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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub019 --surf-wm-vol --ctab /opt/freesurfer/5.3.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake6
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub019
    14. 

  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 221964.859174, mm^3
    15. 

  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 224381.682379, mm^3
    16. 

  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 446346.541554, mm^3
    17. 

  17. # Measure Mask, MaskVol, Mask Volume, 1597342.000000, mm^3
    18. 

  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1113384.542379, mm^3
    19. 

  19. # SegVolFile mri/wmparc.mgz 
    20. 

  20. # SegVolFileTimeStamp  2013/08/08 23:24:13 
    21. 

  21. # ColorTable /opt/freesurfer/5.3.0/WMParcStatsLUT.txt 
    22. 

  22. # ColorTableTimeStamp 2013/05/13 23:21:15 
    23. 

  23. # InVolFile  mri/norm.mgz 
    24. 

  24. # InVolFileTimeStamp  2013/08/08 12:16:03 
    25. 

  25. # InVolFrame 0 
    26. 

  26. # PVVolFile  mri/norm.mgz 
    27. 

  27. # PVVolFileTimeStamp  2013/08/08 12:16:03 
    28. 

  28. # ExcludeSegId 0 
    29. 

  29. # Only reporting non-empty segmentations
    30. 

  30. # VoxelVolume_mm3 1 
    31. 

  31. # TableCol  1 ColHeader Index 
    32. 

  32. # TableCol  1 FieldName Index 
    33. 

  33. # TableCol  1 Units     NA 
    34. 

  34. # TableCol  2 ColHeader SegId 
    35. 

  35. # TableCol  2 FieldName Segmentation Id
    36. 

  36. # TableCol  2 Units     NA
    37. 

  37. # TableCol  3 ColHeader NVoxels 
    38. 

  38. # TableCol  3 FieldName Number of Voxels
    39. 

  39. # TableCol  3 Units     unitless
    40. 

  40. # TableCol  4 ColHeader Volume_mm3
    41. 

  41. # TableCol  4 FieldName Volume
    42. 

  42. # TableCol  4 Units     mm^3
    43. 

  43. # TableCol  5 ColHeader StructName
    44. 

  44. # TableCol  5 FieldName Structure Name
    45. 

  45. # TableCol  5 Units     NA
    46. 

  46. # TableCol  6 ColHeader normMean 
    47. 

  47. # TableCol  6 FieldName Intensity normMean
    48. 

  48. # TableCol  6 Units     MR
    49. 

  49. # TableCol  7 ColHeader normStdDev
    50. 

  50. # TableCol  7 FieldName Itensity normStdDev
    51. 

  51. # TableCol  7 Units     MR
    52. 

  52. # TableCol  8 ColHeader normMin
    53. 

  53. # TableCol  8 FieldName Intensity normMin
    54. 

  54. # TableCol  8 Units     MR
    55. 

  55. # TableCol  9 ColHeader normMax
    56. 

  56. # TableCol  9 FieldName Intensity normMax
    57. 

  57. # TableCol  9 Units     MR
    58. 

  58. # TableCol 10 ColHeader normRange
    59. 

  59. # TableCol 10 FieldName Intensity normRange
    60. 

  60. # TableCol 10 Units     MR
    61. 

  61. # NRows 70 
    62. 

  62. # NTableCols 10 
    63. 

  63. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    64. 

  64.   1 3001      2829     2829.0  wm-lh-bankssts                   103.9211     9.9920    67.0000   122.0000    55.0000 
    65. 

  65.   2 3002      3273     3273.4  wm-lh-caudalanteriorcingulate    102.7139     7.0600    67.0000   116.0000    49.0000 
    66. 

  66.   3 3003      6372     6372.3  wm-lh-caudalmiddlefrontal         98.9627     9.5921    62.0000   116.0000    54.0000 
    67. 

  67.   4 3005      2557     2556.8  wm-lh-cuneus                     103.2684     9.0516    73.0000   120.0000    47.0000 
    68. 

  68.   5 3006       903      902.7  wm-lh-entorhinal                  89.4005     9.5992    62.0000   111.0000    49.0000 
    69. 

  69.   6 3007      7849     7849.4  wm-lh-fusiform                    99.1671    10.2811    60.0000   123.0000    63.0000 
    70. 

  70.   7 3008     10230    10230.0  wm-lh-inferiorparietal           104.5113    11.1067    65.0000   129.0000    64.0000 
    71. 

  71.   8 3009      7341     7341.1  wm-lh-inferiortemporal            94.7853    12.3963    60.0000   122.0000    62.0000 
    72. 

  72.   9 3010      3810     3810.3  wm-lh-isthmuscingulate           103.2063    11.3947    12.0000   120.0000   108.0000 
    73. 

  73.  10 3011     10658    10658.3  wm-lh-lateraloccipital           100.5394    10.6024    65.0000   125.0000    60.0000 
    74. 

  74.  11 3012      5543     5542.6  wm-lh-lateralorbitofrontal        97.2098    10.8057    55.0000   118.0000    63.0000 
    75. 

  75.  12 3013      5073     5072.9  wm-lh-lingual                     96.4954    10.2844    38.0000   122.0000    84.0000 
    76. 

  76.  13 3014      2567     2566.7  wm-lh-medialorbitofrontal         93.6744    10.9606    55.0000   115.0000    60.0000 
    77. 

  77.  14 3015      6549     6548.9  wm-lh-middletemporal              95.1285    12.4341    57.0000   119.0000    62.0000 
    78. 

  78.  15 3016      1543     1543.0  wm-lh-parahippocampal             95.7907     7.8967    68.0000   112.0000    44.0000 
    79. 

  79.  16 3017      3210     3210.3  wm-lh-paracentral                 98.9080     9.5199    68.0000   119.0000    51.0000 
    80. 

  80.  17 3018      3388     3388.1  wm-lh-parsopercularis             96.2958     9.2518    65.0000   113.0000    48.0000 
    81. 

  81.  18 3019       930      930.5  wm-lh-parsorbitalis               97.4435    10.5230    71.0000   116.0000    45.0000 
    82. 

  82.  19 3020      3011     3010.5  wm-lh-parstriangularis            99.7267     9.6164    67.0000   117.0000    50.0000 
    83. 

  83.  20 3021      3002     3001.9  wm-lh-pericalcarine              101.8788     9.1792    71.0000   122.0000    51.0000 
    84. 

  84.  21 3022      6807     6807.0  wm-lh-postcentral                 94.8724    10.4989    66.0000   119.0000    53.0000 
    85. 

  85.  22 3023      4315     4314.7  wm-lh-posteriorcingulate         104.1354     9.1704    45.0000   120.0000    75.0000 
    86. 

  86.  23 3024     10603    10602.8  wm-lh-precentral                  97.8583     9.4795    68.0000   119.0000    51.0000 
    87. 

  87.  24 3025     10819    10819.3  wm-lh-precuneus                  105.5692     9.6904    49.0000   124.0000    75.0000 
    88. 

  88.  25 3026      2126     2126.0  wm-lh-rostralanteriorcingulate    96.8804    11.8910    24.0000   117.0000    93.0000 
    89. 

  89.  26 3027     12999    12999.0  wm-lh-rostralmiddlefrontal        98.7826    10.3841    61.0000   119.0000    58.0000 
    90. 

  90.  27 3028     17488    17488.3  wm-lh-superiorfrontal             97.1209     9.8756    62.0000   118.0000    56.0000 
    91. 

  91.  28 3029     10942    10942.4  wm-lh-superiorparietal           102.9791    10.5273    66.0000   126.0000    60.0000 
    92. 

  92.  29 3030      7465     7464.9  wm-lh-superiortemporal            97.1935    11.6930    63.0000   123.0000    60.0000 
    93. 

  93.  30 3031      9558     9557.6  wm-lh-supramarginal              102.3009    11.6278    63.0000   124.0000    61.0000 
    94. 

  94.  31 3032       142      141.7  wm-lh-frontalpole                 83.1006     9.0709    63.0000   100.0000    37.0000 
    95. 

  95.  32 3033       697      696.9  wm-lh-temporalpole                85.9878     8.4698    63.0000   103.0000    40.0000 
    96. 

  96.  33 3034       747      746.7  wm-lh-transversetemporal         100.2338     8.4707    75.0000   117.0000    42.0000 
    97. 

  97.  34 3035      7075     7074.6  wm-lh-insula                      97.2579    11.7071    49.0000   121.0000    72.0000 
    98. 

  98.  35 4001      3901     3900.5  wm-rh-bankssts                   104.0301     8.4386    66.0000   121.0000    55.0000 
    99. 

  99.  36 4002      3329     3328.8  wm-rh-caudalanteriorcingulate     99.8937     8.4860    35.0000   115.0000    80.0000 
    100. 

  100.  37 4003      6157     6157.3  wm-rh-caudalmiddlefrontal         97.0901     9.7987    62.0000   119.0000    57.0000 
    101. 

  101.  38 4005      2220     2219.8  wm-rh-cuneus                     100.9768     9.3382    74.0000   118.0000    44.0000 
    102. 

  102.  39 4006       753      753.3  wm-rh-entorhinal                  87.9339    10.1198    40.0000   114.0000    74.0000 
    103. 

  103.  40 4007      6620     6619.9  wm-rh-fusiform                    95.6608    11.1838    40.0000   121.0000    81.0000 
    104. 

  104.  41 4008     10360    10359.9  wm-rh-inferiorparietal           101.7795    11.2700    61.0000   124.0000    63.0000 
    105. 

  105.  42 4009      6456     6456.5  wm-rh-inferiortemporal            90.1492    11.0489    58.0000   114.0000    56.0000 
    106. 

  106.  43 4010      3340     3339.7  wm-rh-isthmuscingulate           104.9518     8.6997     7.0000   122.0000   115.0000 
    107. 

  107.  44 4011     11103    11103.4  wm-rh-lateraloccipital            98.3182    10.4749    62.0000   121.0000    59.0000 
    108. 

  108.  45 4012      5873     5873.2  wm-rh-lateralorbitofrontal       100.2251    10.9032    45.0000   120.0000    75.0000 
    109. 

  109.  46 4013      4773     4772.9  wm-rh-lingual                     96.0876    10.6966    58.0000   122.0000    64.0000 
    110. 

  110.  47 4014      3907     3907.3  wm-rh-medialorbitofrontal         95.5119    12.0415    21.0000   121.0000   100.0000 
    111. 

  111.  48 4015      7624     7624.5  wm-rh-middletemporal              94.4443    11.2224    62.0000   119.0000    57.0000 
    112. 

  112.  49 4016      1577     1576.8  wm-rh-parahippocampal             93.0170     9.2295    38.0000   116.0000    78.0000 
    113. 

  113.  50 4017      3646     3646.3  wm-rh-paracentral                100.4291    10.4219    71.0000   120.0000    49.0000 
    114. 

  114.  51 4018      3334     3333.7  wm-rh-parsopercularis             97.3413     9.4109    59.0000   116.0000    57.0000 
    115. 

  115.  52 4019      1134     1133.8  wm-rh-parsorbitalis               97.5059    10.3375    68.0000   117.0000    49.0000 
    116. 

  116.  53 4020      4018     4018.3  wm-rh-parstriangularis            99.3326     9.5095    69.0000   119.0000    50.0000 
    117. 

  117.  54 4021      2721     2720.8  wm-rh-pericalcarine               99.8140     9.4025    60.0000   121.0000    61.0000 
    118. 

  118.  55 4022      5341     5341.0  wm-rh-postcentral                 98.2800    10.7596    66.0000   119.0000    53.0000 
    119. 

  119.  56 4023      4366     4365.9  wm-rh-posteriorcingulate         103.1264     9.8719    28.0000   122.0000    94.0000 
    120. 

  120.  57 4024     13032    13032.4  wm-rh-precentral                  97.2587    10.1249    66.0000   119.0000    53.0000 
    121. 

  121.  58 4025     10655    10654.8  wm-rh-precuneus                  105.5424     9.2204    45.0000   125.0000    80.0000 
    122. 

  122.  59 4026      2132     2132.1  wm-rh-rostralanteriorcingulate    97.0209    13.4057    24.0000   117.0000    93.0000 
    123. 

  123.  60 4027     13740    13740.4  wm-rh-rostralmiddlefrontal        98.9620    10.1622    59.0000   120.0000    61.0000 
    124. 

  124.  61 4028     19498    19498.1  wm-rh-superiorfrontal             96.8706     9.4007    65.0000   119.0000    54.0000 
    125. 

  125.  62 4029      9158     9158.3  wm-rh-superiorparietal           103.5171    10.0687    71.0000   122.0000    51.0000 
    126. 

  126.  63 4030      5676     5676.2  wm-rh-superiortemporal            94.4544    10.2340    63.0000   118.0000    55.0000 
    127. 

  127.  64 4031      8921     8920.6  wm-rh-supramarginal              103.3008    10.6326    65.0000   123.0000    58.0000 
    128. 

  128.  65 4032       326      325.6  wm-rh-frontalpole                 85.6770     9.9701    62.0000   105.0000    43.0000 
    129. 

  129.  66 4033       640      640.2  wm-rh-temporalpole                82.0664     9.5104    59.0000   106.0000    47.0000 
    130. 

  130.  67 4034       546      546.3  wm-rh-transversetemporal          98.3593     7.9671    75.0000   116.0000    41.0000 
    131. 

  131.  68 4035      7307     7307.3  wm-rh-insula                      94.3037    12.0428    46.0000   119.0000    73.0000 
    132. 

  132.  69 5001     28962    28962.4  Left-UnsegmentedWhiteMatter      105.2617     9.5532    19.0000   127.0000   108.0000 
    133. 

  133.  70 5002     31150    31149.8  Right-UnsegmentedWhiteMatter     104.1634     9.9414    10.0000   124.0000   114.0000 
    134.