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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub018
- # sysname Linux
- # hostname snake5
- # machine x86_64
- # user fkaule
- # anatomy_type volume
- #
- # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- # subjectname sub018
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1156426.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1135637.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1136886.102658, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 262772.780966, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 259118.402757, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 521891.183723, mm^3
- # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 216828.495595, mm^3
- # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 218597.423340, mm^3
- # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 435425.918935, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 63231.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 675025.183723, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1038215.102658, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1021603.102658, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1019373.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1567075.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.978784, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.326352, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 10, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 17, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 27, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1181492.341937, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2013/08/08 18:26:59
- # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2013/05/13 23:21:15
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2013/08/08 12:19:12
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2013/08/08 12:19:12
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 6794 6793.8 Left-Lateral-Ventricle 15.3307 13.4718 0.0000 99.0000 99.0000
- 2 5 648 647.8 Left-Inf-Lat-Vent 29.5494 16.4848 0.0000 100.0000 100.0000
- 3 7 13292 13292.3 Left-Cerebellum-White-Matter 86.3501 8.2703 22.0000 119.0000 97.0000
- 4 8 44830 44830.3 Left-Cerebellum-Cortex 56.6676 10.3269 0.0000 100.0000 100.0000
- 5 10 8046 8045.5 Left-Thalamus-Proper 79.9464 10.4535 34.0000 109.0000 75.0000
- 6 11 3815 3814.9 Left-Caudate 65.9540 9.5983 32.0000 107.0000 75.0000
- 7 12 6339 6339.3 Left-Putamen 72.7945 8.0358 37.0000 101.0000 64.0000
- 8 13 1831 1830.6 Left-Pallidum 83.9249 6.9464 56.0000 106.0000 50.0000
- 9 14 814 814.5 3rd-Ventricle 23.6305 14.5929 0.0000 72.0000 72.0000
- 10 15 2579 2579.2 4th-Ventricle 14.6962 11.1510 0.0000 72.0000 72.0000
- 11 16 21153 21152.5 Brain-Stem 79.7563 10.6774 0.0000 118.0000 118.0000
- 12 17 3717 3717.3 Left-Hippocampus 59.4548 9.3688 23.0000 112.0000 89.0000
- 13 18 1772 1771.7 Left-Amygdala 58.2663 8.4150 30.0000 90.0000 60.0000
- 14 24 988 988.5 CSF 29.2317 14.7560 1.0000 84.0000 83.0000
- 15 26 680 680.4 Left-Accumbens-area 60.2361 6.7630 43.0000 88.0000 45.0000
- 16 28 4406 4406.3 Left-VentralDC 83.3406 11.3092 33.0000 123.0000 90.0000
- 17 30 137 137.1 Left-vessel 59.4384 17.7006 18.0000 88.0000 70.0000
- 18 31 1239 1239.4 Left-choroid-plexus 49.0710 16.6310 8.0000 107.0000 99.0000
- 19 43 6025 6025.4 Right-Lateral-Ventricle 15.7831 12.7564 0.0000 87.0000 87.0000
- 20 44 317 317.4 Right-Inf-Lat-Vent 28.9274 13.5148 0.0000 72.0000 72.0000
- 21 46 13968 13967.8 Right-Cerebellum-White-Matter 86.4239 8.4138 14.0000 122.0000 108.0000
- 22 47 46835 46834.5 Right-Cerebellum-Cortex 55.0745 10.5743 0.0000 98.0000 98.0000
- 23 49 7796 7795.5 Right-Thalamus-Proper 77.4481 10.9006 8.0000 108.0000 100.0000
- 24 50 3946 3946.1 Right-Caudate 63.3714 9.7074 15.0000 93.0000 78.0000
- 25 51 5839 5838.8 Right-Putamen 72.2364 7.8833 25.0000 98.0000 73.0000
- 26 52 2229 2228.6 Right-Pallidum 85.3369 6.8213 56.0000 105.0000 49.0000
- 27 53 3824 3824.0 Right-Hippocampus 57.1290 9.8143 12.0000 102.0000 90.0000
- 28 54 1798 1797.5 Right-Amygdala 58.0244 8.3357 16.0000 85.0000 69.0000
- 29 58 719 719.1 Right-Accumbens-area 63.2278 8.3776 32.0000 95.0000 63.0000
- 30 60 4067 4067.3 Right-VentralDC 82.1180 12.0437 11.0000 113.0000 102.0000
- 31 62 183 183.0 Right-vessel 53.2376 16.8282 8.0000 80.0000 72.0000
- 32 63 1566 1565.6 Right-choroid-plexus 49.1924 15.8440 9.0000 113.0000 104.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1449 1449.2 WM-hypointensities 78.3029 15.9797 1.0000 114.0000 113.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 15 14.9 non-WM-hypointensities 73.5789 12.6593 48.0000 92.0000 44.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 264 263.7 Optic-Chiasm 76.2157 18.9198 14.0000 108.0000 94.0000
- 41 251 879 879.4 CC_Posterior 101.6939 7.3536 56.0000 117.0000 61.0000
- 42 252 427 426.8 CC_Mid_Posterior 97.4588 11.3649 40.0000 116.0000 76.0000
- 43 253 415 415.0 CC_Central 97.3395 6.5573 56.0000 110.0000 54.0000
- 44 254 448 448.0 CC_Mid_Anterior 99.5514 5.6478 81.0000 113.0000 32.0000
- 45 255 883 882.9 CC_Anterior 101.0067 7.4679 54.0000 118.0000 64.0000
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