wmparc.stats 11 KB

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  1. # Title Segmentation Statistics
  2. #
  3. # generating_program mri_segstats
  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub013 --surf-wm-vol --ctab /opt/freesurfer/5.3.0/WMParcStatsLUT.txt --etiv
  6. # sysname Linux
  7. # hostname snake4
  8. # machine x86_64
  9. # user fkaule
  10. # anatomy_type volume
  11. #
  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
  13. # subjectname sub013
  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 184426.962527, mm^3
  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 187146.071411, mm^3
  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 371573.033939, mm^3
  17. # Measure Mask, MaskVol, Mask Volume, 1454550.000000, mm^3
  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 993260.928306, mm^3
  19. # SegVolFile mri/wmparc.mgz
  20. # SegVolFileTimeStamp 2013/08/08 22:51:49
  21. # ColorTable /opt/freesurfer/5.3.0/WMParcStatsLUT.txt
  22. # ColorTableTimeStamp 2013/05/13 23:21:15
  23. # InVolFile mri/norm.mgz
  24. # InVolFileTimeStamp 2013/08/08 12:16:17
  25. # InVolFrame 0
  26. # PVVolFile mri/norm.mgz
  27. # PVVolFileTimeStamp 2013/08/08 12:16:17
  28. # ExcludeSegId 0
  29. # Only reporting non-empty segmentations
  30. # VoxelVolume_mm3 1
  31. # TableCol 1 ColHeader Index
  32. # TableCol 1 FieldName Index
  33. # TableCol 1 Units NA
  34. # TableCol 2 ColHeader SegId
  35. # TableCol 2 FieldName Segmentation Id
  36. # TableCol 2 Units NA
  37. # TableCol 3 ColHeader NVoxels
  38. # TableCol 3 FieldName Number of Voxels
  39. # TableCol 3 Units unitless
  40. # TableCol 4 ColHeader Volume_mm3
  41. # TableCol 4 FieldName Volume
  42. # TableCol 4 Units mm^3
  43. # TableCol 5 ColHeader StructName
  44. # TableCol 5 FieldName Structure Name
  45. # TableCol 5 Units NA
  46. # TableCol 6 ColHeader normMean
  47. # TableCol 6 FieldName Intensity normMean
  48. # TableCol 6 Units MR
  49. # TableCol 7 ColHeader normStdDev
  50. # TableCol 7 FieldName Itensity normStdDev
  51. # TableCol 7 Units MR
  52. # TableCol 8 ColHeader normMin
  53. # TableCol 8 FieldName Intensity normMin
  54. # TableCol 8 Units MR
  55. # TableCol 9 ColHeader normMax
  56. # TableCol 9 FieldName Intensity normMax
  57. # TableCol 9 Units MR
  58. # TableCol 10 ColHeader normRange
  59. # TableCol 10 FieldName Intensity normRange
  60. # TableCol 10 Units MR
  61. # NRows 70
  62. # NTableCols 10
  63. # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
  64. 1 3001 2641 2640.7 wm-lh-bankssts 105.9078 8.4292 73.0000 122.0000 49.0000
  65. 2 3002 2529 2529.1 wm-lh-caudalanteriorcingulate 100.6147 9.2457 49.0000 116.0000 67.0000
  66. 3 3003 6525 6524.9 wm-lh-caudalmiddlefrontal 99.0493 9.1729 66.0000 114.0000 48.0000
  67. 4 3005 2199 2198.5 wm-lh-cuneus 102.7423 10.0973 72.0000 123.0000 51.0000
  68. 5 3006 878 877.8 wm-lh-entorhinal 85.5669 9.4303 44.0000 109.0000 65.0000
  69. 6 3007 6700 6699.6 wm-lh-fusiform 99.9096 10.3311 31.0000 122.0000 91.0000
  70. 7 3008 8891 8890.8 wm-lh-inferiorparietal 104.6532 10.4762 70.0000 124.0000 54.0000
  71. 8 3009 5794 5794.1 wm-lh-inferiortemporal 98.5062 11.1250 64.0000 123.0000 59.0000
  72. 9 3010 3113 3112.6 wm-lh-isthmuscingulate 103.5566 7.9218 39.0000 121.0000 82.0000
  73. 10 3011 6697 6696.7 wm-lh-lateraloccipital 99.7697 10.7567 64.0000 120.0000 56.0000
  74. 11 3012 5292 5291.7 wm-lh-lateralorbitofrontal 97.3119 11.2784 53.0000 120.0000 67.0000
  75. 12 3013 4571 4570.6 wm-lh-lingual 96.5363 10.2571 27.0000 121.0000 94.0000
  76. 13 3014 2860 2860.1 wm-lh-medialorbitofrontal 90.9089 13.5771 23.0000 114.0000 91.0000
  77. 14 3015 4338 4338.1 wm-lh-middletemporal 97.1265 10.7147 65.0000 117.0000 52.0000
  78. 15 3016 1562 1562.3 wm-lh-parahippocampal 92.8105 8.0643 69.0000 113.0000 44.0000
  79. 16 3017 2978 2977.7 wm-lh-paracentral 100.2200 8.5907 70.0000 120.0000 50.0000
  80. 17 3018 3431 3430.9 wm-lh-parsopercularis 98.6169 8.4425 69.0000 113.0000 44.0000
  81. 18 3019 786 786.1 wm-lh-parsorbitalis 98.0669 9.5976 74.0000 121.0000 47.0000
  82. 19 3020 2462 2461.9 wm-lh-parstriangularis 101.8705 8.5680 74.0000 121.0000 47.0000
  83. 20 3021 2192 2192.0 wm-lh-pericalcarine 97.4673 16.5627 2.0000 124.0000 122.0000
  84. 21 3022 5852 5851.9 wm-lh-postcentral 97.9681 10.0245 69.0000 118.0000 49.0000
  85. 22 3023 4104 4104.1 wm-lh-posteriorcingulate 102.6920 10.0173 39.0000 119.0000 80.0000
  86. 23 3024 11489 11489.2 wm-lh-precentral 99.4209 8.4911 71.0000 118.0000 47.0000
  87. 24 3025 7776 7776.3 wm-lh-precuneus 103.4581 9.8042 67.0000 123.0000 56.0000
  88. 25 3026 2274 2274.2 wm-lh-rostralanteriorcingulate 99.5085 10.4633 55.0000 117.0000 62.0000
  89. 26 3027 10706 10705.6 wm-lh-rostralmiddlefrontal 99.1495 10.7247 62.0000 121.0000 59.0000
  90. 27 3028 15561 15561.5 wm-lh-superiorfrontal 95.7350 10.4635 58.0000 116.0000 58.0000
  91. 28 3029 10437 10436.7 wm-lh-superiorparietal 102.8990 10.4640 63.0000 125.0000 62.0000
  92. 29 3030 6528 6527.6 wm-lh-superiortemporal 99.7064 9.4944 70.0000 122.0000 52.0000
  93. 30 3031 7326 7326.5 wm-lh-supramarginal 102.9767 10.8494 69.0000 123.0000 54.0000
  94. 31 3032 173 172.6 wm-lh-frontalpole 83.2712 8.6887 61.0000 103.0000 42.0000
  95. 32 3033 568 568.3 wm-lh-temporalpole 84.9073 9.2882 62.0000 106.0000 44.0000
  96. 33 3034 674 673.6 wm-lh-transversetemporal 101.6890 7.9567 76.0000 117.0000 41.0000
  97. 34 3035 7410 7409.5 wm-lh-insula 97.1105 11.4850 53.0000 119.0000 66.0000
  98. 35 4001 2578 2578.3 wm-rh-bankssts 104.6142 7.9820 74.0000 121.0000 47.0000
  99. 36 4002 2178 2178.4 wm-rh-caudalanteriorcingulate 100.0907 10.2697 44.0000 120.0000 76.0000
  100. 37 4003 4464 4463.7 wm-rh-caudalmiddlefrontal 98.0507 10.1764 64.0000 118.0000 54.0000
  101. 38 4005 2379 2379.5 wm-rh-cuneus 104.3001 10.0260 75.0000 122.0000 47.0000
  102. 39 4006 703 703.1 wm-rh-entorhinal 83.8443 8.9518 55.0000 110.0000 55.0000
  103. 40 4007 5967 5967.0 wm-rh-fusiform 97.2217 10.2370 52.0000 119.0000 67.0000
  104. 41 4008 11588 11588.2 wm-rh-inferiorparietal 105.0031 9.8504 68.0000 126.0000 58.0000
  105. 42 4009 5144 5144.0 wm-rh-inferiortemporal 93.5007 11.0096 55.0000 118.0000 63.0000
  106. 43 4010 2922 2922.3 wm-rh-isthmuscingulate 104.9948 7.8848 60.0000 122.0000 62.0000
  107. 44 4011 6816 6816.4 wm-rh-lateraloccipital 103.1325 9.2586 74.0000 124.0000 50.0000
  108. 45 4012 5774 5774.1 wm-rh-lateralorbitofrontal 102.0636 11.9897 22.0000 125.0000 103.0000
  109. 46 4013 4878 4878.1 wm-rh-lingual 99.0492 10.1020 34.0000 125.0000 91.0000
  110. 47 4014 2831 2831.5 wm-rh-medialorbitofrontal 97.7153 12.2139 30.0000 122.0000 92.0000
  111. 48 4015 5330 5330.2 wm-rh-middletemporal 96.2185 10.1876 64.0000 121.0000 57.0000
  112. 49 4016 1388 1387.9 wm-rh-parahippocampal 92.6357 8.4383 67.0000 111.0000 44.0000
  113. 50 4017 4467 4467.4 wm-rh-paracentral 101.5615 9.3129 72.0000 122.0000 50.0000
  114. 51 4018 2124 2124.3 wm-rh-parsopercularis 99.6581 8.7865 71.0000 117.0000 46.0000
  115. 52 4019 1046 1046.1 wm-rh-parsorbitalis 99.5506 10.0835 73.0000 121.0000 48.0000
  116. 53 4020 2839 2839.4 wm-rh-parstriangularis 102.9363 9.0841 75.0000 121.0000 46.0000
  117. 54 4021 2187 2187.0 wm-rh-pericalcarine 100.8918 9.7578 66.0000 122.0000 56.0000
  118. 55 4022 6622 6621.9 wm-rh-postcentral 98.4405 9.8745 68.0000 118.0000 50.0000
  119. 56 4023 3940 3939.7 wm-rh-posteriorcingulate 103.1035 9.1502 33.0000 120.0000 87.0000
  120. 57 4024 12930 12929.9 wm-rh-precentral 99.4880 8.5927 68.0000 118.0000 50.0000
  121. 58 4025 8352 8352.5 wm-rh-precuneus 104.8169 9.5102 66.0000 124.0000 58.0000
  122. 59 4026 1975 1975.3 wm-rh-rostralanteriorcingulate 98.7610 14.2662 20.0000 121.0000 101.0000
  123. 60 4027 11482 11482.1 wm-rh-rostralmiddlefrontal 99.0400 11.3749 59.0000 124.0000 65.0000
  124. 61 4028 15958 15958.3 wm-rh-superiorfrontal 95.2856 10.7966 61.0000 116.0000 55.0000
  125. 62 4029 9145 9144.6 wm-rh-superiorparietal 103.2239 10.4029 69.0000 122.0000 53.0000
  126. 63 4030 4893 4893.1 wm-rh-superiortemporal 97.0873 9.2555 65.0000 120.0000 55.0000
  127. 64 4031 6335 6334.6 wm-rh-supramarginal 104.8298 10.1046 68.0000 123.0000 55.0000
  128. 65 4032 194 194.4 wm-rh-frontalpole 88.2079 10.2382 66.0000 108.0000 42.0000
  129. 66 4033 418 418.0 wm-rh-temporalpole 83.0649 8.2889 61.0000 106.0000 45.0000
  130. 67 4034 561 561.3 wm-rh-transversetemporal 100.6925 7.5776 79.0000 117.0000 38.0000
  131. 68 4035 7199 7199.4 wm-rh-insula 96.0008 11.7406 52.0000 119.0000 67.0000
  132. 69 5001 19495 19494.7 Left-UnsegmentedWhiteMatter 102.8374 10.8975 15.0000 124.0000 109.0000
  133. 70 5002 21819 21819.0 Right-UnsegmentedWhiteMatter 103.6509 10.3963 12.0000 124.0000 112.0000