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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub020
- # sysname Linux
- # hostname snake6
- # machine x86_64
- # user fkaule
- # anatomy_type volume
- #
- # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- # subjectname sub020
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1153612.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1130980.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1133331.673395, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 243626.504947, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 245076.316042, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 488702.820989, mm^3
- # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 232702.933894, mm^3
- # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 233629.918512, mm^3
- # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 466332.852406, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 64321.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 637815.820989, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1039368.673395, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1020437.673395, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1017043.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1600687.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.970061, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.346002, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 12, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 10, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 22, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1189215.603728, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2013/08/08 17:57:15
- # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2013/05/13 23:21:15
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2013/08/08 12:13:12
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2013/08/08 12:13:12
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 10350 10349.6 Left-Lateral-Ventricle 15.3279 13.4346 0.0000 89.0000 89.0000
- 2 5 532 532.0 Left-Inf-Lat-Vent 36.2288 15.3339 0.0000 87.0000 87.0000
- 3 7 14951 14950.9 Left-Cerebellum-White-Matter 87.6143 7.3180 15.0000 116.0000 101.0000
- 4 8 42655 42654.6 Left-Cerebellum-Cortex 57.3781 11.0022 6.0000 111.0000 105.0000
- 5 10 7875 7875.4 Left-Thalamus-Proper 83.9331 10.0308 42.0000 113.0000 71.0000
- 6 11 3600 3599.7 Left-Caudate 65.9722 9.6772 28.0000 108.0000 80.0000
- 7 12 6050 6050.0 Left-Putamen 73.6032 8.7710 20.0000 102.0000 82.0000
- 8 13 2350 2350.3 Left-Pallidum 83.6240 8.7457 38.0000 110.0000 72.0000
- 9 14 957 956.7 3rd-Ventricle 22.9910 14.9448 0.0000 71.0000 71.0000
- 10 15 2312 2312.3 4th-Ventricle 17.7828 11.0327 0.0000 77.0000 77.0000
- 11 16 23342 23342.3 Brain-Stem 84.5101 9.8017 8.0000 114.0000 106.0000
- 12 17 3867 3867.4 Left-Hippocampus 61.8178 9.8055 10.0000 113.0000 103.0000
- 13 18 1599 1598.9 Left-Amygdala 61.8898 7.8628 22.0000 85.0000 63.0000
- 14 24 687 687.1 CSF 36.2796 13.8334 3.0000 87.0000 84.0000
- 15 26 754 753.6 Left-Accumbens-area 60.3558 8.0008 40.0000 91.0000 51.0000
- 16 28 4171 4171.2 Left-VentralDC 86.4304 11.2823 38.0000 113.0000 75.0000
- 17 30 112 112.5 Left-vessel 60.4715 16.2260 18.0000 87.0000 69.0000
- 18 31 1151 1150.8 Left-choroid-plexus 51.0420 17.1905 11.0000 107.0000 96.0000
- 19 43 4594 4593.9 Right-Lateral-Ventricle 17.6260 13.7833 0.0000 96.0000 96.0000
- 20 44 568 567.5 Right-Inf-Lat-Vent 31.1977 13.4168 1.0000 75.0000 74.0000
- 21 46 15291 15290.7 Right-Cerebellum-White-Matter 87.5390 7.2446 13.0000 116.0000 103.0000
- 22 47 42978 42978.1 Right-Cerebellum-Cortex 57.7539 10.9311 2.0000 110.0000 108.0000
- 23 49 8107 8107.4 Right-Thalamus-Proper 80.5889 10.6722 23.0000 108.0000 85.0000
- 24 50 3975 3975.1 Right-Caudate 64.4037 9.9281 24.0000 114.0000 90.0000
- 25 51 6454 6453.9 Right-Putamen 72.8320 7.9064 30.0000 103.0000 73.0000
- 26 52 2228 2228.2 Right-Pallidum 86.9481 6.9892 53.0000 105.0000 52.0000
- 27 53 4347 4346.9 Right-Hippocampus 58.2851 10.1401 13.0000 101.0000 88.0000
- 28 54 2027 2027.0 Right-Amygdala 60.1676 7.5661 30.0000 89.0000 59.0000
- 29 58 697 696.6 Right-Accumbens-area 64.6195 8.0015 33.0000 97.0000 64.0000
- 30 60 4007 4006.6 Right-VentralDC 84.7388 12.3804 8.0000 113.0000 105.0000
- 31 62 156 156.2 Right-vessel 57.1222 17.0899 6.0000 90.0000 84.0000
- 32 63 1757 1756.7 Right-choroid-plexus 50.5010 15.4021 8.0000 105.0000 97.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1411 1410.7 WM-hypointensities 75.8058 14.2290 13.0000 114.0000 101.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 15 14.6 non-WM-hypointensities 61.0909 17.5035 26.0000 91.0000 65.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 241 241.4 Optic-Chiasm 73.7984 20.9288 13.0000 106.0000 93.0000
- 41 251 661 661.1 CC_Posterior 101.8787 8.3899 58.0000 117.0000 59.0000
- 42 252 371 371.2 CC_Mid_Posterior 100.3949 7.3550 52.0000 115.0000 63.0000
- 43 253 350 350.1 CC_Central 101.6844 6.0464 81.0000 112.0000 31.0000
- 44 254 395 394.6 CC_Mid_Anterior 101.8571 7.5979 69.0000 115.0000 46.0000
- 45 255 746 745.8 CC_Anterior 102.0816 7.0072 62.0000 119.0000 57.0000
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