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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub015 --surf-wm-vol --ctab /opt/freesurfer/5.3.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake5
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub015
    14. 

  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 230316.100932, mm^3
    15. 

  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 230867.465141, mm^3
    16. 

  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 461183.566072, mm^3
    17. 

  17. # Measure Mask, MaskVol, Mask Volume, 1759532.000000, mm^3
    18. 

  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1248043.386577, mm^3
    19. 

  19. # SegVolFile mri/wmparc.mgz 
    20. 

  20. # SegVolFileTimeStamp  2013/08/09 01:27:58 
    21. 

  21. # ColorTable /opt/freesurfer/5.3.0/WMParcStatsLUT.txt 
    22. 

  22. # ColorTableTimeStamp 2013/05/13 23:21:15 
    23. 

  23. # InVolFile  mri/norm.mgz 
    24. 

  24. # InVolFileTimeStamp  2013/08/08 12:15:44 
    25. 

  25. # InVolFrame 0 
    26. 

  26. # PVVolFile  mri/norm.mgz 
    27. 

  27. # PVVolFileTimeStamp  2013/08/08 12:15:44 
    28. 

  28. # ExcludeSegId 0 
    29. 

  29. # Only reporting non-empty segmentations
    30. 

  30. # VoxelVolume_mm3 1 
    31. 

  31. # TableCol  1 ColHeader Index 
    32. 

  32. # TableCol  1 FieldName Index 
    33. 

  33. # TableCol  1 Units     NA 
    34. 

  34. # TableCol  2 ColHeader SegId 
    35. 

  35. # TableCol  2 FieldName Segmentation Id
    36. 

  36. # TableCol  2 Units     NA
    37. 

  37. # TableCol  3 ColHeader NVoxels 
    38. 

  38. # TableCol  3 FieldName Number of Voxels
    39. 

  39. # TableCol  3 Units     unitless
    40. 

  40. # TableCol  4 ColHeader Volume_mm3
    41. 

  41. # TableCol  4 FieldName Volume
    42. 

  42. # TableCol  4 Units     mm^3
    43. 

  43. # TableCol  5 ColHeader StructName
    44. 

  44. # TableCol  5 FieldName Structure Name
    45. 

  45. # TableCol  5 Units     NA
    46. 

  46. # TableCol  6 ColHeader normMean 
    47. 

  47. # TableCol  6 FieldName Intensity normMean
    48. 

  48. # TableCol  6 Units     MR
    49. 

  49. # TableCol  7 ColHeader normStdDev
    50. 

  50. # TableCol  7 FieldName Itensity normStdDev
    51. 

  51. # TableCol  7 Units     MR
    52. 

  52. # TableCol  8 ColHeader normMin
    53. 

  53. # TableCol  8 FieldName Intensity normMin
    54. 

  54. # TableCol  8 Units     MR
    55. 

  55. # TableCol  9 ColHeader normMax
    56. 

  56. # TableCol  9 FieldName Intensity normMax
    57. 

  57. # TableCol  9 Units     MR
    58. 

  58. # TableCol 10 ColHeader normRange
    59. 

  59. # TableCol 10 FieldName Intensity normRange
    60. 

  60. # TableCol 10 Units     MR
    61. 

  61. # NRows 70 
    62. 

  62. # NTableCols 10 
    63. 

  63. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    64. 

  64.   1 3001      3670     3670.5  wm-lh-bankssts                   106.6564     8.7609    72.0000   123.0000    51.0000 
    65. 

  65.   2 3002      3129     3129.1  wm-lh-caudalanteriorcingulate    100.0792     9.5669    36.0000   116.0000    80.0000 
    66. 

  66.   3 3003      6889     6889.4  wm-lh-caudalmiddlefrontal         96.6135     9.2886    64.0000   117.0000    53.0000 
    67. 

  67.   4 3005      2259     2259.1  wm-lh-cuneus                     102.7197    10.9137    70.0000   124.0000    54.0000 
    68. 

  68.   5 3006       730      730.3  wm-lh-entorhinal                  90.0797     9.0985    65.0000   115.0000    50.0000 
    69. 

  69.   6 3007      6866     6866.1  wm-lh-fusiform                    99.1727    10.4606    60.0000   128.0000    68.0000 
    70. 

  70.   7 3008     12299    12299.2  wm-lh-inferiorparietal           108.2298    10.0822    60.0000   130.0000    70.0000 
    71. 

  71.   8 3009      7227     7226.6  wm-lh-inferiortemporal            98.3341    11.8017    59.0000   124.0000    65.0000 
    72. 

  72.   9 3010      3941     3941.4  wm-lh-isthmuscingulate           104.7522     8.1932    53.0000   124.0000    71.0000 
    73. 

  73.  10 3011      9498     9497.8  wm-lh-lateraloccipital           103.5944    10.2443    67.0000   128.0000    61.0000 
    74. 

  74.  11 3012      5637     5637.0  wm-lh-lateralorbitofrontal        98.2637    11.1671    62.0000   123.0000    61.0000 
    75. 

  75.  12 3013      5364     5363.6  wm-lh-lingual                     96.2957    10.4728    36.0000   125.0000    89.0000 
    76. 

  76.  13 3014      3427     3426.9  wm-lh-medialorbitofrontal         93.7810    11.3665    36.0000   120.0000    84.0000 
    77. 

  77.  14 3015      5376     5376.2  wm-lh-middletemporal              94.6953    11.4977    64.0000   121.0000    57.0000 
    78. 

  78.  15 3016      1902     1901.8  wm-lh-parahippocampal             97.4329     9.5710    57.0000   122.0000    65.0000 
    79. 

  79.  16 3017      4035     4034.5  wm-lh-paracentral                 98.9718     9.1909    69.0000   124.0000    55.0000 
    80. 

  80.  17 3018      3656     3656.0  wm-lh-parsopercularis             99.0308     8.9882    66.0000   116.0000    50.0000 
    81. 

  81.  18 3019       872      872.0  wm-lh-parsorbitalis              102.2854    11.7048    73.0000   124.0000    51.0000 
    82. 

  82.  19 3020      3848     3848.1  wm-lh-parstriangularis           102.7938     9.0411    71.0000   123.0000    52.0000 
    83. 

  83.  20 3021      3193     3193.1  wm-lh-pericalcarine               98.6454    12.0433     6.0000   124.0000   118.0000 
    84. 

  84.  21 3022      7832     7831.7  wm-lh-postcentral                 98.1726     9.8285    61.0000   126.0000    65.0000 
    85. 

  85.  22 3023      5034     5033.8  wm-lh-posteriorcingulate         102.5176     9.5572    37.0000   121.0000    84.0000 
    86. 

  86.  23 3024     14439    14439.5  wm-lh-precentral                  99.3438     8.8060    66.0000   121.0000    55.0000 
    87. 

  87.  24 3025      9725     9725.4  wm-lh-precuneus                  106.4119     9.8196    60.0000   127.0000    67.0000 
    88. 

  88.  25 3026      3039     3039.4  wm-lh-rostralanteriorcingulate    99.2274    10.9341    50.0000   119.0000    69.0000 
    89. 

  89.  26 3027     14415    14414.9  wm-lh-rostralmiddlefrontal       100.7360     9.9467    61.0000   125.0000    64.0000 
    90. 

  90.  27 3028     18121    18121.5  wm-lh-superiorfrontal             95.7254     9.7005    52.0000   116.0000    64.0000 
    91. 

  91.  28 3029     11634    11634.0  wm-lh-superiorparietal           107.3699     9.6948    69.0000   128.0000    59.0000 
    92. 

  92.  29 3030      8277     8276.9  wm-lh-superiortemporal           101.5024    10.9745    64.0000   126.0000    62.0000 
    93. 

  93.  30 3031      8589     8588.7  wm-lh-supramarginal              104.5116    10.9267    59.0000   128.0000    69.0000 
    94. 

  94.  31 3032       223      223.0  wm-lh-frontalpole                 86.4480     7.7660    67.0000   105.0000    38.0000 
    95. 

  95.  32 3033       643      642.8  wm-lh-temporalpole                86.4742     9.9199    63.0000   111.0000    48.0000 
    96. 

  96.  33 3034       587      587.0  wm-lh-transversetemporal          99.4240     7.9331    74.0000   120.0000    46.0000 
    97. 

  97.  34 3035      8762     8762.0  wm-lh-insula                      96.8247    11.9430    47.0000   122.0000    75.0000 
    98. 

  98.  35 4001      3206     3205.6  wm-rh-bankssts                   102.7554     8.4971    72.0000   119.0000    47.0000 
    99. 

  99.  36 4002      3105     3105.2  wm-rh-caudalanteriorcingulate    100.1397     9.5244    43.0000   118.0000    75.0000 
    100. 

  100.  37 4003      7630     7629.6  wm-rh-caudalmiddlefrontal         97.0893     9.0918    66.0000   116.0000    50.0000 
    101. 

  101.  38 4005      2367     2366.6  wm-rh-cuneus                     103.2271    10.5014    67.0000   124.0000    57.0000 
    102. 

  102.  39 4006       592      592.2  wm-rh-entorhinal                  87.6933     8.5175    64.0000   106.0000    42.0000 
    103. 

  103.  40 4007      6669     6669.1  wm-rh-fusiform                    96.3953    10.4430    64.0000   123.0000    59.0000 
    104. 

  104.  41 4008     11683    11682.8  wm-rh-inferiorparietal           106.6733     9.7349    70.0000   130.0000    60.0000 
    105. 

  105.  42 4009      6868     6867.6  wm-rh-inferiortemporal            95.7134    11.1635    62.0000   119.0000    57.0000 
    106. 

  106.  43 4010      3192     3191.6  wm-rh-isthmuscingulate           104.5211     7.9174    71.0000   121.0000    50.0000 
    107. 

  107.  44 4011      9531     9530.7  wm-rh-lateraloccipital           102.9334     9.9600    65.0000   129.0000    64.0000 
    108. 

  108.  45 4012      5943     5942.6  wm-rh-lateralorbitofrontal       101.8315    11.7535    52.0000   127.0000    75.0000 
    109. 

  109.  46 4013      5158     5157.8  wm-rh-lingual                     95.1627    10.4027    40.0000   121.0000    81.0000 
    110. 

  110.  47 4014      3814     3813.7  wm-rh-medialorbitofrontal         96.1863    12.3519    40.0000   121.0000    81.0000 
    111. 

  111.  48 4015      6116     6115.7  wm-rh-middletemporal              94.8083    10.6591    62.0000   119.0000    57.0000 
    112. 

  112.  49 4016      1945     1945.0  wm-rh-parahippocampal             94.1438     9.4843    37.0000   115.0000    78.0000 
    113. 

  113.  50 4017      4553     4553.3  wm-rh-paracentral                 98.9169     9.4504    67.0000   122.0000    55.0000 
    114. 

  114.  51 4018      3524     3524.0  wm-rh-parsopercularis             99.4702     8.7407    68.0000   119.0000    51.0000 
    115. 

  115.  52 4019       712      712.1  wm-rh-parsorbitalis              101.2867    11.0997    71.0000   125.0000    54.0000 
    116. 

  116.  53 4020      3290     3290.5  wm-rh-parstriangularis           105.8819     9.2924    72.0000   125.0000    53.0000 
    117. 

  117.  54 4021      3241     3241.1  wm-rh-pericalcarine               97.2737    14.7594     0.0000   127.0000   127.0000 
    118. 

  118.  55 4022      8677     8677.1  wm-rh-postcentral                 98.6439     9.4578    68.0000   124.0000    56.0000 
    119. 

  119.  56 4023      4653     4652.9  wm-rh-posteriorcingulate         101.8494     9.6449    37.0000   123.0000    86.0000 
    120. 

  120.  57 4024     15032    15032.0  wm-rh-precentral                  98.6989     8.5669    63.0000   123.0000    60.0000 
    121. 

  121.  58 4025      9877     9877.5  wm-rh-precuneus                  105.1161     9.4277    66.0000   125.0000    59.0000 
    122. 

  122.  59 4026      2012     2011.6  wm-rh-rostralanteriorcingulate    99.9612    12.0567    35.0000   124.0000    89.0000 
    123. 

  123.  60 4027     13229    13228.7  wm-rh-rostralmiddlefrontal       100.5394    11.0244    58.0000   126.0000    68.0000 
    124. 

  124.  61 4028     18869    18868.9  wm-rh-superiorfrontal             97.6511     9.5770    50.0000   121.0000    71.0000 
    125. 

  125.  62 4029     10685    10685.1  wm-rh-superiorparietal           105.7688     9.8300    71.0000   125.0000    54.0000 
    126. 

  126.  63 4030      6893     6893.5  wm-rh-superiortemporal            97.0943     9.8653    64.0000   122.0000    58.0000 
    127. 

  127.  64 4031     11453    11453.3  wm-rh-supramarginal              104.4204     9.8791    65.0000   125.0000    60.0000 
    128. 

  128.  65 4032       326      325.6  wm-rh-frontalpole                 89.7409     9.7934    70.0000   113.0000    43.0000 
    129. 

  129.  66 4033       558      557.8  wm-rh-temporalpole                87.5672    10.0229    65.0000   125.0000    60.0000 
    130. 

  130.  67 4034       462      462.4  wm-rh-transversetemporal          97.5090     7.4928    77.0000   116.0000    39.0000 
    131. 

  131.  68 4035      9008     9007.6  wm-rh-insula                      94.6743    11.7845    53.0000   119.0000    66.0000 
    132. 

  132.  69 5001     25869    25869.1  Left-UnsegmentedWhiteMatter      103.9871    11.1360    10.0000   128.0000   118.0000 
    133. 

  133.  70 5002     28025    28025.5  Right-UnsegmentedWhiteMatter     102.7455    11.1123    11.0000   128.0000   117.0000 
    134.