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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub015
- # sysname Linux
- # hostname snake5
- # machine x86_64
- # user fkaule
- # anatomy_type volume
- #
- # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- # subjectname sub015
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1216267.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1198040.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1201567.217142, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 276644.258229, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 273922.392840, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 550566.651069, mm^3
- # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 230316.100932, mm^3
- # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 230867.465141, mm^3
- # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 461183.566072, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 62517.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 712515.651069, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1089492.217142, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1075298.217142, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1070626.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1759532.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.974539, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.409832, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 12, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 21, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 33, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1248043.386577, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2013/08/08 17:53:41
- # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2013/05/13 23:21:15
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2013/08/08 12:15:44
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2013/08/08 12:15:44
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 5675 5674.9 Left-Lateral-Ventricle 17.0013 13.8689 0.0000 89.0000 89.0000
- 2 5 313 312.8 Left-Inf-Lat-Vent 35.2895 15.6170 5.0000 80.0000 75.0000
- 3 7 14407 14407.0 Left-Cerebellum-White-Matter 86.5160 7.0366 29.0000 122.0000 93.0000
- 4 8 49801 49800.6 Left-Cerebellum-Cortex 57.1859 10.4061 4.0000 111.0000 107.0000
- 5 10 8387 8387.1 Left-Thalamus-Proper 84.4468 10.7190 32.0000 110.0000 78.0000
- 6 11 3647 3646.7 Left-Caudate 66.8259 9.3278 33.0000 103.0000 70.0000
- 7 12 5773 5773.3 Left-Putamen 72.7656 8.8117 36.0000 103.0000 67.0000
- 8 13 2257 2256.5 Left-Pallidum 85.7750 7.4825 49.0000 106.0000 57.0000
- 9 14 803 802.9 3rd-Ventricle 29.1872 16.5315 0.0000 82.0000 82.0000
- 10 15 2413 2412.6 4th-Ventricle 15.8729 10.7505 0.0000 81.0000 81.0000
- 11 16 22792 22791.6 Brain-Stem 81.0726 9.5517 0.0000 116.0000 116.0000
- 12 17 3586 3585.6 Left-Hippocampus 63.3852 9.3487 20.0000 105.0000 85.0000
- 13 18 1428 1428.0 Left-Amygdala 59.1558 7.8369 39.0000 82.0000 43.0000
- 14 24 1022 1021.7 CSF 33.8200 17.6372 1.0000 92.0000 91.0000
- 15 26 752 751.7 Left-Accumbens-area 59.1853 8.5244 39.0000 93.0000 54.0000
- 16 28 3960 3959.9 Left-VentralDC 89.2021 11.1709 30.0000 113.0000 83.0000
- 17 30 31 31.4 Left-vessel 52.3226 16.4527 7.0000 76.0000 69.0000
- 18 31 1263 1262.5 Left-choroid-plexus 46.5257 16.4079 10.0000 101.0000 91.0000
- 19 43 5159 5158.9 Right-Lateral-Ventricle 17.2907 13.5911 0.0000 101.0000 101.0000
- 20 44 228 227.8 Right-Inf-Lat-Vent 27.2322 12.5773 3.0000 61.0000 58.0000
- 21 46 14792 14792.3 Right-Cerebellum-White-Matter 86.2840 6.9425 33.0000 119.0000 86.0000
- 22 47 50854 50853.8 Right-Cerebellum-Cortex 58.0261 10.3237 5.0000 100.0000 95.0000
- 23 49 8019 8018.8 Right-Thalamus-Proper 80.0099 11.3267 32.0000 109.0000 77.0000
- 24 50 3904 3903.5 Right-Caudate 65.4635 10.1282 29.0000 99.0000 70.0000
- 25 51 6210 6210.0 Right-Putamen 74.7883 8.0308 25.0000 102.0000 77.0000
- 26 52 2125 2125.0 Right-Pallidum 89.4399 6.2737 61.0000 113.0000 52.0000
- 27 53 3943 3943.4 Right-Hippocampus 60.4771 10.0529 15.0000 101.0000 86.0000
- 28 54 1815 1815.0 Right-Amygdala 60.0400 7.5896 37.0000 86.0000 49.0000
- 29 58 662 662.4 Right-Accumbens-area 63.4404 8.7176 43.0000 93.0000 50.0000
- 30 60 3969 3969.3 Right-VentralDC 86.1494 12.5693 10.0000 113.0000 103.0000
- 31 62 94 94.4 Right-vessel 57.6915 19.0974 15.0000 95.0000 80.0000
- 32 63 1637 1637.0 Right-choroid-plexus 50.0558 16.9273 9.0000 106.0000 97.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1560 1560.0 WM-hypointensities 79.1792 13.6694 13.0000 112.0000 99.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 7 7.0 non-WM-hypointensities 74.7778 15.8412 45.0000 92.0000 47.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 236 235.7 Optic-Chiasm 71.0261 19.2065 13.0000 105.0000 92.0000
- 41 251 837 837.2 CC_Posterior 106.6801 6.9230 79.0000 124.0000 45.0000
- 42 252 445 445.4 CC_Mid_Posterior 101.3739 11.2045 34.0000 121.0000 87.0000
- 43 253 469 469.1 CC_Central 100.4487 7.8128 63.0000 120.0000 57.0000
- 44 254 401 401.4 CC_Mid_Anterior 100.7986 6.9930 62.0000 114.0000 52.0000
- 45 255 876 875.6 CC_Anterior 103.1090 8.1166 51.0000 130.0000 79.0000
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