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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub013 --surf-wm-vol --ctab /opt/freesurfer/5.3.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake4
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub013
    14. 

  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 184426.962527, mm^3
    15. 

  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 187146.071411, mm^3
    16. 

  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 371573.033939, mm^3
    17. 

  17. # Measure Mask, MaskVol, Mask Volume, 1454550.000000, mm^3
    18. 

  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 993260.928306, mm^3
    19. 

  19. # SegVolFile mri/wmparc.mgz 
    20. 

  20. # SegVolFileTimeStamp  2013/08/08 22:51:49 
    21. 

  21. # ColorTable /opt/freesurfer/5.3.0/WMParcStatsLUT.txt 
    22. 

  22. # ColorTableTimeStamp 2013/05/13 23:21:15 
    23. 

  23. # InVolFile  mri/norm.mgz 
    24. 

  24. # InVolFileTimeStamp  2013/08/08 12:16:17 
    25. 

  25. # InVolFrame 0 
    26. 

  26. # PVVolFile  mri/norm.mgz 
    27. 

  27. # PVVolFileTimeStamp  2013/08/08 12:16:17 
    28. 

  28. # ExcludeSegId 0 
    29. 

  29. # Only reporting non-empty segmentations
    30. 

  30. # VoxelVolume_mm3 1 
    31. 

  31. # TableCol  1 ColHeader Index 
    32. 

  32. # TableCol  1 FieldName Index 
    33. 

  33. # TableCol  1 Units     NA 
    34. 

  34. # TableCol  2 ColHeader SegId 
    35. 

  35. # TableCol  2 FieldName Segmentation Id
    36. 

  36. # TableCol  2 Units     NA
    37. 

  37. # TableCol  3 ColHeader NVoxels 
    38. 

  38. # TableCol  3 FieldName Number of Voxels
    39. 

  39. # TableCol  3 Units     unitless
    40. 

  40. # TableCol  4 ColHeader Volume_mm3
    41. 

  41. # TableCol  4 FieldName Volume
    42. 

  42. # TableCol  4 Units     mm^3
    43. 

  43. # TableCol  5 ColHeader StructName
    44. 

  44. # TableCol  5 FieldName Structure Name
    45. 

  45. # TableCol  5 Units     NA
    46. 

  46. # TableCol  6 ColHeader normMean 
    47. 

  47. # TableCol  6 FieldName Intensity normMean
    48. 

  48. # TableCol  6 Units     MR
    49. 

  49. # TableCol  7 ColHeader normStdDev
    50. 

  50. # TableCol  7 FieldName Itensity normStdDev
    51. 

  51. # TableCol  7 Units     MR
    52. 

  52. # TableCol  8 ColHeader normMin
    53. 

  53. # TableCol  8 FieldName Intensity normMin
    54. 

  54. # TableCol  8 Units     MR
    55. 

  55. # TableCol  9 ColHeader normMax
    56. 

  56. # TableCol  9 FieldName Intensity normMax
    57. 

  57. # TableCol  9 Units     MR
    58. 

  58. # TableCol 10 ColHeader normRange
    59. 

  59. # TableCol 10 FieldName Intensity normRange
    60. 

  60. # TableCol 10 Units     MR
    61. 

  61. # NRows 70 
    62. 

  62. # NTableCols 10 
    63. 

  63. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    64. 

  64.   1 3001      2641     2640.7  wm-lh-bankssts                   105.9078     8.4292    73.0000   122.0000    49.0000 
    65. 

  65.   2 3002      2529     2529.1  wm-lh-caudalanteriorcingulate    100.6147     9.2457    49.0000   116.0000    67.0000 
    66. 

  66.   3 3003      6525     6524.9  wm-lh-caudalmiddlefrontal         99.0493     9.1729    66.0000   114.0000    48.0000 
    67. 

  67.   4 3005      2199     2198.5  wm-lh-cuneus                     102.7423    10.0973    72.0000   123.0000    51.0000 
    68. 

  68.   5 3006       878      877.8  wm-lh-entorhinal                  85.5669     9.4303    44.0000   109.0000    65.0000 
    69. 

  69.   6 3007      6700     6699.6  wm-lh-fusiform                    99.9096    10.3311    31.0000   122.0000    91.0000 
    70. 

  70.   7 3008      8891     8890.8  wm-lh-inferiorparietal           104.6532    10.4762    70.0000   124.0000    54.0000 
    71. 

  71.   8 3009      5794     5794.1  wm-lh-inferiortemporal            98.5062    11.1250    64.0000   123.0000    59.0000 
    72. 

  72.   9 3010      3113     3112.6  wm-lh-isthmuscingulate           103.5566     7.9218    39.0000   121.0000    82.0000 
    73. 

  73.  10 3011      6697     6696.7  wm-lh-lateraloccipital            99.7697    10.7567    64.0000   120.0000    56.0000 
    74. 

  74.  11 3012      5292     5291.7  wm-lh-lateralorbitofrontal        97.3119    11.2784    53.0000   120.0000    67.0000 
    75. 

  75.  12 3013      4571     4570.6  wm-lh-lingual                     96.5363    10.2571    27.0000   121.0000    94.0000 
    76. 

  76.  13 3014      2860     2860.1  wm-lh-medialorbitofrontal         90.9089    13.5771    23.0000   114.0000    91.0000 
    77. 

  77.  14 3015      4338     4338.1  wm-lh-middletemporal              97.1265    10.7147    65.0000   117.0000    52.0000 
    78. 

  78.  15 3016      1562     1562.3  wm-lh-parahippocampal             92.8105     8.0643    69.0000   113.0000    44.0000 
    79. 

  79.  16 3017      2978     2977.7  wm-lh-paracentral                100.2200     8.5907    70.0000   120.0000    50.0000 
    80. 

  80.  17 3018      3431     3430.9  wm-lh-parsopercularis             98.6169     8.4425    69.0000   113.0000    44.0000 
    81. 

  81.  18 3019       786      786.1  wm-lh-parsorbitalis               98.0669     9.5976    74.0000   121.0000    47.0000 
    82. 

  82.  19 3020      2462     2461.9  wm-lh-parstriangularis           101.8705     8.5680    74.0000   121.0000    47.0000 
    83. 

  83.  20 3021      2192     2192.0  wm-lh-pericalcarine               97.4673    16.5627     2.0000   124.0000   122.0000 
    84. 

  84.  21 3022      5852     5851.9  wm-lh-postcentral                 97.9681    10.0245    69.0000   118.0000    49.0000 
    85. 

  85.  22 3023      4104     4104.1  wm-lh-posteriorcingulate         102.6920    10.0173    39.0000   119.0000    80.0000 
    86. 

  86.  23 3024     11489    11489.2  wm-lh-precentral                  99.4209     8.4911    71.0000   118.0000    47.0000 
    87. 

  87.  24 3025      7776     7776.3  wm-lh-precuneus                  103.4581     9.8042    67.0000   123.0000    56.0000 
    88. 

  88.  25 3026      2274     2274.2  wm-lh-rostralanteriorcingulate    99.5085    10.4633    55.0000   117.0000    62.0000 
    89. 

  89.  26 3027     10706    10705.6  wm-lh-rostralmiddlefrontal        99.1495    10.7247    62.0000   121.0000    59.0000 
    90. 

  90.  27 3028     15561    15561.5  wm-lh-superiorfrontal             95.7350    10.4635    58.0000   116.0000    58.0000 
    91. 

  91.  28 3029     10437    10436.7  wm-lh-superiorparietal           102.8990    10.4640    63.0000   125.0000    62.0000 
    92. 

  92.  29 3030      6528     6527.6  wm-lh-superiortemporal            99.7064     9.4944    70.0000   122.0000    52.0000 
    93. 

  93.  30 3031      7326     7326.5  wm-lh-supramarginal              102.9767    10.8494    69.0000   123.0000    54.0000 
    94. 

  94.  31 3032       173      172.6  wm-lh-frontalpole                 83.2712     8.6887    61.0000   103.0000    42.0000 
    95. 

  95.  32 3033       568      568.3  wm-lh-temporalpole                84.9073     9.2882    62.0000   106.0000    44.0000 
    96. 

  96.  33 3034       674      673.6  wm-lh-transversetemporal         101.6890     7.9567    76.0000   117.0000    41.0000 
    97. 

  97.  34 3035      7410     7409.5  wm-lh-insula                      97.1105    11.4850    53.0000   119.0000    66.0000 
    98. 

  98.  35 4001      2578     2578.3  wm-rh-bankssts                   104.6142     7.9820    74.0000   121.0000    47.0000 
    99. 

  99.  36 4002      2178     2178.4  wm-rh-caudalanteriorcingulate    100.0907    10.2697    44.0000   120.0000    76.0000 
    100. 

  100.  37 4003      4464     4463.7  wm-rh-caudalmiddlefrontal         98.0507    10.1764    64.0000   118.0000    54.0000 
    101. 

  101.  38 4005      2379     2379.5  wm-rh-cuneus                     104.3001    10.0260    75.0000   122.0000    47.0000 
    102. 

  102.  39 4006       703      703.1  wm-rh-entorhinal                  83.8443     8.9518    55.0000   110.0000    55.0000 
    103. 

  103.  40 4007      5967     5967.0  wm-rh-fusiform                    97.2217    10.2370    52.0000   119.0000    67.0000 
    104. 

  104.  41 4008     11588    11588.2  wm-rh-inferiorparietal           105.0031     9.8504    68.0000   126.0000    58.0000 
    105. 

  105.  42 4009      5144     5144.0  wm-rh-inferiortemporal            93.5007    11.0096    55.0000   118.0000    63.0000 
    106. 

  106.  43 4010      2922     2922.3  wm-rh-isthmuscingulate           104.9948     7.8848    60.0000   122.0000    62.0000 
    107. 

  107.  44 4011      6816     6816.4  wm-rh-lateraloccipital           103.1325     9.2586    74.0000   124.0000    50.0000 
    108. 

  108.  45 4012      5774     5774.1  wm-rh-lateralorbitofrontal       102.0636    11.9897    22.0000   125.0000   103.0000 
    109. 

  109.  46 4013      4878     4878.1  wm-rh-lingual                     99.0492    10.1020    34.0000   125.0000    91.0000 
    110. 

  110.  47 4014      2831     2831.5  wm-rh-medialorbitofrontal         97.7153    12.2139    30.0000   122.0000    92.0000 
    111. 

  111.  48 4015      5330     5330.2  wm-rh-middletemporal              96.2185    10.1876    64.0000   121.0000    57.0000 
    112. 

  112.  49 4016      1388     1387.9  wm-rh-parahippocampal             92.6357     8.4383    67.0000   111.0000    44.0000 
    113. 

  113.  50 4017      4467     4467.4  wm-rh-paracentral                101.5615     9.3129    72.0000   122.0000    50.0000 
    114. 

  114.  51 4018      2124     2124.3  wm-rh-parsopercularis             99.6581     8.7865    71.0000   117.0000    46.0000 
    115. 

  115.  52 4019      1046     1046.1  wm-rh-parsorbitalis               99.5506    10.0835    73.0000   121.0000    48.0000 
    116. 

  116.  53 4020      2839     2839.4  wm-rh-parstriangularis           102.9363     9.0841    75.0000   121.0000    46.0000 
    117. 

  117.  54 4021      2187     2187.0  wm-rh-pericalcarine              100.8918     9.7578    66.0000   122.0000    56.0000 
    118. 

  118.  55 4022      6622     6621.9  wm-rh-postcentral                 98.4405     9.8745    68.0000   118.0000    50.0000 
    119. 

  119.  56 4023      3940     3939.7  wm-rh-posteriorcingulate         103.1035     9.1502    33.0000   120.0000    87.0000 
    120. 

  120.  57 4024     12930    12929.9  wm-rh-precentral                  99.4880     8.5927    68.0000   118.0000    50.0000 
    121. 

  121.  58 4025      8352     8352.5  wm-rh-precuneus                  104.8169     9.5102    66.0000   124.0000    58.0000 
    122. 

  122.  59 4026      1975     1975.3  wm-rh-rostralanteriorcingulate    98.7610    14.2662    20.0000   121.0000   101.0000 
    123. 

  123.  60 4027     11482    11482.1  wm-rh-rostralmiddlefrontal        99.0400    11.3749    59.0000   124.0000    65.0000 
    124. 

  124.  61 4028     15958    15958.3  wm-rh-superiorfrontal             95.2856    10.7966    61.0000   116.0000    55.0000 
    125. 

  125.  62 4029      9145     9144.6  wm-rh-superiorparietal           103.2239    10.4029    69.0000   122.0000    53.0000 
    126. 

  126.  63 4030      4893     4893.1  wm-rh-superiortemporal            97.0873     9.2555    65.0000   120.0000    55.0000 
    127. 

  127.  64 4031      6335     6334.6  wm-rh-supramarginal              104.8298    10.1046    68.0000   123.0000    55.0000 
    128. 

  128.  65 4032       194      194.4  wm-rh-frontalpole                 88.2079    10.2382    66.0000   108.0000    42.0000 
    129. 

  129.  66 4033       418      418.0  wm-rh-temporalpole                83.0649     8.2889    61.0000   106.0000    45.0000 
    130. 

  130.  67 4034       561      561.3  wm-rh-transversetemporal         100.6925     7.5776    79.0000   117.0000    38.0000 
    131. 

  131.  68 4035      7199     7199.4  wm-rh-insula                      96.0008    11.7406    52.0000   119.0000    67.0000 
    132. 

  132.  69 5001     19495    19494.7  Left-UnsegmentedWhiteMatter      102.8374    10.8975    15.0000   124.0000   109.0000 
    133. 

  133.  70 5002     21819    21819.0  Right-UnsegmentedWhiteMatter     103.6509    10.3963    12.0000   124.0000   112.0000 
    134.