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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub010 --surf-wm-vol --ctab /opt/freesurfer/5.3.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake4
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub010
    14. 

  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 159951.796171, mm^3
    15. 

  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 161933.369147, mm^3
    16. 

  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 321885.165317, mm^3
    17. 

  17. # Measure Mask, MaskVol, Mask Volume, 1374696.000000, mm^3
    18. 

  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 925308.400873, mm^3
    19. 

  19. # SegVolFile mri/wmparc.mgz 
    20. 

  20. # SegVolFileTimeStamp  2013/08/08 22:06:21 
    21. 

  21. # ColorTable /opt/freesurfer/5.3.0/WMParcStatsLUT.txt 
    22. 

  22. # ColorTableTimeStamp 2013/05/13 23:21:15 
    23. 

  23. # InVolFile  mri/norm.mgz 
    24. 

  24. # InVolFileTimeStamp  2013/08/08 12:06:32 
    25. 

  25. # InVolFrame 0 
    26. 

  26. # PVVolFile  mri/norm.mgz 
    27. 

  27. # PVVolFileTimeStamp  2013/08/08 12:06:32 
    28. 

  28. # ExcludeSegId 0 
    29. 

  29. # Only reporting non-empty segmentations
    30. 

  30. # VoxelVolume_mm3 1 
    31. 

  31. # TableCol  1 ColHeader Index 
    32. 

  32. # TableCol  1 FieldName Index 
    33. 

  33. # TableCol  1 Units     NA 
    34. 

  34. # TableCol  2 ColHeader SegId 
    35. 

  35. # TableCol  2 FieldName Segmentation Id
    36. 

  36. # TableCol  2 Units     NA
    37. 

  37. # TableCol  3 ColHeader NVoxels 
    38. 

  38. # TableCol  3 FieldName Number of Voxels
    39. 

  39. # TableCol  3 Units     unitless
    40. 

  40. # TableCol  4 ColHeader Volume_mm3
    41. 

  41. # TableCol  4 FieldName Volume
    42. 

  42. # TableCol  4 Units     mm^3
    43. 

  43. # TableCol  5 ColHeader StructName
    44. 

  44. # TableCol  5 FieldName Structure Name
    45. 

  45. # TableCol  5 Units     NA
    46. 

  46. # TableCol  6 ColHeader normMean 
    47. 

  47. # TableCol  6 FieldName Intensity normMean
    48. 

  48. # TableCol  6 Units     MR
    49. 

  49. # TableCol  7 ColHeader normStdDev
    50. 

  50. # TableCol  7 FieldName Itensity normStdDev
    51. 

  51. # TableCol  7 Units     MR
    52. 

  52. # TableCol  8 ColHeader normMin
    53. 

  53. # TableCol  8 FieldName Intensity normMin
    54. 

  54. # TableCol  8 Units     MR
    55. 

  55. # TableCol  9 ColHeader normMax
    56. 

  56. # TableCol  9 FieldName Intensity normMax
    57. 

  57. # TableCol  9 Units     MR
    58. 

  58. # TableCol 10 ColHeader normRange
    59. 

  59. # TableCol 10 FieldName Intensity normRange
    60. 

  60. # TableCol 10 Units     MR
    61. 

  61. # NRows 70 
    62. 

  62. # NTableCols 10 
    63. 

  63. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    64. 

  64.   1 3001      3007     3007.5  wm-lh-bankssts                   107.1178     8.9745    67.0000   124.0000    57.0000 
    65. 

  65.   2 3002      1815     1814.6  wm-lh-caudalanteriorcingulate     97.4744    11.7799    41.0000   120.0000    79.0000 
    66. 

  66.   3 3003      4416     4416.1  wm-lh-caudalmiddlefrontal         99.7295     9.7648    67.0000   116.0000    49.0000 
    67. 

  67.   4 3005      2213     2212.6  wm-lh-cuneus                     101.4204    10.8103    70.0000   125.0000    55.0000 
    68. 

  68.   5 3006       700      700.2  wm-lh-entorhinal                  89.6488    10.7345    62.0000   121.0000    59.0000 
    69. 

  69.   6 3007      5229     5229.4  wm-lh-fusiform                    97.6413    10.4064    63.0000   124.0000    61.0000 
    70. 

  70.   7 3008      7393     7393.2  wm-lh-inferiorparietal           104.5521    11.5124    65.0000   130.0000    65.0000 
    71. 

  71.   8 3009      4544     4544.1  wm-lh-inferiortemporal            92.4236    13.2224    60.0000   120.0000    60.0000 
    72. 

  72.   9 3010      3195     3194.6  wm-lh-isthmuscingulate           105.1028    12.0152    14.0000   123.0000   109.0000 
    73. 

  73.  10 3011      7121     7120.5  wm-lh-lateraloccipital           102.7671    10.8061    37.0000   135.0000    98.0000 
    74. 

  74.  11 3012      4504     4504.4  wm-lh-lateralorbitofrontal        99.6983    11.9060    35.0000   124.0000    89.0000 
    75. 

  75.  12 3013      4379     4378.7  wm-lh-lingual                     93.3205    12.2795     7.0000   122.0000   115.0000 
    76. 

  76.  13 3014      2391     2391.3  wm-lh-medialorbitofrontal         91.3312    14.8780    13.0000   118.0000   105.0000 
    77. 

  77.  14 3015      3822     3821.7  wm-lh-middletemporal              94.2566    13.5481    57.0000   121.0000    64.0000 
    78. 

  78.  15 3016      1263     1263.1  wm-lh-parahippocampal             95.7379     9.0444    68.0000   115.0000    47.0000 
    79. 

  79.  16 3017      2899     2899.4  wm-lh-paracentral                101.6026     9.5407    70.0000   122.0000    52.0000 
    80. 

  80.  17 3018      2360     2360.0  wm-lh-parsopercularis             97.5739    10.2348    65.0000   115.0000    50.0000 
    81. 

  81.  18 3019       632      632.4  wm-lh-parsorbitalis              100.1901    11.4504    73.0000   121.0000    48.0000 
    82. 

  82.  19 3020      2051     2050.9  wm-lh-parstriangularis           101.3360     9.4797    71.0000   123.0000    52.0000 
    83. 

  83.  20 3021      2653     2652.6  wm-lh-pericalcarine               95.3694    14.2520     7.0000   120.0000   113.0000 
    84. 

  84.  21 3022      5421     5421.2  wm-lh-postcentral                 95.3815    11.2980    58.0000   120.0000    62.0000 
    85. 

  85.  22 3023      3201     3201.4  wm-lh-posteriorcingulate         104.1483    11.3267     8.0000   125.0000   117.0000 
    86. 

  86.  23 3024     10281    10281.1  wm-lh-precentral                  98.9279    10.1712    68.0000   120.0000    52.0000 
    87. 

  87.  24 3025      6670     6670.2  wm-lh-precuneus                  103.0898    12.2107    10.0000   126.0000   116.0000 
    88. 

  88.  25 3026      2855     2854.9  wm-lh-rostralanteriorcingulate    99.7448    11.0169    12.0000   118.0000   106.0000 
    89. 

  89.  26 3027      9121     9120.8  wm-lh-rostralmiddlefrontal        98.4542    11.9001    59.0000   122.0000    63.0000 
    90. 

  90.  27 3028     12124    12124.1  wm-lh-superiorfrontal             94.3201    11.2943    56.0000   115.0000    59.0000 
    91. 

  91.  28 3029      8530     8529.9  wm-lh-superiorparietal           103.6758    11.2222    67.0000   125.0000    58.0000 
    92. 

  92.  29 3030      4345     4344.9  wm-lh-superiortemporal            97.6545    12.1767    59.0000   123.0000    64.0000 
    93. 

  93.  30 3031      5673     5673.5  wm-lh-supramarginal              102.7850    12.8618    61.0000   126.0000    65.0000 
    94. 

  94.  31 3032       125      125.0  wm-lh-frontalpole                 87.3309    10.7642    65.0000   110.0000    45.0000 
    95. 

  95.  32 3033       501      500.9  wm-lh-temporalpole                88.7495    10.5017    65.0000   116.0000    51.0000 
    96. 

  96.  33 3034       598      598.4  wm-lh-transversetemporal         103.8053     8.5751    80.0000   121.0000    41.0000 
    97. 

  97.  34 3035      6063     6063.5  wm-lh-insula                      98.7586    12.1573    41.0000   125.0000    84.0000 
    98. 

  98.  35 4001      3059     3058.9  wm-rh-bankssts                   103.3972     9.5740    65.0000   124.0000    59.0000 
    99. 

  99.  36 4002      2345     2345.1  wm-rh-caudalanteriorcingulate     97.6295    11.0097    35.0000   114.0000    79.0000 
    100. 

  100.  37 4003      3739     3738.9  wm-rh-caudalmiddlefrontal         98.1726    10.3651    62.0000   117.0000    55.0000 
    101. 

  101.  38 4005      2023     2022.9  wm-rh-cuneus                      99.0484    11.6860    66.0000   127.0000    61.0000 
    102. 

  102.  39 4006       568      568.5  wm-rh-entorhinal                  88.8041    10.8304    66.0000   117.0000    51.0000 
    103. 

  103.  40 4007      4504     4503.5  wm-rh-fusiform                    93.9078    10.5929    42.0000   117.0000    75.0000 
    104. 

  104.  41 4008      9271     9271.3  wm-rh-inferiorparietal           101.5928    11.9409    64.0000   123.0000    59.0000 
    105. 

  105.  42 4009      4136     4136.0  wm-rh-inferiortemporal            89.6210    12.0711    59.0000   117.0000    58.0000 
    106. 

  106.  43 4010      2671     2671.1  wm-rh-isthmuscingulate           105.2595     9.2574    45.0000   125.0000    80.0000 
    107. 

  107.  44 4011      6333     6333.2  wm-rh-lateraloccipital            98.9997    10.9840    60.0000   127.0000    67.0000 
    108. 

  108.  45 4012      4706     4706.5  wm-rh-lateralorbitofrontal       103.1857    12.4795    42.0000   123.0000    81.0000 
    109. 

  109.  46 4013      4280     4280.3  wm-rh-lingual                     92.6764    11.6066    22.0000   118.0000    96.0000 
    110. 

  110.  47 4014      2523     2523.0  wm-rh-medialorbitofrontal        100.6819    12.8144    53.0000   121.0000    68.0000 
    111. 

  111.  48 4015      4412     4412.4  wm-rh-middletemporal              91.9412    12.2088    58.0000   117.0000    59.0000 
    112. 

  112.  49 4016      1130     1129.9  wm-rh-parahippocampal             93.5184     9.8661    35.0000   117.0000    82.0000 
    113. 

  113.  50 4017      3348     3348.1  wm-rh-paracentral                100.6376     9.4846    67.0000   123.0000    56.0000 
    114. 

  114.  51 4018      2198     2198.0  wm-rh-parsopercularis             96.9831    10.8061    62.0000   117.0000    55.0000 
    115. 

  115.  52 4019       750      749.9  wm-rh-parsorbitalis               98.5602    12.3111    65.0000   121.0000    56.0000 
    116. 

  116.  53 4020      2763     2763.0  wm-rh-parstriangularis            99.9111    10.9208    67.0000   122.0000    55.0000 
    117. 

  117.  54 4021      2843     2843.1  wm-rh-pericalcarine               95.2017    12.8938     9.0000   125.0000   116.0000 
    118. 

  118.  55 4022      5877     5877.0  wm-rh-postcentral                 93.4584    11.4563    63.0000   119.0000    56.0000 
    119. 

  119.  56 4023      3024     3023.8  wm-rh-posteriorcingulate         102.5707    10.8327    40.0000   123.0000    83.0000 
    120. 

  120.  57 4024     10984    10983.7  wm-rh-precentral                  96.9082    10.6233    51.0000   120.0000    69.0000 
    121. 

  121.  58 4025      7561     7561.2  wm-rh-precuneus                  103.9460    10.4142    65.0000   124.0000    59.0000 
    122. 

  122.  59 4026      1612     1612.1  wm-rh-rostralanteriorcingulate    97.9423    14.5160    26.0000   119.0000    93.0000 
    123. 

  123.  60 4027      9128     9128.2  wm-rh-rostralmiddlefrontal        98.2178    12.0295    62.0000   122.0000    60.0000 
    124. 

  124.  61 4028     11986    11985.8  wm-rh-superiorfrontal             95.2135    11.1875    59.0000   118.0000    59.0000 
    125. 

  125.  62 4029      8349     8348.8  wm-rh-superiorparietal           102.0473    11.4300    68.0000   124.0000    56.0000 
    126. 

  126.  63 4030      4035     4034.9  wm-rh-superiortemporal            93.7963    11.4632    61.0000   118.0000    57.0000 
    127. 

  127.  64 4031      5576     5575.7  wm-rh-supramarginal              100.9853    12.3597    59.0000   121.0000    62.0000 
    128. 

  128.  65 4032       187      186.5  wm-rh-frontalpole                 87.6064    10.9722    65.0000   108.0000    43.0000 
    129. 

  129.  66 4033       568      568.1  wm-rh-temporalpole                90.3934     9.5608    66.0000   116.0000    50.0000 
    130. 

  130.  67 4034       397      397.3  wm-rh-transversetemporal          99.4724     8.1753    76.0000   116.0000    40.0000 
    131. 

  131.  68 4035      6007     6006.9  wm-rh-insula                      96.6081    11.9002    51.0000   121.0000    70.0000 
    132. 

  132.  69 5001     18696    18696.2  Left-UnsegmentedWhiteMatter      104.0076    11.6285     5.0000   128.0000   123.0000 
    133. 

  133.  70 5002     19159    19158.8  Right-UnsegmentedWhiteMatter     103.0420    10.8336     7.0000   125.0000   118.0000 
    134.