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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub008 --surf-wm-vol --ctab /opt/freesurfer/5.3.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake5
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub008
    14. 

  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 223007.662646, mm^3
    15. 

  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 226664.946630, mm^3
    16. 

  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 449672.609276, mm^3
    17. 

  17. # Measure Mask, MaskVol, Mask Volume, 1682656.000000, mm^3
    18. 

  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1226062.213890, mm^3
    19. 

  19. # SegVolFile mri/wmparc.mgz 
    20. 

  20. # SegVolFileTimeStamp  2013/08/09 00:17:57 
    21. 

  21. # ColorTable /opt/freesurfer/5.3.0/WMParcStatsLUT.txt 
    22. 

  22. # ColorTableTimeStamp 2013/05/13 23:21:15 
    23. 

  23. # InVolFile  mri/norm.mgz 
    24. 

  24. # InVolFileTimeStamp  2013/08/08 12:08:43 
    25. 

  25. # InVolFrame 0 
    26. 

  26. # PVVolFile  mri/norm.mgz 
    27. 

  27. # PVVolFileTimeStamp  2013/08/08 12:08:43 
    28. 

  28. # ExcludeSegId 0 
    29. 

  29. # Only reporting non-empty segmentations
    30. 

  30. # VoxelVolume_mm3 1 
    31. 

  31. # TableCol  1 ColHeader Index 
    32. 

  32. # TableCol  1 FieldName Index 
    33. 

  33. # TableCol  1 Units     NA 
    34. 

  34. # TableCol  2 ColHeader SegId 
    35. 

  35. # TableCol  2 FieldName Segmentation Id
    36. 

  36. # TableCol  2 Units     NA
    37. 

  37. # TableCol  3 ColHeader NVoxels 
    38. 

  38. # TableCol  3 FieldName Number of Voxels
    39. 

  39. # TableCol  3 Units     unitless
    40. 

  40. # TableCol  4 ColHeader Volume_mm3
    41. 

  41. # TableCol  4 FieldName Volume
    42. 

  42. # TableCol  4 Units     mm^3
    43. 

  43. # TableCol  5 ColHeader StructName
    44. 

  44. # TableCol  5 FieldName Structure Name
    45. 

  45. # TableCol  5 Units     NA
    46. 

  46. # TableCol  6 ColHeader normMean 
    47. 

  47. # TableCol  6 FieldName Intensity normMean
    48. 

  48. # TableCol  6 Units     MR
    49. 

  49. # TableCol  7 ColHeader normStdDev
    50. 

  50. # TableCol  7 FieldName Itensity normStdDev
    51. 

  51. # TableCol  7 Units     MR
    52. 

  52. # TableCol  8 ColHeader normMin
    53. 

  53. # TableCol  8 FieldName Intensity normMin
    54. 

  54. # TableCol  8 Units     MR
    55. 

  55. # TableCol  9 ColHeader normMax
    56. 

  56. # TableCol  9 FieldName Intensity normMax
    57. 

  57. # TableCol  9 Units     MR
    58. 

  58. # TableCol 10 ColHeader normRange
    59. 

  59. # TableCol 10 FieldName Intensity normRange
    60. 

  60. # TableCol 10 Units     MR
    61. 

  61. # NRows 70 
    62. 

  62. # NTableCols 10 
    63. 

  63. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    64. 

  64.   1 3001      2923     2922.9  wm-lh-bankssts                   104.2344    10.4117    67.0000   127.0000    60.0000 
    65. 

  65.   2 3002      2403     2402.8  wm-lh-caudalanteriorcingulate    100.4537     8.2925    52.0000   117.0000    65.0000 
    66. 

  66.   3 3003      6567     6567.5  wm-lh-caudalmiddlefrontal         97.4574     9.6702    61.0000   116.0000    55.0000 
    67. 

  67.   4 3005      2075     2074.5  wm-lh-cuneus                     105.0573    10.9184    76.0000   131.0000    55.0000 
    68. 

  68.   5 3006       978      978.4  wm-lh-entorhinal                  93.0075    10.1330    38.0000   115.0000    77.0000 
    69. 

  69.   6 3007      6516     6516.0  wm-lh-fusiform                    99.4681    10.4107    64.0000   126.0000    62.0000 
    70. 

  70.   7 3008      8911     8910.9  wm-lh-inferiorparietal           107.1670    10.2771    71.0000   129.0000    58.0000 
    71. 

  71.   8 3009      5267     5267.2  wm-lh-inferiortemporal            96.3988    11.8966    62.0000   121.0000    59.0000 
    72. 

  72.   9 3010      4062     4062.0  wm-lh-isthmuscingulate           103.9028     8.3804    40.0000   121.0000    81.0000 
    73. 

  73.  10 3011      7595     7595.4  wm-lh-lateraloccipital           102.8690    10.3716    67.0000   130.0000    63.0000 
    74. 

  74.  11 3012      6363     6362.8  wm-lh-lateralorbitofrontal        99.2982    10.1472    60.0000   122.0000    62.0000 
    75. 

  75.  12 3013      4889     4888.6  wm-lh-lingual                     99.2584    10.6147    41.0000   131.0000    90.0000 
    76. 

  76.  13 3014      2784     2784.0  wm-lh-medialorbitofrontal         89.2554    14.4236    23.0000   117.0000    94.0000 
    77. 

  77.  14 3015      4737     4737.2  wm-lh-middletemporal              94.2848    12.2268    63.0000   120.0000    57.0000 
    78. 

  78.  15 3016      1660     1659.9  wm-lh-parahippocampal             96.8188     9.2007    63.0000   118.0000    55.0000 
    79. 

  79.  16 3017      4405     4404.8  wm-lh-paracentral                100.3536     9.1863    70.0000   122.0000    52.0000 
    80. 

  80.  17 3018      3645     3645.1  wm-lh-parsopercularis             97.7884     9.0353    70.0000   115.0000    45.0000 
    81. 

  81.  18 3019       791      790.7  wm-lh-parsorbitalis               98.2279    10.6665    70.0000   124.0000    54.0000 
    82. 

  82.  19 3020      2811     2810.8  wm-lh-parstriangularis           100.5752     8.6129    71.0000   119.0000    48.0000 
    83. 

  83.  20 3021      1951     1951.5  wm-lh-pericalcarine               99.8626    10.6033    29.0000   119.0000    90.0000 
    84. 

  84.  21 3022      8044     8043.7  wm-lh-postcentral                 96.8615     9.6469    68.0000   121.0000    53.0000 
    85. 

  85.  22 3023      4569     4569.3  wm-lh-posteriorcingulate         103.3793     9.2019    26.0000   127.0000   101.0000 
    86. 

  86.  23 3024     13774    13774.1  wm-lh-precentral                  98.6806     8.9301    68.0000   119.0000    51.0000 
    87. 

  87.  24 3025     10487    10487.2  wm-lh-precuneus                  105.1659     9.1478    50.0000   129.0000    79.0000 
    88. 

  88.  25 3026      3073     3073.3  wm-lh-rostralanteriorcingulate   101.1975    11.0575     9.0000   128.0000   119.0000 
    89. 

  89.  26 3027     13750    13749.7  wm-lh-rostralmiddlefrontal        99.0174    10.2698    65.0000   123.0000    58.0000 
    90. 

  90.  27 3028     18940    18940.2  wm-lh-superiorfrontal             93.7649    10.5545    54.0000   118.0000    64.0000 
    91. 

  91.  28 3029     12856    12855.7  wm-lh-superiorparietal           107.1784     9.0707    67.0000   131.0000    64.0000 
    92. 

  92.  29 3030      8210     8210.2  wm-lh-superiortemporal           100.7745    10.8665    67.0000   125.0000    58.0000 
    93. 

  93.  30 3031      9876     9876.0  wm-lh-supramarginal              104.5767    11.6249    68.0000   128.0000    60.0000 
    94. 

  94.  31 3032       157      156.8  wm-lh-frontalpole                 87.6582     9.4450    66.0000   111.0000    45.0000 
    95. 

  95.  32 3033       668      667.7  wm-lh-temporalpole                87.4493    10.1401    60.0000   109.0000    49.0000 
    96. 

  96.  33 3034       923      923.0  wm-lh-transversetemporal         103.2981     8.3997    80.0000   125.0000    45.0000 
    97. 

  97.  34 3035      8767     8767.3  wm-lh-insula                      99.2155    12.3065    45.0000   125.0000    80.0000 
    98. 

  98.  35 4001      2997     2997.1  wm-rh-bankssts                   105.5497     8.5247    70.0000   125.0000    55.0000 
    99. 

  99.  36 4002      4168     4168.3  wm-rh-caudalanteriorcingulate     98.2806     9.0215    59.0000   118.0000    59.0000 
    100. 

  100.  37 4003      6879     6879.2  wm-rh-caudalmiddlefrontal         95.6795     9.7916    64.0000   113.0000    49.0000 
    101. 

  101.  38 4005      2067     2067.2  wm-rh-cuneus                     104.1256    10.7539    69.0000   126.0000    57.0000 
    102. 

  102.  39 4006       770      769.7  wm-rh-entorhinal                  88.6140     9.1253    66.0000   117.0000    51.0000 
    103. 

  103.  40 4007      6405     6404.8  wm-rh-fusiform                    97.0741    10.5113    66.0000   128.0000    62.0000 
    104. 

  104.  41 4008     10354    10354.1  wm-rh-inferiorparietal           106.7594     9.8077    70.0000   129.0000    59.0000 
    105. 

  105.  42 4009      5369     5369.3  wm-rh-inferiortemporal            94.3523    11.0075    63.0000   121.0000    58.0000 
    106. 

  106.  43 4010      3556     3556.4  wm-rh-isthmuscingulate           104.2368     7.3621    55.0000   121.0000    66.0000 
    107. 

  107.  44 4011      7021     7020.7  wm-rh-lateraloccipital           105.4014    10.1648    70.0000   132.0000    62.0000 
    108. 

  108.  45 4012      6531     6531.1  wm-rh-lateralorbitofrontal       102.9081    10.6191    56.0000   129.0000    73.0000 
    109. 

  109.  46 4013      4531     4531.1  wm-rh-lingual                     98.1541    10.9774    24.0000   124.0000   100.0000 
    110. 

  110.  47 4014      3238     3237.8  wm-rh-medialorbitofrontal         98.5009    11.9611    43.0000   122.0000    79.0000 
    111. 

  111.  48 4015      5531     5531.4  wm-rh-middletemporal              94.1216    11.1097    62.0000   121.0000    59.0000 
    112. 

  112.  49 4016      1409     1409.2  wm-rh-parahippocampal             94.2445     9.0351    49.0000   119.0000    70.0000 
    113. 

  113.  50 4017      5391     5390.7  wm-rh-paracentral                 99.1313     9.6501    60.0000   121.0000    61.0000 
    114. 

  114.  51 4018      3352     3352.0  wm-rh-parsopercularis             96.9016     9.0466    67.0000   118.0000    51.0000 
    115. 

  115.  52 4019      1014     1013.6  wm-rh-parsorbitalis              100.0532    10.9964    71.0000   126.0000    55.0000 
    116. 

  116.  53 4020      3123     3123.0  wm-rh-parstriangularis           100.9335     9.7243    70.0000   125.0000    55.0000 
    117. 

  117.  54 4021      2679     2678.8  wm-rh-pericalcarine              101.9359    10.7094    15.0000   127.0000   112.0000 
    118. 

  118.  55 4022      8291     8291.3  wm-rh-postcentral                 95.1598     9.7459    68.0000   120.0000    52.0000 
    119. 

  119.  56 4023      4451     4451.2  wm-rh-posteriorcingulate         101.8701    10.2408    28.0000   126.0000    98.0000 
    120. 

  120.  57 4024     13952    13951.8  wm-rh-precentral                  96.9992     8.8709    68.0000   119.0000    51.0000 
    121. 

  121.  58 4025     11525    11525.2  wm-rh-precuneus                  104.9923     9.2353    50.0000   128.0000    78.0000 
    122. 

  122.  59 4026      2209     2208.9  wm-rh-rostralanteriorcingulate    99.2547    11.4769    57.0000   124.0000    67.0000 
    123. 

  123.  60 4027     12947    12946.9  wm-rh-rostralmiddlefrontal        98.5740    10.8657    64.0000   123.0000    59.0000 
    124. 

  124.  61 4028     17777    17776.8  wm-rh-superiorfrontal             93.8678    10.4226    54.0000   121.0000    67.0000 
    125. 

  125.  62 4029     11544    11543.5  wm-rh-superiorparietal           105.8421     9.2321    63.0000   128.0000    65.0000 
    126. 

  126.  63 4030      8328     8328.4  wm-rh-superiortemporal            97.1276     9.6324    65.0000   122.0000    57.0000 
    127. 

  127.  64 4031      9337     9336.9  wm-rh-supramarginal              103.1659    10.7080    67.0000   130.0000    63.0000 
    128. 

  128.  65 4032       429      429.2  wm-rh-frontalpole                 93.7937    11.0324    67.0000   112.0000    45.0000 
    129. 

  129.  66 4033       622      621.9  wm-rh-temporalpole                87.5221     9.5818    67.0000   113.0000    46.0000 
    130. 

  130.  67 4034       625      624.5  wm-rh-transversetemporal         100.1600     8.5880    78.0000   131.0000    53.0000 
    131. 

  131.  68 4035      8528     8528.4  wm-rh-insula                      95.3294    12.3366    53.0000   122.0000    69.0000 
    132. 

  132.  69 5001     30457    30456.9  Left-UnsegmentedWhiteMatter      103.7370    11.1559    11.0000   129.0000   118.0000 
    133. 

  133.  70 5002     29917    29917.2  Right-UnsegmentedWhiteMatter     103.0255    10.2733    13.0000   127.0000   114.0000 
    134.