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- Logfile for bbregister
- Thu Aug 8 21:35:33 CEST 2013
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/scripts
- /opt/freesurfer/5.3.0/bin/bbregister --s sub003 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/orig/T2raw.mgz --lta /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.lta --init-fsl --T2
- $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $
- Linux snake5 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
- FREESURFER_HOME /opt/freesurfer/5.3.0
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/orig/T2raw.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-0.99822, -0.0508489, 0.0311494)
- j_ras = (-0.0512259, 0.998622, -0.0114243)
- k_ras = (0.0305256, 0.0129996, 0.999449)
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii...
- fslregister --s sub003 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister --dof 6 --fsvol brainmask.mgz
- Log file is /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.init.dat.fslregister.log
- Thu Aug 8 21:35:38 CEST 2013
- --s sub003 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister --dof 6 --fsvol brainmask.mgz
- $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $
- snake5
- Linux snake5 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
- nIters 1
- --------------------------------------
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/scripts
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/refvol.fslregister.nii
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/refvol.fslregister.nii
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/brainmask.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 4.65661e-09, -1.86265e-09)
- j_ras = (1.86265e-09, 2.79397e-09, -1)
- k_ras = (-8.3528e-09, 1, -9.31323e-10)
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/refvol.fslregister.nii...
- --------------------------------------
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/scripts
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/movvol.fslregister.nii --frame 0
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/movvol.fslregister.nii --frame 0
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-0.99822, -0.0508489, 0.0311494)
- j_ras = (-0.0512259, 0.998622, -0.0114243)
- k_ras = (0.0305256, 0.0129996, 0.999449)
- keeping frame 0
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/movvol.fslregister.nii...
- Mov determinant is -0.311093
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/scripts
- tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/movvol.fslregister.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/reg0.7616.dat --regheader --fslregout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.init.dat.fsl.mat0 --s sub003 --noedit
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/movvol.fslregister.nii
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/reg0.7616.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/movvol.fslregister.nii
- Tmov: --------------------
- -0.700 0.000 0.000 95.894;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 1, float2int = 0
- Computing reg from header (and possibly input matrix)
- ---- Input registration matrix (computed) --------
- 0.998 0.051 -0.031 -0.000;
- 0.031 0.013 0.999 0.000;
- 0.051 -0.999 0.011 0.000;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- ---- Input registration matrix --------
- 0.998 0.051 -0.031 -0.000;
- 0.031 0.013 0.999 0.000;
- 0.051 -0.999 0.011 0.000;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub003
- RegMat ---------------------------
- 0.998 0.051 -0.031 -0.000;
- 0.031 0.013 0.999 0.000;
- 0.051 -0.999 0.011 0.000;
- 0.000 0.000 0.000 1.000;
- FSLOUTPUTTYPE NIFTI
- tkreg2FSL: mov det = -0.311093, ref det = -1
- Thu Aug 8 21:35:47 CEST 2013
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/scripts
- flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.init.dat.fsl.mat0
- Thu Aug 8 21:40:24 CEST 2013
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/scripts
- flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.init.dat.fsl.mat -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/5.3.0/bin/flirt.newdefault.20080811.sch
- tkregister2_cmdl --s sub003 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.init.dat --fslreg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.init.dat.fsl.mat --noedit
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- ---- FSL registration matrix --------
- 0.998 0.051 -0.033 30.148;
- -0.033 -0.006 -0.999 260.830;
- -0.051 0.999 -0.004 5.216;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.init.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii
- Tmov: --------------------
- -0.700 0.000 0.000 95.894;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 0, float2int = 0
- FSLOUTPUTTYPE NIFTI
- fsl2TkReg: mov det = -0.311093, ref det = -1
- ---- Input registration matrix (computed) --------
- 0.998 0.051 -0.033 0.150;
- 0.033 -0.004 0.999 1.026;
- 0.051 -0.999 -0.006 -0.374;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- ---- Input registration matrix --------
- 0.998 0.051 -0.033 0.150;
- 0.033 -0.004 0.999 1.026;
- 0.051 -0.999 -0.006 -0.374;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub003
- RegMat ---------------------------
- 0.998 0.051 -0.033 0.150;
- 0.033 -0.004 0.999 1.026;
- 0.051 -0.999 -0.006 -0.374;
- 0.000 0.000 0.000 1.000;
-
- Started at Thu Aug 8 21:35:38 CEST 2013
- Ended at Thu Aug 8 21:47:22 CEST 2013
-
- fslregister Done
-
- To check results, run:
- tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.init.dat --surf orig
-
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
- sysname Linux
- hostname snake5
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.init.dat
- subject sub003
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/bbr.pass1.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 100
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000100
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376059224
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.998 0.051 -0.033 0.150;
- 0.033 -0.004 0.999 1.026;
- 0.051 -0.999 -0.006 -0.374;
- 0.000 0.000 0.000 1.000;
- Loading mov
- Projecting LH Surfs
- Loading lh.white surf
- Loading lh.thickness for GM
- GM Proj: 1 0.500000 2.000000
- WM Proj: 0 0.500000 2.000000
- Projecting RH Surfs
- Loading rh.white surf
- Loading rh.thickness
- Projecting RH Surfs
- Computing relative cost
- 0 -25.0 -25.0 -25.0 0.986576
- 1 -25.0 -25.0 25.0 0.983247
- 2 -25.0 25.0 -25.0 1.007463
- 3 -25.0 25.0 25.0 1.044004
- 4 25.0 -25.0 -25.0 1.036276
- 5 25.0 -25.0 25.0 1.040975
- 6 25.0 25.0 -25.0 1.013110
- 7 25.0 25.0 25.0 1.034280
- REL: 8 0.467633 8.145932 1.018241 rel = 0.459255
- Initial costs ----------------
- Number of surface hits 2411
- WM Intensity 67.2941 +/- 13.0305
- Ctx Intensity 80.6970 +/- 18.9236
- Pct Contrast 17.0092 +/- 23.6115
- Cost 0.4676
- RelCost 0.4593
- ------------------------------------
- Brute force preopt -4 4 4, n = 729
- 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9902 0.9902 0.0
- 3 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 -4.0000 0.9857 0.9857 0.0
- 4 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 0.0000 0.9724 0.9724 0.0
- 15 -4.0000 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.8944 0.8944 0.0
- 21 -4.0000 -4.0000 -4.0000 4.0000 0.0000 -4.0000 0.8910 0.8910 0.0
- 39 -4.0000 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.8550 0.8550 0.0
- 102 -4.0000 0.0000 -4.0000 4.0000 0.0000 -4.0000 0.7523 0.7523 0.0
- 120 -4.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.7029 0.7029 0.0
- 346 0.0000 0.0000 -4.0000 4.0000 0.0000 0.0000 0.5969 0.5969 0.0
- 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.4676 0.4676 0.0
- Brute Force --------------------------
- Min cost was 0.467633
- Number of iterations 729
- Search time 2.660000 sec
- Parameters at best (transmm, rotdeg)
- 0.000 0.000 0.000 0.000 0.000 0.000
- --------------------------------------------
- Starting Powell Minimization
- Init Powel Params dof = 6
- 0 0
- 1 0
- 2 0
- 3 0
- 4 0
- 5 0
- 11 0.019 0.000 0.000 0.000 0.000 0.000 0.4675131428
- 12 0.025 0.000 0.000 0.000 0.000 0.000 0.4674809813
- 13 0.036 0.000 0.000 0.000 0.000 0.000 0.4674561091
- 14 0.035 0.000 0.000 0.000 0.000 0.000 0.4674542680
- 15 0.033 0.000 0.000 0.000 0.000 0.000 0.4674534706
- 21 0.033 -1.618 0.000 0.000 0.000 0.000 0.4053029209
- 22 0.033 -1.331 0.000 0.000 0.000 0.000 0.3953529608
- 24 0.033 -0.823 0.000 0.000 0.000 0.000 0.3941499489
- 26 0.033 -1.058 0.000 0.000 0.000 0.000 0.3931425806
- 30 0.033 -1.069 0.000 0.000 0.000 0.000 0.3930436256
- 31 0.033 -1.073 0.000 0.000 0.000 0.000 0.3930194551
- 33 0.033 -1.075 0.000 0.000 0.000 0.000 0.3930114613
- 35 0.033 -1.076 0.000 0.000 0.000 0.000 0.3930113406
- 37 0.033 -1.076 1.000 0.000 0.000 0.000 0.2670190595
- 40 0.033 -1.076 1.618 0.000 0.000 0.000 0.2610119080
- 42 0.033 -1.076 1.345 0.000 0.000 0.000 0.2531224902
- 43 0.033 -1.076 1.352 0.000 0.000 0.000 0.2528559976
- 44 0.033 -1.076 1.423 0.000 0.000 0.000 0.2525060895
- 46 0.033 -1.076 1.394 0.000 0.000 0.000 0.2522172948
- 56 0.033 -1.076 1.394 0.382 0.000 0.000 0.2357375372
- 57 0.033 -1.076 1.394 0.336 0.000 0.000 0.2341538128
- 58 0.033 -1.076 1.394 0.284 0.000 0.000 0.2328213725
- 60 0.033 -1.076 1.394 0.243 0.000 0.000 0.2326645563
- 61 0.033 -1.076 1.394 0.255 0.000 0.000 0.2323784493
- 62 0.033 -1.076 1.394 0.261 0.000 0.000 0.2323630026
- 63 0.033 -1.076 1.394 0.260 0.000 0.000 0.2323600515
- 71 0.033 -1.076 1.394 0.260 0.046 0.000 0.2321164858
- 73 0.033 -1.076 1.394 0.260 0.039 0.000 0.2320909955
- 76 0.033 -1.076 1.394 0.260 0.038 0.000 0.2320871752
- 84 0.033 -1.076 1.394 0.260 0.038 -0.255 0.2288025977
- 85 0.033 -1.076 1.394 0.260 0.038 -0.226 0.2286803540
- 86 0.033 -1.076 1.394 0.260 0.038 -0.213 0.2286702508
- 88 0.033 -1.076 1.394 0.260 0.038 -0.131 0.2283463921
- 90 0.033 -1.076 1.394 0.260 0.038 -0.163 0.2283462069
- 91 0.033 -1.076 1.394 0.260 0.038 -0.147 0.2282822144
- 92 0.033 -1.076 1.394 0.260 0.038 -0.146 0.2282811641
- 93 0.033 -1.076 1.394 0.260 0.038 -0.144 0.2282744338
- 107 0.015 -1.076 1.394 0.260 0.038 -0.144 0.2280284491
- 108 0.016 -1.076 1.394 0.260 0.038 -0.144 0.2280243147
- 109 0.017 -1.076 1.394 0.260 0.038 -0.144 0.2280232614
- 117 0.017 -0.694 1.394 0.260 0.038 -0.144 0.2050094028
- 119 0.017 -0.730 1.394 0.260 0.038 -0.144 0.2047954990
- 120 0.017 -0.727 1.394 0.260 0.038 -0.144 0.2047353044
- 121 0.017 -0.715 1.394 0.260 0.038 -0.144 0.2046219815
- 123 0.017 -0.716 1.394 0.260 0.038 -0.144 0.2046207957
- 132 0.017 -0.716 1.155 0.260 0.038 -0.144 0.2001881173
- 133 0.017 -0.716 1.177 0.260 0.038 -0.144 0.2000120596
- 134 0.017 -0.716 1.199 0.260 0.038 -0.144 0.1999988262
- 135 0.017 -0.716 1.189 0.260 0.038 -0.144 0.1999617517
- 143 0.017 -0.716 1.189 0.642 0.038 -0.144 0.1836026879
- 144 0.017 -0.716 1.189 0.571 0.038 -0.144 0.1826210799
- 145 0.017 -0.716 1.189 0.568 0.038 -0.144 0.1825894435
- 146 0.017 -0.716 1.189 0.450 0.038 -0.144 0.1817752020
- 148 0.017 -0.716 1.189 0.495 0.038 -0.144 0.1817290746
- 149 0.017 -0.716 1.189 0.478 0.038 -0.144 0.1816493584
- 151 0.017 -0.716 1.189 0.481 0.038 -0.144 0.1816467865
- 153 0.017 -0.716 1.189 0.480 0.038 -0.144 0.1816464746
- 162 0.017 -0.716 1.189 0.480 0.066 -0.144 0.1816448783
- 163 0.017 -0.716 1.189 0.480 0.052 -0.144 0.1816346052
- 165 0.017 -0.716 1.189 0.480 0.047 -0.144 0.1816325051
- 166 0.017 -0.716 1.189 0.480 0.049 -0.144 0.1816295590
- 175 0.017 -0.716 1.189 0.480 0.049 -0.258 0.1812482422
- 176 0.017 -0.716 1.189 0.480 0.049 -0.211 0.1808579081
- 177 0.017 -0.716 1.189 0.480 0.049 -0.210 0.1808553024
- 178 0.017 -0.716 1.189 0.480 0.049 -0.200 0.1808404900
- 180 0.017 -0.716 1.189 0.480 0.049 -0.198 0.1808404695
- 181 0.017 -0.716 1.189 0.480 0.049 -0.197 0.1808401222
- 182 0.017 -0.716 1.189 0.480 0.049 -0.190 0.1808362096
- 186 0.017 -0.716 1.189 0.480 0.049 -0.191 0.1808355393
- 187 0.001 -0.357 0.985 0.700 0.061 -0.238 0.1722128821
- 194 0.003 -0.391 1.004 0.679 0.060 -0.233 0.1718116350
- 196 0.003 -0.383 1.000 0.684 0.060 -0.234 0.1717705390
- 206 -0.109 -0.383 1.000 0.684 0.060 -0.234 0.1709969041
- 221 -0.109 -0.383 1.000 0.684 0.060 -0.211 0.1702856055
- 222 -0.109 -0.383 1.000 0.684 0.060 -0.139 0.1688426579
- 225 -0.109 -0.383 1.000 0.684 0.060 -0.133 0.1687721311
- 226 -0.109 -0.383 1.000 0.684 0.060 -0.123 0.1687097224
- 236 -0.109 -0.383 0.737 0.684 0.060 -0.123 0.1573634780
- 239 -0.109 -0.383 0.734 0.684 0.060 -0.123 0.1573594472
- 249 -0.109 -0.383 0.734 0.860 0.060 -0.123 0.1490910204
- 251 -0.109 -0.383 0.734 0.840 0.060 -0.123 0.1490776266
- 253 -0.109 -0.383 0.734 0.849 0.060 -0.123 0.1490195326
- 254 -0.109 -0.383 0.734 0.848 0.060 -0.123 0.1490181004
- 263 -0.109 -0.383 0.734 0.848 0.033 -0.123 0.1486217550
- 264 -0.109 -0.383 0.734 0.848 0.024 -0.123 0.1486186896
- 265 -0.109 -0.383 0.734 0.848 0.028 -0.123 0.1486107347
- 267 -0.109 -0.383 0.734 0.848 0.029 -0.123 0.1486103046
- 275 -0.106 -0.453 0.774 0.806 0.027 -0.114 0.1481831611
- 289 -0.064 -0.453 0.774 0.806 0.027 -0.114 0.1481664275
- 290 -0.084 -0.453 0.774 0.806 0.027 -0.114 0.1480575169
- 301 -0.084 -0.453 0.774 0.806 0.027 -0.153 0.1477852686
- 302 -0.084 -0.453 0.774 0.806 0.027 -0.145 0.1477742506
- 303 -0.084 -0.453 0.774 0.806 0.027 -0.147 0.1477712237
- 304 -0.084 -0.453 0.774 0.806 0.027 -0.148 0.1477709643
- 312 -0.084 -0.453 0.586 0.806 0.027 -0.148 0.1405570570
- 314 -0.084 -0.453 0.592 0.806 0.027 -0.148 0.1405391024
- 315 -0.084 -0.453 0.599 0.806 0.027 -0.148 0.1405186979
- 320 -0.084 -0.453 0.598 0.806 0.027 -0.148 0.1405164413
- 322 -0.084 -0.453 0.597 0.806 0.027 -0.148 0.1405156542
- 329 -0.084 -0.453 0.597 0.938 0.027 -0.148 0.1372059596
- 332 -0.084 -0.453 0.597 0.953 0.027 -0.148 0.1372033284
- 333 -0.084 -0.453 0.597 0.945 0.027 -0.148 0.1371705124
- 336 -0.084 -0.453 0.597 0.944 0.027 -0.148 0.1371703173
- 346 -0.084 -0.453 0.597 0.944 0.055 -0.148 0.1363851946
- 347 -0.084 -0.453 0.597 0.944 0.062 -0.148 0.1363652232
- 348 -0.084 -0.453 0.597 0.944 0.061 -0.148 0.1363640171
- 356 -0.080 -0.533 0.643 0.895 0.058 -0.137 0.1347476246
- 357 -0.080 -0.533 0.643 0.895 0.058 -0.137 0.1347362534
- 358 -0.081 -0.516 0.633 0.906 0.059 -0.139 0.1346805271
- 360 -0.081 -0.522 0.637 0.902 0.059 -0.139 0.1346635519
- 361 -0.081 -0.521 0.636 0.902 0.059 -0.139 0.1346634868
- 363 -0.055 -0.590 0.498 0.999 0.091 -0.163 0.1306214095
- 370 -0.058 -0.581 0.516 0.987 0.087 -0.160 0.1305123469
- 371 -0.058 -0.581 0.516 0.987 0.087 -0.160 0.1305109192
- 372 -0.058 -0.583 0.512 0.989 0.087 -0.161 0.1305000663
- 374 -0.057 -0.583 0.511 0.990 0.088 -0.161 0.1304990943
- 384 -0.094 -0.583 0.511 0.990 0.088 -0.161 0.1303908439
- 385 -0.085 -0.583 0.511 0.990 0.088 -0.161 0.1303653723
- 386 -0.082 -0.583 0.511 0.990 0.088 -0.161 0.1303601038
- 388 -0.080 -0.583 0.511 0.990 0.088 -0.161 0.1303589313
- 389 -0.081 -0.583 0.511 0.990 0.088 -0.161 0.1303587661
- 397 -0.081 -0.583 0.511 0.990 0.088 -0.189 0.1302129309
- 398 -0.081 -0.583 0.511 0.990 0.088 -0.188 0.1302124721
- 399 -0.081 -0.583 0.511 0.990 0.088 -0.187 0.1302111751
- 409 -0.080 -0.590 0.515 0.986 0.087 -0.186 0.1300492376
- 411 -0.079 -0.617 0.530 0.970 0.087 -0.182 0.1298577719
- 412 -0.079 -0.610 0.526 0.974 0.087 -0.183 0.1298386809
- 415 -0.080 -0.607 0.524 0.976 0.087 -0.184 0.1298362414
- 416 -0.079 -0.607 0.525 0.975 0.087 -0.184 0.1298354730
- 417 -0.079 -0.608 0.525 0.975 0.087 -0.184 0.1298353065
- 425 -0.079 -0.608 0.525 0.948 0.087 -0.184 0.1294352107
- 427 -0.079 -0.608 0.525 0.951 0.087 -0.184 0.1294232040
- 430 -0.079 -0.608 0.525 0.952 0.087 -0.184 0.1294205362
- 438 -0.079 -0.608 0.525 0.952 0.063 -0.184 0.1290539386
- 439 -0.079 -0.608 0.525 0.952 0.054 -0.184 0.1289878445
- 440 -0.079 -0.608 0.525 0.952 0.037 -0.184 0.1289744422
- 441 -0.079 -0.608 0.525 0.952 0.044 -0.184 0.1289537906
- 442 -0.079 -0.608 0.525 0.952 0.045 -0.184 0.1289526990
- 449 -0.070 -0.634 0.472 0.989 0.057 -0.193 0.1289489272
- 450 -0.075 -0.621 0.498 0.970 0.051 -0.188 0.1284704510
- 452 -0.074 -0.621 0.498 0.971 0.051 -0.188 0.1284703164
- 465 -0.077 -0.621 0.498 0.971 0.051 -0.188 0.1284661953
- 466 -0.078 -0.621 0.498 0.971 0.051 -0.188 0.1284656516
- 475 -0.078 -0.621 0.498 0.971 0.051 -0.203 0.1283631135
- 476 -0.078 -0.621 0.498 0.971 0.051 -0.208 0.1283598454
- 480 -0.078 -0.621 0.498 0.971 0.051 -0.212 0.1283589260
- 481 -0.078 -0.621 0.498 0.971 0.051 -0.211 0.1283587004
- 482 -0.078 -0.621 0.498 0.971 0.051 -0.210 0.1283582946
- 491 -0.078 -0.619 0.497 0.972 0.051 -0.210 0.1283545845
- 492 -0.078 -0.619 0.497 0.972 0.051 -0.210 0.1283536503
- 502 -0.078 -0.619 0.497 0.963 0.051 -0.210 0.1282398325
- 505 -0.078 -0.619 0.497 0.958 0.051 -0.210 0.1282233966
- 516 -0.078 -0.619 0.497 0.958 0.043 -0.210 0.1281501180
- 518 -0.078 -0.619 0.497 0.958 0.039 -0.210 0.1281414781
- 519 -0.078 -0.619 0.497 0.958 0.038 -0.210 0.1281369757
- 520 -0.078 -0.619 0.497 0.958 0.034 -0.210 0.1281365397
- 522 -0.078 -0.619 0.497 0.958 0.035 -0.210 0.1281323452
- 530 -0.076 -0.624 0.486 0.966 0.038 -0.212 0.1280227170
- 531 -0.076 -0.626 0.482 0.968 0.039 -0.213 0.1280155175
- 532 -0.076 -0.626 0.483 0.968 0.039 -0.213 0.1280147430
- 533 -0.076 -0.626 0.484 0.968 0.038 -0.212 0.1280140471
- 537 -0.076 -0.626 0.483 0.968 0.038 -0.212 0.1280139666
- 548 -0.079 -0.626 0.483 0.968 0.038 -0.212 0.1280115701
- 549 -0.078 -0.626 0.483 0.968 0.038 -0.212 0.1280099384
- 550 -0.077 -0.626 0.483 0.968 0.038 -0.212 0.1280093167
- 559 -0.077 -0.626 0.483 0.968 0.038 -0.211 0.1280093009
- 569 -0.077 -0.619 0.480 0.972 0.039 -0.211 0.1279943915
- 571 -0.077 -0.620 0.480 0.971 0.039 -0.211 0.1279942885
- 581 -0.077 -0.620 0.480 0.966 0.039 -0.211 0.1279674828
- 582 -0.077 -0.620 0.480 0.967 0.039 -0.211 0.1279674502
- 592 -0.077 -0.620 0.480 0.967 0.038 -0.211 0.1279614525
- 593 -0.077 -0.620 0.480 0.967 0.034 -0.211 0.1279500962
- 595 -0.077 -0.620 0.480 0.967 0.033 -0.211 0.1279493426
- 603 -0.076 -0.623 0.473 0.972 0.034 -0.213 0.1279196292
- 605 -0.076 -0.623 0.474 0.971 0.034 -0.212 0.1279175584
- 606 -0.076 -0.623 0.474 0.970 0.034 -0.212 0.1279173460
- 610 -0.077 -0.620 0.465 0.973 0.029 -0.212 0.1278815070
- 617 -0.077 -0.620 0.466 0.973 0.030 -0.212 0.1278798259
- 623 -0.077 -0.620 0.466 0.973 0.030 -0.212 0.1278796220
- 636 -0.079 -0.620 0.466 0.973 0.030 -0.212 0.1278790959
- 638 -0.078 -0.620 0.466 0.973 0.030 -0.212 0.1278787608
- 646 -0.078 -0.620 0.466 0.973 0.030 -0.207 0.1278720852
- 657 -0.078 -0.621 0.467 0.972 0.030 -0.207 0.1278699518
- 680 -0.078 -0.621 0.467 0.972 0.031 -0.207 0.1278692602
- 688 -0.078 -0.620 0.466 0.973 0.031 -0.206 0.1278674976
- 694 -0.078 -0.620 0.466 0.973 0.031 -0.206 0.1278673395
- Powell done niters = 7
- Computing relative cost
- 0 -25.0 -25.0 -25.0 0.968830
- 1 -25.0 -25.0 25.0 1.022399
- 2 -25.0 25.0 -25.0 1.010376
- 3 -25.0 25.0 25.0 1.027400
- 4 25.0 -25.0 -25.0 1.051955
- 5 25.0 -25.0 25.0 1.018903
- 6 25.0 25.0 -25.0 1.019751
- 7 25.0 25.0 25.0 1.046903
- REL: 8 0.127867 8.166515 1.020814 rel = 0.12526
- Number of iterations 7
- Min cost was 0.127867
- Number of FunctionCalls 696
- TolPowell 0.000100
- nMaxItersPowell 36
- OptimizationTime 2.516000 sec
- Parameters at optimum (transmm) -0.07808 -0.62048 0.46589
- Parameters at optimum (rotdeg) 0.97265 0.03053 -0.20650
- Final costs ----------------
- Number of surface hits 2411
- WM Intensity 65.1866 +/- 11.3468
- Ctx Intensity 79.9800 +/- 13.1774
- Pct Contrast 20.3501 +/- 13.6723
- Cost 0.1279
- RelCost 0.4593
- Reg at min cost was
- 0.998 0.051 -0.029 0.075;
- 0.029 0.013 1.000 0.411;
- 0.051 -0.999 0.011 0.109;
- 0.000 0.000 0.000 1.000;
- Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/bbr.pass1.dat, type = 14
- Original Reg
- 0.998 0.051 -0.033 0.150;
- 0.033 -0.004 0.999 1.026;
- 0.051 -0.999 -0.006 -0.374;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- -0.000 0.000 -0.004 0.075;
- 0.004 -0.017 -0.000 0.615;
- -0.000 -0.000 -0.017 -0.483;
- 0.000 0.000 0.000 0.000;
- Computing change in lh position
- LH rmsDiffMean 1.517281
- Computing change in rh position
- Surface RMS Diff (mm) 1.555715 2.412896
- mri_segreg done
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- sysname Linux
- hostname snake5
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/tmp.bbregister.7576/bbr.pass1.dat
- subject sub003
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 1
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000000
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376293067
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.998 0.051 -0.029 0.075;
- 0.029 0.013 1.000 0.411;
- 0.051 -0.999 0.011 0.109;
- 0.000 0.000 0.000 1.000;
- Loading mov
- Projecting LH Surfs
- Loading lh.white surf
- Loading lh.thickness for GM
- GM Proj: 1 0.500000 2.000000
- WM Proj: 0 0.500000 2.000000
- Projecting RH Surfs
- Loading rh.white surf
- Loading rh.thickness
- Projecting RH Surfs
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.012628
- 1 -25.0 -25.0 25.0 1.010317
- 2 -25.0 25.0 -25.0 1.013781
- 3 -25.0 25.0 25.0 1.026243
- 4 25.0 -25.0 -25.0 1.035852
- 5 25.0 -25.0 25.0 1.031547
- 6 25.0 25.0 -25.0 1.028321
- 7 25.0 25.0 25.0 1.031602
- REL: 8 0.133532 8.190292 1.023786 rel = 0.130429
- Initial costs ----------------
- Number of surface hits 240423
- WM Intensity 64.9359 +/- 11.1877
- Ctx Intensity 79.7729 +/- 12.9062
- Pct Contrast 20.4782 +/- 13.8817
- Cost 0.1335
- RelCost 0.1304
- ------------------------------------
- Brute force preopt -0.1 0.1 0.1, n = 729
- 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1323 0.1323 0.0
- 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.1284 0.1284 0.0
- 21 -0.1000 -0.1000 -0.1000 0.1000 0.0000 -0.1000 0.1280 0.1280 0.0
- 99 -0.1000 0.0000 -0.1000 0.1000 -0.1000 -0.1000 0.1271 0.1271 0.0
- Brute Force --------------------------
- Min cost was 0.127104
- Number of iterations 729
- Search time 2.645000 sec
- Parameters at best (transmm, rotdeg)
- -0.100 0.000 -0.100 0.100 -0.100 -0.100
- --------------------------------------------
- Starting Powell Minimization
- Init Powel Params dof = 6
- 0 -0.1
- 1 0
- 2 -0.1
- 3 0.1
- 4 -0.1
- 5 -0.1
- 7 -0.042 0.000 -0.100 0.100 -0.100 -0.100 0.1307987305
- 8 -0.030 0.000 -0.100 0.100 -0.100 -0.100 0.1307770674
- 9 -0.029 0.000 -0.100 0.100 -0.100 -0.100 0.1307765224
- 10 -0.027 0.000 -0.100 0.100 -0.100 -0.100 0.1307761312
- 11 -0.026 0.000 -0.100 0.100 -0.100 -0.100 0.1307759415
- 14 -0.025 0.000 -0.100 0.100 -0.100 -0.100 0.1307759274
- 22 -0.025 0.075 -0.100 0.100 -0.100 -0.100 0.1300930603
- 23 -0.025 0.070 -0.100 0.100 -0.100 -0.100 0.1300780848
- 24 -0.025 0.063 -0.100 0.100 -0.100 -0.100 0.1300697692
- 25 -0.025 0.064 -0.100 0.100 -0.100 -0.100 0.1300695851
- 33 -0.025 0.064 -0.191 0.100 -0.100 -0.100 0.1288568820
- 34 -0.025 0.064 -0.201 0.100 -0.100 -0.100 0.1288540792
- 35 -0.025 0.064 -0.197 0.100 -0.100 -0.100 0.1288519871
- 44 -0.025 0.064 -0.197 0.160 -0.100 -0.100 0.1282988494
- 45 -0.025 0.064 -0.197 0.152 -0.100 -0.100 0.1282747727
- 46 -0.025 0.064 -0.197 0.149 -0.100 -0.100 0.1282723798
- 47 -0.025 0.064 -0.197 0.148 -0.100 -0.100 0.1282721881
- 55 -0.025 0.064 -0.197 0.148 -0.038 -0.100 0.1277993515
- 57 -0.025 0.064 -0.197 0.148 -0.042 -0.100 0.1277987802
- 59 -0.025 0.064 -0.197 0.148 -0.040 -0.100 0.1277982290
- 67 -0.025 0.064 -0.197 0.148 -0.040 -0.034 0.1275387248
- 68 -0.025 0.064 -0.197 0.148 -0.040 -0.051 0.1274734378
- 69 -0.025 0.064 -0.197 0.148 -0.040 -0.055 0.1274698060
- 70 -0.025 0.064 -0.197 0.148 -0.040 -0.056 0.1274694474
- 80 -0.012 0.064 -0.197 0.148 -0.040 -0.056 0.1274541905
- 82 -0.014 0.064 -0.197 0.148 -0.040 -0.056 0.1274531144
- 91 -0.014 0.087 -0.197 0.148 -0.040 -0.056 0.1274297659
- 92 -0.014 0.079 -0.197 0.148 -0.040 -0.056 0.1274225386
- 93 -0.014 0.080 -0.197 0.148 -0.040 -0.056 0.1274222259
- 94 -0.014 0.081 -0.197 0.148 -0.040 -0.056 0.1274222185
- 103 -0.014 0.081 -0.231 0.148 -0.040 -0.056 0.1272575196
- 113 -0.014 0.081 -0.231 0.185 -0.040 -0.056 0.1271104372
- 114 -0.014 0.081 -0.231 0.176 -0.040 -0.056 0.1270789392
- 115 -0.014 0.081 -0.231 0.174 -0.040 -0.056 0.1270777567
- 124 -0.014 0.081 -0.231 0.174 -0.038 -0.056 0.1270736522
- 126 -0.014 0.081 -0.231 0.174 -0.036 -0.056 0.1270728425
- 135 -0.014 0.081 -0.231 0.174 -0.036 -0.045 0.1270528137
- 138 -0.004 0.099 -0.266 0.200 -0.031 -0.033 0.1269067538
- 145 -0.003 0.101 -0.270 0.204 -0.031 -0.032 0.1269045210
- 146 -0.003 0.101 -0.271 0.204 -0.031 -0.032 0.1269043616
- 148 -0.002 0.102 -0.272 0.205 -0.030 -0.031 0.1269041834
- 171 -0.002 0.106 -0.272 0.205 -0.030 -0.031 0.1269024512
- 173 -0.002 0.107 -0.272 0.205 -0.030 -0.031 0.1269023307
- 182 -0.002 0.107 -0.279 0.205 -0.030 -0.031 0.1268956505
- 183 -0.002 0.107 -0.280 0.205 -0.030 -0.031 0.1268956258
- 200 -0.002 0.107 -0.280 0.205 -0.039 -0.031 0.1268924465
- 201 -0.002 0.107 -0.280 0.205 -0.036 -0.031 0.1268905816
- 210 -0.004 0.104 -0.274 0.201 -0.037 -0.033 0.1268869372
- 216 -0.004 0.104 -0.273 0.200 -0.037 -0.033 0.1268869206
- 231 -0.002 0.104 -0.273 0.200 -0.037 -0.033 0.1268861339
- 247 -0.002 0.104 -0.275 0.200 -0.037 -0.033 0.1268854410
- 248 -0.002 0.104 -0.276 0.200 -0.037 -0.033 0.1268853028
- 274 -0.002 0.103 -0.275 0.200 -0.037 -0.034 0.1268852642
- 275 -0.002 0.103 -0.275 0.200 -0.037 -0.034 0.1268852221
- 331 -0.002 0.103 -0.275 0.200 -0.037 -0.034 0.1268851593
- 344 -0.003 0.103 -0.275 0.199 -0.037 -0.034 0.1268851469
- 350 -0.003 0.103 -0.275 0.199 -0.037 -0.034 0.1268851387
- 355 -0.003 0.103 -0.275 0.199 -0.037 -0.034 0.1268851321
- 356 -0.003 0.103 -0.275 0.199 -0.037 -0.034 0.1268851311
- 402 -0.003 0.103 -0.275 0.199 -0.036 -0.034 0.1268851099
- 404 -0.003 0.103 -0.275 0.199 -0.036 -0.034 0.1268850452
- 413 -0.003 0.103 -0.275 0.199 -0.036 -0.034 0.1268850423
- 414 -0.003 0.103 -0.275 0.199 -0.036 -0.034 0.1268850316
- 418 -0.003 0.103 -0.275 0.199 -0.036 -0.034 0.1268850312
- 474 -0.003 0.103 -0.275 0.199 -0.036 -0.034 0.1268850109
- 530 -0.003 0.103 -0.275 0.199 -0.036 -0.034 0.1268850104
- 531 -0.003 0.103 -0.275 0.199 -0.036 -0.034 0.1268850093
- Powell done niters = 7
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.012531
- 1 -25.0 -25.0 25.0 1.011168
- 2 -25.0 25.0 -25.0 1.013170
- 3 -25.0 25.0 25.0 1.026299
- 4 25.0 -25.0 -25.0 1.036595
- 5 25.0 -25.0 25.0 1.032410
- 6 25.0 25.0 -25.0 1.028059
- 7 25.0 25.0 25.0 1.032638
- REL: 8 0.126885 8.192870 1.024109 rel = 0.123898
- Number of iterations 7
- Min cost was 0.126885
- Number of FunctionCalls 534
- TolPowell 0.000000
- nMaxItersPowell 36
- OptimizationTime 62.002000 sec
- Parameters at optimum (transmm) -0.00261 0.10287 -0.27464
- Parameters at optimum (rotdeg) 0.19921 -0.03618 -0.03386
- Final costs ----------------
- Number of surface hits 240423
- WM Intensity 64.9338 +/- 11.2144
- Ctx Intensity 79.7146 +/- 12.8242
- Pct Contrast 20.4261 +/- 13.7529
- Cost 0.1269
- RelCost 0.1304
- Reg at min cost was
- 0.998 0.052 -0.029 0.073;
- 0.028 0.016 0.999 0.513;
- 0.052 -0.999 0.015 -0.164;
- 0.000 0.000 0.000 1.000;
- Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat, type = 14
- Original Reg
- 0.998 0.051 -0.029 0.075;
- 0.029 0.013 1.000 0.411;
- 0.051 -0.999 0.011 0.109;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- 0.000 -0.001 -0.001 0.002;
- 0.001 -0.003 0.000 -0.102;
- -0.001 -0.000 -0.003 0.273;
- 0.000 0.000 0.000 0.000;
- Computing change in lh position
- LH rmsDiffMean 0.217297
- Computing change in rh position
- Surface RMS Diff (mm) 0.199717 0.396121
- mri_segreg done
- tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat --noedit --ltaout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.lta
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/orig/T2raw.mgz
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- ---- Input registration matrix --------
- 0.998 0.052 -0.029 0.073;
- 0.028 0.016 0.999 0.513;
- 0.052 -0.999 0.015 -0.164;
- 0.000 0.000 0.000 1.000;
- float2int = 0
- ---------------------------------------
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/orig/T2raw.mgz
- Tmov: --------------------
- -0.700 0.000 0.000 95.894;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 0, float2int = 0
- ---- Input registration matrix --------
- 0.998 0.052 -0.029 0.073;
- 0.028 0.016 0.999 0.513;
- 0.052 -0.999 0.015 -0.164;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub003
- RegMat ---------------------------
- 0.998 0.052 -0.029 0.073;
- 0.028 0.016 0.999 0.513;
- 0.052 -0.999 0.015 -0.164;
- 0.000 0.000 0.000 1.000;
- transformed matrix:
- 1.000 -0.001 -0.002 -0.083;
- 0.001 1.000 0.003 -0.144;
- 0.002 -0.003 1.000 -0.430;
- 0.000 0.000 0.000 1.000;
- transformed matrix:
- 0.699 0.035 -0.019 29.283;
- -0.020 0.010 -0.666 257.303;
- -0.036 0.666 0.011 2.863;
- 0.000 0.000 0.000 1.000;
- Cleaning up
-
- Started at Thu Aug 8 21:35:33 CEST 2013
- Ended at Thu Aug 8 21:49:20 CEST 2013
- BBR-Run-Time-Sec 827
-
- bbregister Done
- To check results, run:
- tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/transforms/T2raw.dat --surf
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