cortical-surfaces-freesurfer/sub-08/mri/transforms/T2raw.dat.sum

$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 
sysname  Linux
hostname snake5
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/bbr.pass1.dat
subject sub008
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 1
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000000
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376182120
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.998   0.036   0.044   0.598;
-0.039  -0.132   0.991  -0.147;
 0.041  -0.991  -0.130   0.151;
 0.000   0.000   0.000   1.000;

Initial costs ----------------
Number of surface hits 258785
WM  Intensity0    53.7508 +/-   7.7774
Ctx Intensity0    66.8362 +/-   8.3162
Pct Contrast0     21.8125 +/-  13.8684
Cost   0.1059
RelCost   0.1043

Brute force preopt -0.1 0.1 0.1, n = 729
     0  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000      0.1061   0.1061  0.0
    12  -0.1000  -0.1000  -0.1000   0.0000   0.0000  -0.1000      0.1057   0.1057  0.0
    19  -0.1000  -0.1000  -0.1000   0.1000  -0.1000   0.0000      0.1040   0.1040  0.0
    22  -0.1000  -0.1000  -0.1000   0.1000   0.0000   0.0000      0.1036   0.1036  0.0
    23  -0.1000  -0.1000  -0.1000   0.1000   0.0000   0.1000      0.1035   0.1035  0.0
   103  -0.1000   0.0000  -0.1000   0.1000   0.0000   0.0000      0.1025   0.1025  0.0
   104  -0.1000   0.0000  -0.1000   0.1000   0.0000   0.1000      0.1025   0.1025  0.0
   121  -0.1000   0.0000   0.0000   0.0000   0.0000   0.0000      0.1023   0.1023  0.0
   131  -0.1000   0.0000   0.0000   0.1000   0.0000   0.1000      0.1021   0.1021  0.0
   265   0.0000  -0.1000  -0.1000   0.1000   0.0000   0.0000      0.1019   0.1019  0.0
   301   0.0000  -0.1000   0.1000  -0.1000   0.0000   0.0000      0.1013   0.1013  0.0
   364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.1005   0.1005  0.0

Final costs ----------------
Number of surface hits 258785
WM  Intensity0    53.7752 +/-   7.8002
Ctx Intensity0    66.8330 +/-   8.3074
Pct Contrast0     21.7681 +/-  13.8176
Cost   0.1025
RelCost   0.1043
Number of iterations     6
Min cost was 0.102489
RelMinCost   0.1010
Number of FunctionCalls   465
OptimizationTime 59.014000 sec
Parameters at optimum (transmm, rotdeg)
-0.03010  0.09769 -0.17621  0.05157 -0.02253  0.06379 
Number of surface hits 258785
WM  Intensity    53.7752 +/-   7.8002
Ctx Intensity    66.8330 +/-   8.3074
Pct Contrast     21.7681 +/-  13.8176
Cost at optimum   0.1025
RelCostOptimum   0.1010
nhits= 258785 wmmn=   53.7752 wmstd=  7.8002 constd=   13.8176 ctxmn=   66.8330 ctxstd=  8.3074 conmn =  21.7681 costmn =   0.1025 
#C#  -0.030   0.098  -0.176  0.052 -0.023  0.064 0.000000 0.000000 0.102489 53.775181 66.832976 21.768091 0.000000 0.500000     1 0
Reg at min cost was 
 0.998   0.036   0.043   0.568;
-0.038  -0.131   0.991  -0.049;
 0.042  -0.991  -0.129  -0.025;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
-0.000  -0.001   0.001   0.030;
-0.001  -0.001  -0.000  -0.098;
-0.000   0.000  -0.001   0.176;
 0.000   0.000   0.000   0.000;

Surface RMS Diff (mm) 0.192733 0.239415