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cortical-surfaces-freesurfer
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recon-all.env

recon-all.env 3.5 KB
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  1. Thu Aug  8 10:53:42 CEST 2013
    2. 

  2. FREESURFER_HOME /opt/freesurfer/5.3.0
    3. 

  3. Actual FREESURFER_HOME /opt/freesurfer/5.3.0
    4. 

  4. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013
    5. 

  5. setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    6. 

  6. -i /home/data/exppsy/forrest_gump/openfmri.org/sub013/anatomy/highres001.nii.gz -cw256 -all -T2 /home/data/exppsy/forrest_gump/openfmri.org/sub013/anatomy/other/t2w001.nii.gz -T2pial -subjid sub013 -sd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    7. 

  7. Linux snake4 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
    8. 

  8. 

  9. cputime      unlimited
    10. 

  10. filesize     unlimited
    11. 

  11. datasize     unlimited
    12. 

  12. stacksize    unlimited
    13. 

  13. coredumpsize 0 kbytes
    14. 

  14. memoryuse    unlimited
    15. 

  15. vmemoryuse   unlimited
    16. 

  16. descriptors  1024 
    17. 

  17. memorylocked 64 kbytes
    18. 

  18. maxproc      unlimited
    19. 

  19. maxlocks     unlimited
    20. 

  20. maxsignal    16382 
    21. 

  21. maxmessage   819200 
    22. 

  22. maxnice      0 
    23. 

  23. maxrtprio    0 
    24. 

  24. maxrttime    unlimited
    25. 

  25. 

  26. POSSUMDIR=/usr/share/fsl/5.0
    27. 

  27. LANGUAGE=en_US:en
    28. 

  28. USER=fkaule
    29. 

  29. SSH_CLIENT=141.44.98.28 55777 22
    30. 

  30. MAIL=/var/mail/fkaule
    31. 

  31. MSM_PRODUCT=MSM
    32. 

  32. LD_LIBRARY_PATH=/usr/lib/fsl/5.0
    33. 

  33. SHLVL=2
    34. 

  34. OLDPWD=/home
    35. 

  35. CONDOR_ID=40988.0
    36. 

  36. _CONDOR_MACHINE_AD=/var/lib/condor/execute/dir_13566/.machine.ad
    37. 

  37. _CONDOR_ANCESTOR_13566=13568:1375952021:539792896
    38. 

  38. HOME=/home/fkaule
    39. 

  39. SSH_TTY=/dev/pts/10
    40. 

  40. XDG_SESSION_COOKIE=fce1b605eb98d6b0f3e0b7ad000005bf-1375944552.163769-1862872819
    41. 

  41. MINC_LIB_DIR=/opt/freesurfer/5.3.0/mni/lib
    42. 

  42. FREESURFER_HOME=/opt/freesurfer/5.3.0
    43. 

  43. MINC_BIN_DIR=/opt/freesurfer/5.3.0/mni/bin
    44. 

  44. _CONDOR_JOB_PIDS=
    45. 

  45. FSLDIR=/usr/share/fsl/5.0
    46. 

  46. CONDOR_PARENT_ID=medusa:19365:1375951932
    47. 

  47. FUNCTIONALS_DIR=/opt/freesurfer/5.3.0/sessions
    48. 

  48. TMPDIR=/var/lib/condor/execute/dir_13566
    49. 

  49. _CONDOR_JOB_IWD=/home/data/exppsy/forrest_gump
    50. 

  50. LOGNAME=fkaule
    51. 

  51. FSLMULTIFILEQUIT=TRUE
    52. 

  52. FSLTCLSH=/usr/bin/tclsh
    53. 

  53. TEMP=/var/lib/condor/execute/dir_13566
    54. 

  54. _=/usr/bin/ipython
    55. 

  55. FSFAST_HOME=/opt/freesurfer/5.3.0/fsfast
    56. 

  56. TERM=xterm
    57. 

  57. FSLMACHINELIST=
    58. 

  58. _JAVA_OPTIONS=-Xmx256m
    59. 

  59. PATH=/opt/freesurfer/5.3.0/bin:/opt/freesurfer/5.3.0/fsfast/bin:/opt/freesurfer/5.3.0/tktools:/opt/freesurfer/5.3.0/mni/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/usr/lib/fsl/5.0
    60. 

  60. OS=Linux
    61. 

  61. _CONDOR_DAGMAN_LOG=/home/data/exppsy/forrest_gump/pipe_tmp/metaflow_fs/batch/workflow-f6ef0e4c-d7a4-4a37-a0a9-c223ed5b1f93.dag.dagman.out
    62. 

  62. PERL5LIB=/opt/freesurfer/5.3.0/mni/lib/perl5/5.8.5
    63. 

  63. FSLOUTPUTTYPE=NIFTI_GZ
    64. 

  64. DISPLAY=:1
    65. 

  65. MNI_DIR=/opt/freesurfer/5.3.0/mni
    66. 

  66. MNI_PERL5LIB=/opt/freesurfer/5.3.0/mni/lib/perl5/5.8.5
    67. 

  67. LANG=C
    68. 

  68. LOCAL_DIR=/opt/freesurfer/5.3.0/local
    69. 

  69. FSLBROWSER=/etc/alternatives/x-www-browser
    70. 

  70. TMP=/var/lib/condor/execute/dir_13566
    71. 

  71. FS_OVERRIDE=0
    72. 

  72. SSH_AUTH_SOCK=/tmp/ssh-YmVJB30651/agent.30651
    73. 

  73. FSLWISH=/usr/bin/wish
    74. 

  74. FSLREMOTECALL=
    75. 

  75. _CONDOR_ANCESTOR_2640=13566:1375952021:1902678252
    76. 

  76. SHELL=/bin/bash
    77. 

  77. _CONDOR_ANCESTOR_7302=7421:1360325385:4217277112
    78. 

  78. _CONDOR_SLOT=slot1_2
    79. 

  79. MSM_HOME=/usr/local/MegaRAID Storage Manager
    80. 

  80. _CONDOR_ANCESTOR_7421=19365:1375951932:2149059971
    81. 

  81. FMRI_ANALYSIS_DIR=/opt/freesurfer/5.3.0/fsfast
    82. 

  82. FSF_OUTPUT_FORMAT=nii.gz
    83. 

  83. MNI_DATAPATH=/opt/freesurfer/5.3.0/mni/data
    84. 

  84. PWD=/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub013
    85. 

  85. SSH_CONNECTION=141.44.98.28 55777 141.44.17.54 22
    86. 

  86. SUBJECTS_DIR=/home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    87. 

  87. _CONDOR_MAX_DAGMAN_LOG=0
    88. 

  88. _CONDOR_ANCESTOR_2639=2640:1372249771:4057910684
    89. 

  89. _CONDOR_JOB_AD=/var/lib/condor/execute/dir_13566/.job.ad
    90. 

  90. FSLLOCKDIR=
    91. 

  91. _CONDOR_SCRATCH_DIR=/var/lib/condor/execute/dir_13566
    92. 

  92. FIX_VERTEX_AREA=
    93. 

  93. NLSPATH=/usr/share/locale/%L/LC_MESSAGES/%N.cat
    94. 

  94. HOSTTYPE=x86_64-linux
    95. 

  95. VENDOR=unknown
    96. 

  96. OSTYPE=linux
    97. 

  97. MACHTYPE=x86_64
    98. 

  98. GROUP=fkaule
    99. 

  99. HOST=snake4
    100. 

  100. REMOTEHOST=
    101. 

  101. OMP_NUM_THREADS=1
    102. 

  102. REQUIRE_FS_MATCH=0
    103.