618.  7   25.0  25.0  25.0   1.024505
    619. 

  619. REL:  8  0.113576    8.104188  1.013023 rel = 0.112116 
    620. 

  620. Initial costs ----------------
    621. 

  621. Number of surface hits 244221
    622. 

  622. WM  Intensity    62.0302 +/-   8.9942
    623. 

  623. Ctx Intensity    78.0510 +/-   8.8041
    624. 

  624. Pct Contrast     23.0917 +/-  14.9004
    625. 

  625. Cost   0.1136
    626. 

  626. RelCost   0.1121
    627. 

  627. 

  628. ------------------------------------
    629. 

  629. Brute force preopt -0.1 0.1 0.1, n = 729
    630. 

  630.      0  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000      0.1116   0.1116  0.0
    631. 

  631.      1  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000   0.0000      0.1092   0.1092  0.0
    632. 

  632.      3  -0.1000  -0.1000  -0.1000  -0.1000   0.0000  -0.1000      0.1055   0.1055  0.0
    633. 

  633.      6  -0.1000  -0.1000  -0.1000  -0.1000   0.1000  -0.1000      0.1009   0.1009  0.0
    634. 

  634.     15  -0.1000  -0.1000  -0.1000   0.0000   0.1000  -0.1000      0.0995   0.0995  0.0
    635. 

  635.     33  -0.1000  -0.1000   0.0000  -0.1000   0.1000  -0.1000      0.0993   0.0993  0.0
    636. 

  636.     40  -0.1000  -0.1000   0.0000   0.0000   0.0000   0.0000      0.0988   0.0988  0.0
    637. 

  637.     42  -0.1000  -0.1000   0.0000   0.0000   0.1000  -0.1000      0.0987   0.0987  0.0
    638. 

  638.    114  -0.1000   0.0000   0.0000  -0.1000   0.1000  -0.1000      0.0979   0.0979  0.0
    639. 

  639.    120  -0.1000   0.0000   0.0000   0.0000   0.0000  -0.1000      0.0964   0.0964  0.0
    640. 

  640.    138  -0.1000   0.0000   0.1000  -0.1000   0.0000  -0.1000      0.0964   0.0964  0.0
    641. 

  641.    139  -0.1000   0.0000   0.1000  -0.1000   0.0000   0.0000      0.0963   0.0963  0.0
    642. 

  642.    364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.0938   0.0938  0.0
    643. 

  643. Brute Force --------------------------
    644. 

  644. Min cost was 0.093800
    645. 

  645. Number of iterations   729
    646. 

  646. Search time 1.870000 sec
    647. 

  647. Parameters at best (transmm, rotdeg)
    648. 

  648.   0.000   0.000   0.000  0.000  0.000  0.000 
    649. 

  649. --------------------------------------------
    650. 

  650. 

  651. Starting Powell Minimization
    652. 

  652. Init Powel Params dof = 6
    653. 

  653. 0 0
    654. 

  654. 1 0
    655. 

  655. 2 0
    656. 

  656. 3 0
    657. 

  657. 4 0
    658. 

  658. 5 0
    659. 

  659.    7 -0.021  0.000  0.000  0.000  0.000  0.000   0.1135294176
    660. 

  660.    8 -0.020  0.000  0.000  0.000  0.000  0.000   0.1135286163
    661. 

  661.    9 -0.018  0.000  0.000  0.000  0.000  0.000   0.1135278911
    662. 

  662.   11 -0.017  0.000  0.000  0.000  0.000  0.000   0.1135277892
    663. 

  663.   19 -0.017  0.132  0.000  0.000  0.000  0.000   0.1113011632
    664. 

  664.   20 -0.017  0.129  0.000  0.000  0.000  0.000   0.1112914511
    665. 

  665.   21 -0.017  0.121  0.000  0.000  0.000  0.000   0.1112776303
    666. 

  666.   23 -0.017  0.118  0.000  0.000  0.000  0.000   0.1112767325
    667. 

  667.   35 -0.017  0.118 -0.016  0.000  0.000  0.000   0.1112382715
    668. 

  668.   45 -0.017  0.118 -0.016  0.019  0.000  0.000   0.1111700638
    669. 

  669.   46 -0.017  0.118 -0.016  0.017  0.000  0.000   0.1111684413
    670. 

  670.   47 -0.017  0.118 -0.016  0.016  0.000  0.000   0.1111683171
    671. 

  671.   55 -0.017  0.118 -0.016  0.016 -0.027  0.000   0.1110699042
    672. 

  672.   64 -0.017  0.118 -0.016  0.016 -0.027 -0.119   0.1091519266
    673. 

  673.   65 -0.017  0.118 -0.016  0.016 -0.027 -0.123   0.1091500701
    674. 

  674.   66 -0.017  0.118 -0.016  0.016 -0.027 -0.122   0.1091498946
    675. 

  675.   75 -0.091  0.118 -0.016  0.016 -0.027 -0.122   0.1088259361
    676. 

  676.   76 -0.072  0.118 -0.016  0.016 -0.027 -0.122   0.1087821778
    677. 

  677.   78 -0.069  0.118 -0.016  0.016 -0.027 -0.122   0.1087818911
    678. 

  678.   81 -0.070  0.118 -0.016  0.016 -0.027 -0.122   0.1087817409
    679. 

  679.   90 -0.070  0.122 -0.016  0.016 -0.027 -0.122   0.1087780995
    680. 

  680.   92 -0.070  0.123 -0.016  0.016 -0.027 -0.122   0.1087780450
    681. 

  681.  100 -0.070  0.123 -0.045  0.016 -0.027 -0.122   0.1087712278
    682. 

  682.  101 -0.070  0.123 -0.031  0.016 -0.027 -0.122   0.1087554945
    683. 

  683.  111 -0.070  0.123 -0.031  0.029 -0.027 -0.122   0.1087044490
    684. 

  684.  112 -0.070  0.123 -0.031  0.032 -0.027 -0.122   0.1087042297
    685. 

  685.  114 -0.070  0.123 -0.031  0.031 -0.027 -0.122   0.1087039119
    686. 

  686.  122 -0.070  0.123 -0.031  0.031 -0.020 -0.122   0.1086871914
    687. 

  687.  123 -0.070  0.123 -0.031  0.031 -0.014 -0.122   0.1086836675
    688. 

  688.  124 -0.070  0.123 -0.031  0.031 -0.015 -0.122   0.1086834943
    689. 

  689.  125 -0.070  0.123 -0.031  0.031 -0.016 -0.122   0.1086834931
    690. 

  690.  133 -0.070  0.123 -0.031  0.031 -0.016 -0.150   0.1084903958
    691. 

  691.  135 -0.070  0.123 -0.031  0.031 -0.016 -0.155   0.1084862670
    692. 

  692.  138 -0.124  0.128 -0.047  0.047 -0.005 -0.188   0.1081821744
    693. 

  693.  145 -0.138  0.130 -0.051  0.051 -0.002 -0.197   0.1081694152
    694. 

  694.  146 -0.137  0.130 -0.050  0.051 -0.002 -0.197   0.1081692485
    695. 

  695.  147 -0.136  0.129 -0.050  0.050 -0.002 -0.196   0.1081688487
    696. 

  696.  150 -0.135  0.129 -0.050  0.050 -0.003 -0.195   0.1081688077
    697. 

  697.  154 -0.135  0.129 -0.050  0.050 -0.003 -0.195   0.1081688042
    698. 

  698.  162 -0.135  0.129 -0.050  0.050 -0.003 -0.205   0.1081646812
    699. 

  699.  164 -0.135  0.129 -0.050  0.050 -0.003 -0.202   0.1081623440
    700. 

  700.  174 -0.135  0.136 -0.050  0.050 -0.003 -0.202   0.1081504458
    701. 

  701.  175 -0.135  0.138 -0.050  0.050 -0.003 -0.202   0.1081499277
    702. 

  702.  176 -0.135  0.139 -0.050  0.050 -0.003 -0.202   0.1081498112
    703. 

  703.  184 -0.135  0.139 -0.073  0.050 -0.003 -0.202   0.1081089469
    704. 

  704.  186 -0.135  0.139 -0.072  0.050 -0.003 -0.202   0.1081089091
    705. 

  705.  195 -0.135  0.139 -0.072  0.051 -0.003 -0.202   0.1081088372
    706. 

  706.  205 -0.135  0.139 -0.072  0.051 -0.001 -0.202   0.1081086162
    707. 

  707.  212 -0.140  0.139 -0.074  0.053 -0.000 -0.205   0.1081036750
    708. 

  708.  213 -0.142  0.139 -0.074  0.053 -0.000 -0.206   0.1081032060
    709. 

  709.  229 -0.142  0.139 -0.074  0.053 -0.000 -0.207   0.1081030070
    710. 

  710.  247 -0.142  0.139 -0.076  0.053 -0.000 -0.207   0.1081028009
    711. 

  711.  256 -0.142  0.139 -0.076  0.052 -0.000 -0.207   0.1081025567
    712. 

  712.  266 -0.142  0.139 -0.076  0.052  0.001 -0.207   0.1081021056
    713. 

  713.  274 -0.143  0.139 -0.076  0.052  0.001 -0.208   0.1081020312
    714. 

  714.  276 -0.143  0.139 -0.076  0.052  0.001 -0.207   0.1081019884
    715. 

  715.  280 -0.143  0.139 -0.076  0.052  0.001 -0.207   0.1081019876
    716. 

  716.  300 -0.143  0.138 -0.076  0.052  0.001 -0.207   0.1081019387
    717. 

  717.  308 -0.143  0.138 -0.075  0.052  0.001 -0.207   0.1081017032
    718. 

  718.  317 -0.143  0.138 -0.075  0.051  0.001 -0.207   0.1081014471
    719. 

  719.  328 -0.143  0.138 -0.075  0.051  0.002 -0.207   0.1081013979
    720. 

  720.  336 -0.144  0.138 -0.075  0.051  0.002 -0.208   0.1081013652
    721. 

  721.  337 -0.143  0.138 -0.075  0.051  0.002 -0.208   0.1081013280
    722. 

  722.  349 -0.143  0.138 -0.075  0.051  0.002 -0.207   0.1081011917
    723. 

  723.  367 -0.143  0.138 -0.074  0.051  0.002 -0.207   0.1081008778
    724. 

  724.  368 -0.143  0.138 -0.073  0.051  0.002 -0.207   0.1081008578
    725. 

  725.  378 -0.143  0.138 -0.073  0.050  0.002 -0.207   0.1081008337
    726. 

  726.  396 -0.144  0.138 -0.074  0.051  0.003 -0.207   0.1081005968
    727. 

  727.  431 -0.144  0.138 -0.073  0.051  0.003 -0.207   0.1081005519
    728. 

  728.  459 -0.145  0.138 -0.073  0.051  0.003 -0.207   0.1081005364
    729. 

  729. Powell done niters = 7
    730. 

  730. Computing relative cost
    731. 

  731.  0  -25.0 -25.0 -25.0   1.006662
    732. 

  732.  1  -25.0 -25.0  25.0   1.007795
    733. 

  733.  2  -25.0  25.0 -25.0   1.019355
    734. 

  734.  3  -25.0  25.0  25.0   1.007909
    735. 

  735.  4   25.0 -25.0 -25.0   1.014188
    736. 

  736.  5   25.0 -25.0  25.0   1.009912
    737. 

  737.  6   25.0  25.0 -25.0   1.012267
    738. 

  738.  7   25.0  25.0  25.0   1.025412
    739. 

  739. REL:  8  0.108101    8.103502  1.012938 rel = 0.10672 
    740. 

  740. Number of iterations     7
    741. 

  741. Min cost was 0.108101
    742. 

  742. Number of FunctionCalls   522
    743. 

  743. TolPowell 0.000000
    744. 

  744. nMaxItersPowell 36
    745. 

  745. OptimizationTime 50.756000 sec
    746. 

  746. Parameters at optimum (transmm) -0.14454  0.13806 -0.07267
    747. 

  747. Parameters at optimum (rotdeg)  0.05057  0.00263 -0.20736 
    748. 

  748. Final costs ----------------
    749. 

  749. Number of surface hits 244221
    750. 

  750. WM  Intensity    62.0535 +/-   9.0422
    751. 

  751. Ctx Intensity    78.0245 +/-   8.7600
    752. 

  752. Pct Contrast     23.0325 +/-  14.8099
    753. 

  753. Cost   0.1081
    754. 

  754. RelCost   0.1121
    755. 

  755. Reg at min cost was 
    756. 

  756.  0.996  -0.055  -0.071   0.324;
    757. 

  757.  0.071  -0.002   0.997  -0.622;
    758. 

  758. -0.055  -0.998   0.002  -0.056;
    759. 

  759.  0.000   0.000   0.000   1.000;
    760. 

  760. 

  761. Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat, type = 14 
    762. 

  762. Original Reg 
    763. 

  763.  0.996  -0.055  -0.074   0.472;
    764. 

  764.  0.074  -0.003   0.997  -0.758;
    765. 

  765. -0.055  -0.998   0.001   0.017;
    766. 

  766.  0.000   0.000   0.000   1.000;
    767. 

  767. 

  768. Original Reg - Optimal Reg
    769. 

  769. -0.000   0.000  -0.004   0.147;
    770. 

  770.  0.004  -0.001  -0.000  -0.136;
    771. 

  771. -0.000  -0.000  -0.001   0.073;
    772. 

  772.  0.000   0.000   0.000   0.000;
    773. 

  773. 

  774. Computing change in lh position
    775. 

  775. LH rmsDiffMean 0.241364
    776. 

  776. Computing change in rh position
    777. 

  777. Surface RMS Diff (mm) 0.175645 0.372936
    778. 

  778. mri_segreg done
    779. 

  779. tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat --noedit --ltaout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.lta
    780. 

  780. tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
    781. 

  781. INFO: no target volume specified, assuming FreeSurfer orig volume.
    782. 

  782. target  volume orig
    783. 

  783. movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/orig/T2raw.mgz
    784. 

  784. reg file       /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat
    785. 

  785. LoadVol        0
    786. 

  786. ZeroCRAS       0
    787. 

  787. $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
    788. 

  788. Diagnostic Level -1
    789. 

  789. ---- Input registration matrix --------
    790. 

  790.  0.996  -0.055  -0.071   0.324;
    791. 

  791.  0.071  -0.002   0.997  -0.622;
    792. 

  792. -0.055  -0.998   0.002  -0.056;
    793. 

  793.  0.000   0.000   0.000   1.000;
    794. 

  794. float2int = 0
    795. 

  795. ---------------------------------------
    796. 

  796. INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/orig.mgz
    797. 

  797. Ttarg: --------------------
    798. 

  798. -1.000   0.000   0.000   128.000;
    799. 

  799.  0.000   0.000   1.000  -128.000;
    800. 

  800.  0.000  -1.000   0.000   128.000;
    801. 

  801.  0.000   0.000   0.000   1.000;
    802. 

  802. INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/orig/T2raw.mgz
    803. 

  803. Tmov: --------------------
    804. 

  804. -0.700   0.000   0.000   95.885;
    805. 

  805.  0.000   0.000   0.667  -128.000;
    806. 

  806.  0.000  -0.667   0.000   128.000;
    807. 

  807.  0.000   0.000   0.000   1.000;
    808. 

  808. mkheaderreg = 0, float2int = 0
    809. 

  809. ---- Input registration matrix --------
    810. 

  810.  0.996  -0.055  -0.071   0.324;
    811. 

  811.  0.071  -0.002   0.997  -0.622;
    812. 

  812. -0.055  -0.998   0.002  -0.056;
    813. 

  813.  0.000   0.000   0.000   1.000;
    814. 

  814. Determinant 1
    815. 

  815. subject = sub013
    816. 

  816. RegMat ---------------------------
    817. 

  817.  0.996  -0.055  -0.071   0.324;
    818. 

  818.  0.071  -0.002   0.997  -0.622;
    819. 

  819. -0.055  -0.998   0.002  -0.056;
    820. 

  820.  0.000   0.000   0.000   1.000;
    821. 

  821. transformed matrix:
    822. 

  822.  1.000  -0.004   0.004  -0.142;
    823. 

  823.  0.004   1.000   0.009   0.099;
    824. 

  824. -0.004  -0.009   1.000   0.825;
    825. 

  825.  0.000   0.000   0.000   1.000;
    826. 

  826. transformed matrix:
    827. 

  827.  0.697  -0.037  -0.047   48.923;
    828. 

  828. -0.050   0.001  -0.665   261.588;
    829. 

  829.  0.039   0.666  -0.001  -4.878;
    830. 

  830.  0.000   0.000   0.000   1.000;
    831. 

  831. Cleaning up
    832. 

  832.  
    833. 

  833. Started at Thu Aug 8 21:38:16 CEST 2013 
    834. 

  834. Ended   at Thu Aug  8 21:50:23 CEST 2013
    835. 

  835. BBR-Run-Time-Sec 727
    836. 

  836.  
    837. 

  837. bbregister Done
    838. 

  838. To check results, run:
    839. 

  839. tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013/mri/transforms/T2raw.dat --surf
    840.