cortical-surfaces-freesurfer/sub-08/mri/transforms/T2raw.dat.log

Logfile for bbregister
Thu Aug  8 22:52:57 CEST 2013

setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/scripts
/opt/freesurfer/5.3.0/bin/bbregister --s sub008 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/orig/T2raw.mgz --lta /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.lta --init-fsl --T2

$Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $
Linux snake5 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
FREESURFER_HOME /opt/freesurfer/5.3.0
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii 
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/orig/T2raw.mgz...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.998831, -0.0240037, -0.0419561)
j_ras = (-0.0295702, 0.990055, 0.137541)
k_ras = (-0.0382373, -0.138621, 0.989607)
writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii...
fslregister --s sub008 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister --dof 6 --fsvol brainmask.mgz

Log file is /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.init.dat.fslregister.log

Thu Aug  8 22:53:06 CEST 2013
--s sub008 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister --dof 6 --fsvol brainmask.mgz
$Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $
snake5
Linux snake5 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
nIters 1
--------------------------------------
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/scripts
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/refvol.fslregister.nii
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/refvol.fslregister.nii 
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/brainmask.mgz...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 2.32831e-09, -3.72529e-09)
j_ras = (7.45058e-09, 2.98023e-08, -1)
k_ras = (-2.79397e-09, 1, 0)
writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/refvol.fslregister.nii...
--------------------------------------
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/scripts
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/movvol.fslregister.nii --frame 0
mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/movvol.fslregister.nii --frame 0 
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.998831, -0.0240037, -0.0419561)
j_ras = (-0.0295702, 0.990055, 0.137541)
k_ras = (-0.0382373, -0.138621, 0.989607)
keeping frame 0
writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/movvol.fslregister.nii...
Mov determinant is -0.311055
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/scripts
tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/movvol.fslregister.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/reg0.16153.dat --regheader --fslregout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.init.dat.fsl.mat0 --s sub008 --noedit
tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
INFO: no target volume specified, assuming FreeSurfer orig volume.
target  volume orig
movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/movvol.fslregister.nii
reg file       /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/reg0.16153.dat
LoadVol        0
ZeroCRAS       0
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
Diagnostic Level -1
INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/orig.mgz
Ttarg: --------------------
-1.000   0.000   0.000   128.000;
 0.000   0.000   1.000  -128.000;
 0.000  -1.000   0.000   128.000;
 0.000   0.000   0.000   1.000;
INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/movvol.fslregister.nii
Tmov: --------------------
-0.700   0.000   0.000   95.883;
 0.000   0.000   0.667  -128.000;
 0.000  -0.667   0.000   128.000;
 0.000   0.000   0.000   1.000;
mkheaderreg = 1, float2int = 0
Computing reg from header (and possibly input matrix)
---- Input registration matrix (computed) --------
 0.999   0.024   0.042   0.000;
-0.038  -0.139   0.990   0.000;
 0.030  -0.990  -0.138  -0.000;
 0.000   0.000   0.000   1.000;
---------------------------------------
---- Input registration matrix --------
 0.999   0.024   0.042   0.000;
-0.038  -0.139   0.990   0.000;
 0.030  -0.990  -0.138  -0.000;
 0.000   0.000   0.000   1.000;
Determinant 1
subject = sub008
RegMat ---------------------------
 0.999   0.024   0.042   0.000;
-0.038  -0.139   0.990   0.000;
 0.030  -0.990  -0.138  -0.000;
 0.000   0.000   0.000   1.000;
FSLOUTPUTTYPE NIFTI 
tkreg2FSL: mov det = -0.311055, ref det = -1
Thu Aug  8 22:53:22 CEST 2013
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/scripts
flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.init.dat.fsl.mat0
Thu Aug  8 22:58:14 CEST 2013
/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/scripts
flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.init.dat.fsl.mat -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/5.3.0/bin/flirt.newdefault.20080811.sch
tkregister2_cmdl --s sub008 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.init.dat --fslreg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.init.dat.fsl.mat --noedit
tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
---- FSL registration matrix --------
 0.998   0.039   0.042   22.232;
 0.047  -0.135  -0.990   267.653;
-0.033   0.990  -0.136   21.515;
 0.000   0.000   0.000   1.000;
---------------------------------------
INFO: no target volume specified, assuming FreeSurfer orig volume.
target  volume orig
movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii
reg file       /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.init.dat
LoadVol        0
ZeroCRAS       0
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
Diagnostic Level -1
INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/orig.mgz
Ttarg: --------------------
-1.000   0.000   0.000   128.000;
 0.000   0.000   1.000  -128.000;
 0.000  -1.000   0.000   128.000;
 0.000   0.000   0.000   1.000;
INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii
Tmov: --------------------
-0.700   0.000   0.000   95.883;
 0.000   0.000   0.667  -128.000;
 0.000  -0.667   0.000   128.000;
 0.000   0.000   0.000   1.000;
mkheaderreg = 0, float2int = 0
FSLOUTPUTTYPE NIFTI 
fsl2TkReg: mov det = -0.311055, ref det = -1
---- Input registration matrix (computed) --------
 0.998   0.033   0.047   0.342;
-0.042  -0.136   0.990   0.143;
 0.039  -0.990  -0.135  -0.375;
 0.000   0.000   0.000   1.000;
---------------------------------------
---- Input registration matrix --------
 0.998   0.033   0.047   0.342;
-0.042  -0.136   0.990   0.143;
 0.039  -0.990  -0.135  -0.375;
 0.000   0.000   0.000   1.000;
Determinant 0.999999
subject = sub008
RegMat ---------------------------
 0.998   0.033   0.047   0.342;
-0.042  -0.136   0.990   0.143;
 0.039  -0.990  -0.135  -0.375;
 0.000   0.000   0.000   1.000;
 
Started at Thu Aug 8 22:53:06 CEST 2013 
Ended   at Thu Aug  8 23:04:20 CEST 2013
 
fslregister Done
 
To check results, run:
tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.init.dat --surf orig
 
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 
sysname  Linux
hostname snake5
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.init.dat
subject sub008
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/bbr.pass1.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 100
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000100
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376473579
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.998   0.033   0.047   0.342;
-0.042  -0.136   0.990   0.143;
 0.039  -0.990  -0.135  -0.375;
 0.000   0.000   0.000   1.000;

Loading mov
Projecting LH Surfs
Loading lh.white surf
Loading lh.thickness for GM
GM Proj: 1 0.500000 2.000000
WM Proj: 0 0.500000 2.000000
Projecting RH Surfs
Loading rh.white surf
Loading rh.thickness
Projecting RH Surfs
Computing relative cost
 0  -25.0 -25.0 -25.0   1.043830
 1  -25.0 -25.0  25.0   1.044085
 2  -25.0  25.0 -25.0   1.009641
 3  -25.0  25.0  25.0   1.001340
 4   25.0 -25.0 -25.0   1.014469
 5   25.0 -25.0  25.0   1.027498
 6   25.0  25.0 -25.0   0.998495
 7   25.0  25.0  25.0   1.006455
REL:  8  0.179395    8.145813  1.018227 rel = 0.176183 
Initial costs ----------------
Number of surface hits 2602
WM  Intensity    54.0537 +/-   8.2981
Ctx Intensity    67.1441 +/-   8.6852
Pct Contrast     21.7337 +/-  15.7014
Cost   0.1794
RelCost   0.1762

------------------------------------
Brute force preopt -4 4 4, n = 729
     0  -4.0000  -4.0000  -4.0000  -4.0000  -4.0000  -4.0000      1.0033   1.0033  0.0
     1  -4.0000  -4.0000  -4.0000  -4.0000  -4.0000   0.0000      0.9538   0.9538  0.0
    15  -4.0000  -4.0000  -4.0000   0.0000   4.0000  -4.0000      0.8588   0.8588  0.0
    39  -4.0000  -4.0000   0.0000   0.0000   0.0000  -4.0000      0.8477   0.8477  0.0
    57  -4.0000  -4.0000   4.0000  -4.0000   0.0000  -4.0000      0.8150   0.8150  0.0
   102  -4.0000   0.0000  -4.0000   4.0000   0.0000  -4.0000      0.7977   0.7977  0.0
   120  -4.0000   0.0000   0.0000   0.0000   0.0000  -4.0000      0.6736   0.6736  0.0
   346   0.0000   0.0000  -4.0000   4.0000   0.0000   0.0000      0.6519   0.6519  0.0
   364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.1794   0.1794  0.0
Brute Force --------------------------
Min cost was 0.179395
Number of iterations   729
Search time 2.478000 sec
Parameters at best (transmm, rotdeg)
  0.000   0.000   0.000  0.000  0.000  0.000 
--------------------------------------------

Starting Powell Minimization
Init Powel Params dof = 6
0 0
1 0
2 0
3 0
4 0
5 0
   7  0.083  0.000  0.000  0.000  0.000  0.000   0.1788908257
  11  0.103  0.000  0.000  0.000  0.000  0.000   0.1788113664
  12  0.102  0.000  0.000  0.000  0.000  0.000   0.1788109967
  13  0.101  0.000  0.000  0.000  0.000  0.000   0.1788101963
  14  0.094  0.000  0.000  0.000  0.000  0.000   0.1788087307
  15  0.096  0.000  0.000  0.000  0.000  0.000   0.1788083538
  16  0.097  0.000  0.000  0.000  0.000  0.000   0.1788083353
  17  0.098  0.000  0.000  0.000  0.000  0.000   0.1788082993
  23  0.098 -0.618  0.000  0.000  0.000  0.000   0.1698593437
  25  0.098 -0.369  0.000  0.000  0.000  0.000   0.1658068839
  27  0.098 -0.228  0.000  0.000  0.000  0.000   0.1637342718
  29  0.098 -0.282  0.000  0.000  0.000  0.000   0.1633513225
  32  0.098 -0.278  0.000  0.000  0.000  0.000   0.1633322451
  34  0.098 -0.279  0.000  0.000  0.000  0.000   0.1633322301
  37  0.098 -0.279  1.000  0.000  0.000  0.000   0.1222905379
  41  0.098 -0.279  0.618  0.000  0.000  0.000   0.1186472964
  42  0.098 -0.279  0.762  0.000  0.000  0.000   0.1151775923
  43  0.098 -0.279  0.775  0.000  0.000  0.000   0.1150861281
  53  0.098 -0.279  0.775  0.162  0.000  0.000   0.1101850265
  54  0.098 -0.279  0.775  0.164  0.000  0.000   0.1101415146
  56  0.098 -0.279  0.775  0.201  0.000  0.000   0.1096902317
  67  0.098 -0.279  0.775  0.201 -0.014  0.000   0.1089673571
  68  0.098 -0.279  0.775  0.201 -0.054  0.000   0.1075960717
  70  0.098 -0.279  0.775  0.201 -0.059  0.000   0.1075513431
  71  0.098 -0.279  0.775  0.201 -0.061  0.000   0.1075435169
  72  0.098 -0.279  0.775  0.201 -0.062  0.000   0.1075420881
  84  0.098 -0.279  0.775  0.201 -0.062  0.001   0.1075393859
  85  0.098 -0.279  0.775  0.201 -0.062  0.005   0.1075338245
  87  0.098 -0.279  0.775  0.201 -0.062  0.006   0.1075331917
  98  0.132 -0.279  0.775  0.201 -0.062  0.006   0.1073429426
  99  0.126 -0.279  0.775  0.201 -0.062  0.006   0.1072904526
 100  0.120 -0.279  0.775  0.201 -0.062  0.006   0.1072734213
 113  0.120 -0.313  0.775  0.201 -0.062  0.006   0.1072107458
 115  0.120 -0.316  0.775  0.201 -0.062  0.006   0.1072043866
 116  0.120 -0.322  0.775  0.201 -0.062  0.006   0.1072011418
 117  0.120 -0.321  0.775  0.201 -0.062  0.006   0.1072010748
 125  0.120 -0.321  0.529  0.201 -0.062  0.006   0.1055272246
 126  0.120 -0.321  0.594  0.201 -0.062  0.006   0.1055181598
 127  0.120 -0.321  0.564  0.201 -0.062  0.006   0.1053558387
 128  0.120 -0.321  0.562  0.201 -0.062  0.006   0.1053517904
 129  0.120 -0.321  0.550  0.201 -0.062  0.006   0.1053505829
 130  0.120 -0.321  0.556  0.201 -0.062  0.006   0.1053472670
 132  0.120 -0.321  0.557  0.201 -0.062  0.006   0.1053458770
 133  0.120 -0.321  0.559  0.201 -0.062  0.006   0.1053446870
 142  0.120 -0.321  0.559  0.234 -0.062  0.006   0.1047423037
 144  0.120 -0.321  0.559  0.242 -0.062  0.006   0.1047401270
 145  0.120 -0.321  0.559  0.238 -0.062  0.006   0.1047344088
 146  0.120 -0.321  0.559  0.237 -0.062  0.006   0.1047336598
 155  0.120 -0.321  0.559  0.237 -0.091  0.006   0.1043849282
 157  0.120 -0.321  0.559  0.237 -0.086  0.006   0.1043670149
 158  0.120 -0.321  0.559  0.237 -0.085  0.006   0.1043669088
 166  0.120 -0.321  0.559  0.237 -0.085  0.128   0.1040699852
 171  0.120 -0.321  0.559  0.237 -0.085  0.142   0.1040177846
 173  0.120 -0.321  0.559  0.237 -0.085  0.139   0.1040152898
 174  0.120 -0.321  0.559  0.237 -0.085  0.140   0.1040148816
 183  0.194 -0.321  0.559  0.237 -0.085  0.140   0.1022066826
 184  0.244 -0.321  0.559  0.237 -0.085  0.140   0.1020288834
 185  0.230 -0.321  0.559  0.237 -0.085  0.140   0.1019663545
 186  0.227 -0.321  0.559  0.237 -0.085  0.140   0.1019609742
 187  0.221 -0.321  0.559  0.237 -0.085  0.140   0.1019521303
 198  0.221 -0.243  0.559  0.237 -0.085  0.140   0.1018731015
 199  0.221 -0.277  0.559  0.237 -0.085  0.140   0.1015985923
 200  0.221 -0.279  0.559  0.237 -0.085  0.140   0.1015701679
 201  0.221 -0.295  0.559  0.237 -0.085  0.140   0.1014672431
 203  0.221 -0.293  0.559  0.237 -0.085  0.140   0.1014668992
 205  0.221 -0.294  0.559  0.237 -0.085  0.140   0.1014659053
 214  0.221 -0.294  0.541  0.237 -0.085  0.140   0.1013283221
 216  0.221 -0.294  0.544  0.237 -0.085  0.140   0.1013216013
 225  0.221 -0.294  0.544  0.247 -0.085  0.140   0.1011830177
 227  0.221 -0.294  0.544  0.252 -0.085  0.140   0.1011828275
 228  0.221 -0.294  0.544  0.250 -0.085  0.140   0.1011767927
 238  0.221 -0.294  0.544  0.250 -0.103  0.140   0.1008218233
 240  0.221 -0.294  0.544  0.250 -0.106  0.140   0.1008211114
 242  0.221 -0.294  0.544  0.250 -0.105  0.140   0.1008194853
 243  0.221 -0.294  0.544  0.250 -0.104  0.140   0.1008189931
 251  0.221 -0.294  0.544  0.250 -0.104  0.132   0.1007846386
 256  0.221 -0.294  0.544  0.250 -0.104  0.130   0.1007759856
 258  0.221 -0.294  0.544  0.250 -0.104  0.128   0.1007734132
 269  0.228 -0.294  0.544  0.250 -0.104  0.128   0.1007457872
 282  0.228 -0.293  0.544  0.250 -0.104  0.128   0.1007446679
 292  0.228 -0.293  0.536  0.250 -0.104  0.128   0.1007298160
 293  0.228 -0.293  0.538  0.250 -0.104  0.128   0.1007266778
 294  0.228 -0.293  0.539  0.250 -0.104  0.128   0.1007260098
 302  0.228 -0.293  0.539  0.251 -0.104  0.128   0.1007223722
 305  0.228 -0.293  0.539  0.252 -0.104  0.128   0.1007205440
 316  0.228 -0.293  0.539  0.252 -0.111  0.128   0.1006606708
 317  0.228 -0.293  0.539  0.252 -0.113  0.128   0.1006594634
 327  0.228 -0.293  0.539  0.252 -0.113  0.129   0.1006543381
 329  0.228 -0.293  0.539  0.252 -0.113  0.135   0.1006507076
 330  0.228 -0.293  0.539  0.252 -0.113  0.133   0.1006467025
 333  0.236 -0.292  0.533  0.254 -0.122  0.137   0.1005905133
 358  0.242 -0.292  0.533  0.254 -0.122  0.137   0.1005456170
 359  0.247 -0.292  0.533  0.254 -0.122  0.137   0.1005391218
 360  0.246 -0.292  0.533  0.254 -0.122  0.137   0.1005378932
 361  0.245 -0.292  0.533  0.254 -0.122  0.137   0.1005377609
 373  0.245 -0.294  0.533  0.254 -0.122  0.137   0.1005306639
 374  0.245 -0.295  0.533  0.254 -0.122  0.137   0.1005305569
 384  0.245 -0.295  0.532  0.254 -0.122  0.137   0.1005238598
 386  0.245 -0.295  0.529  0.254 -0.122  0.137   0.1005187322
 397  0.245 -0.295  0.529  0.255 -0.122  0.137   0.1005184084
 408  0.245 -0.295  0.529  0.255 -0.122  0.141   0.1005159489
 409  0.245 -0.295  0.529  0.255 -0.122  0.140   0.1005140750
 416  0.248 -0.295  0.527  0.256 -0.126  0.141   0.1005134793
 417  0.247 -0.295  0.527  0.255 -0.124  0.141   0.1005116193
 418  0.247 -0.295  0.528  0.255 -0.124  0.141   0.1005111861
 436  0.251 -0.295  0.528  0.255 -0.124  0.141   0.1005066919
 438  0.250 -0.295  0.528  0.255 -0.124  0.141   0.1005039711
 463  0.250 -0.295  0.526  0.255 -0.124  0.141   0.1005034930
 484  0.250 -0.295  0.526  0.255 -0.124  0.143   0.1005006065
 493  0.250 -0.295  0.526  0.255 -0.124  0.143   0.1005004948
 495  0.250 -0.295  0.526  0.255 -0.125  0.144   0.1004999950
 497  0.250 -0.295  0.526  0.255 -0.124  0.144   0.1004999226
 498  0.250 -0.295  0.526  0.255 -0.124  0.144   0.1004997324
 503  0.253 -0.295  0.525  0.255 -0.125  0.147   0.1004954103
 513  0.253 -0.295  0.525  0.255 -0.125  0.147   0.1004952829
 517  0.253 -0.295  0.525  0.255 -0.125  0.147   0.1004951331
 548  0.253 -0.293  0.525  0.255 -0.125  0.147   0.1004912325
 559  0.253 -0.293  0.526  0.255 -0.125  0.147   0.1004901419
 581  0.253 -0.293  0.526  0.255 -0.125  0.146   0.1004898660
 585  0.256 -0.293  0.524  0.256 -0.125  0.149   0.1004886170
 589  0.255 -0.293  0.525  0.255 -0.125  0.148   0.1004878207
 590  0.255 -0.293  0.525  0.255 -0.125  0.147   0.1004878069
 593  0.255 -0.293  0.525  0.255 -0.125  0.147   0.1004876630
Powell done niters = 6
Computing relative cost
 0  -25.0 -25.0 -25.0   1.035433
 1  -25.0 -25.0  25.0   1.043363
 2  -25.0  25.0 -25.0   1.029948
 3  -25.0  25.0  25.0   1.016018
 4   25.0 -25.0 -25.0   1.046063
 5   25.0 -25.0  25.0   1.009500
 6   25.0  25.0 -25.0   1.037092
 7   25.0  25.0  25.0   0.987505
REL:  8  0.100488    8.204921  1.025615 rel = 0.0979779 
Number of iterations     6
Min cost was 0.100488
Number of FunctionCalls   597
TolPowell 0.000100
nMaxItersPowell 36
OptimizationTime 1.956000 sec
Parameters at optimum (transmm)  0.25495 -0.29295  0.52496
Parameters at optimum (rotdeg)  0.25548 -0.12510  0.14742 
Final costs ----------------
Number of surface hits 2602
WM  Intensity    53.6288 +/-   7.8362
Ctx Intensity    66.6557 +/-   8.1514
Pct Contrast     21.7958 +/-  14.0694
Cost   0.1005
RelCost   0.1762
Reg at min cost was 
 0.998   0.036   0.044   0.598;
-0.039  -0.132   0.991  -0.147;
 0.041  -0.991  -0.130   0.151;
 0.000   0.000   0.000   1.000;

Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/bbr.pass1.dat, type = 14 
Original Reg 
 0.998   0.033   0.047   0.342;
-0.042  -0.136   0.990   0.143;
 0.039  -0.990  -0.135  -0.375;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
-0.000  -0.003   0.002  -0.255;
-0.002  -0.005  -0.001   0.290;
-0.002   0.001  -0.005  -0.526;
 0.000   0.000   0.000   0.000;

Computing change in lh position
LH rmsDiffMean 0.814749
Computing change in rh position
Surface RMS Diff (mm) 0.836312 1.067895
mri_segreg done
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 
sysname  Linux
hostname snake5
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/tmp.bbregister.16113/bbr.pass1.dat
subject sub008
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 1
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000000
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376182120
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.998   0.036   0.044   0.598;
-0.039  -0.132   0.991  -0.147;
 0.041  -0.991  -0.130   0.151;
 0.000   0.000   0.000   1.000;

Loading mov
Projecting LH Surfs
Loading lh.white surf
Loading lh.thickness for GM
GM Proj: 1 0.500000 2.000000
WM Proj: 0 0.500000 2.000000
Projecting RH Surfs
Loading rh.white surf
Loading rh.thickness
Projecting RH Surfs
Computing relative cost
 0  -25.0 -25.0 -25.0   1.019261
 1  -25.0 -25.0  25.0   0.999984
 2  -25.0  25.0 -25.0   1.014832
 3  -25.0  25.0  25.0   1.014843
 4   25.0 -25.0 -25.0   1.016792
 5   25.0 -25.0  25.0   1.014825
 6   25.0  25.0 -25.0   1.019809
 7   25.0  25.0  25.0   1.015596
REL:  8  0.105862    8.115943  1.014493 rel = 0.104349 
Initial costs ----------------
Number of surface hits 258785
WM  Intensity    53.7508 +/-   7.7774
Ctx Intensity    66.8362 +/-   8.3162
Pct Contrast     21.8125 +/-  13.8684
Cost   0.1059
RelCost   0.1043

------------------------------------
Brute force preopt -0.1 0.1 0.1, n = 729
     0  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000      0.1061   0.1061  0.0
    12  -0.1000  -0.1000  -0.1000   0.0000   0.0000  -0.1000      0.1057   0.1057  0.0
    19  -0.1000  -0.1000  -0.1000   0.1000  -0.1000   0.0000      0.1040   0.1040  0.0
    22  -0.1000  -0.1000  -0.1000   0.1000   0.0000   0.0000      0.1036   0.1036  0.0
    23  -0.1000  -0.1000  -0.1000   0.1000   0.0000   0.1000      0.1035   0.1035  0.0
   103  -0.1000   0.0000  -0.1000   0.1000   0.0000   0.0000      0.1025   0.1025  0.0
   104  -0.1000   0.0000  -0.1000   0.1000   0.0000   0.1000      0.1025   0.1025  0.0
   121  -0.1000   0.0000   0.0000   0.0000   0.0000   0.0000      0.1023   0.1023  0.0
   131  -0.1000   0.0000   0.0000   0.1000   0.0000   0.1000      0.1021   0.1021  0.0
   265   0.0000  -0.1000  -0.1000   0.1000   0.0000   0.0000      0.1019   0.1019  0.0
   301   0.0000  -0.1000   0.1000  -0.1000   0.0000   0.0000      0.1013   0.1013  0.0
   364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.1005   0.1005  0.0
Brute Force --------------------------
Min cost was 0.100488
Number of iterations   729
Search time 2.528000 sec
Parameters at best (transmm, rotdeg)
  0.000   0.000   0.000  0.000  0.000  0.000 
--------------------------------------------

Starting Powell Minimization
Init Powel Params dof = 6
0 0
1 0
2 0
3 0
4 0
5 0
   7 -0.092  0.000  0.000  0.000  0.000  0.000   0.1052676402
   8 -0.086  0.000  0.000  0.000  0.000  0.000   0.1052645921
   9 -0.085  0.000  0.000  0.000  0.000  0.000   0.1052645097
  17 -0.085  0.093  0.000  0.000  0.000  0.000   0.1043808859
  18 -0.085  0.089  0.000  0.000  0.000  0.000   0.1043659416
  19 -0.085  0.079  0.000  0.000  0.000  0.000   0.1043537347
  21 -0.085  0.078  0.000  0.000  0.000  0.000   0.1043535989
  22 -0.085  0.077  0.000  0.000  0.000  0.000   0.1043533976
  26 -0.085  0.075  0.000  0.000  0.000  0.000   0.1043532873
  34 -0.085  0.075 -0.082  0.000  0.000  0.000   0.1032545545
  35 -0.085  0.075 -0.136  0.000  0.000  0.000   0.1030244053
  37 -0.085  0.075 -0.131  0.000  0.000  0.000   0.1030235614
  38 -0.085  0.075 -0.133  0.000  0.000  0.000   0.1030231672
  47 -0.085  0.075 -0.133  0.019  0.000  0.000   0.1029599146
  49 -0.085  0.075 -0.133  0.018  0.000  0.000   0.1029597308
  58 -0.085  0.075 -0.133  0.018 -0.021  0.000   0.1029419898
  59 -0.085  0.075 -0.133  0.018 -0.014  0.000   0.1029339583
  68 -0.085  0.075 -0.133  0.018 -0.014  0.040   0.1028195266
  69 -0.085  0.075 -0.133  0.018 -0.014  0.036   0.1028179637
  70 -0.085  0.075 -0.133  0.018 -0.014  0.035   0.1028178283
  71 -0.085  0.075 -0.133  0.018 -0.014  0.034   0.1028177923
  81 -0.066  0.075 -0.133  0.018 -0.014  0.034   0.1027214980
  82 -0.048  0.075 -0.133  0.018 -0.014  0.034   0.1026985822
  83 -0.050  0.075 -0.133  0.018 -0.014  0.034   0.1026977020
  84 -0.051  0.075 -0.133  0.018 -0.014  0.034   0.1026976752
  92 -0.051  0.091 -0.133  0.018 -0.014  0.034   0.1026700398
  94 -0.051  0.092 -0.133  0.018 -0.014  0.034   0.1026700093
 104 -0.051  0.092 -0.161  0.018 -0.014  0.034   0.1026565543
 105 -0.051  0.092 -0.149  0.018 -0.014  0.034   0.1026404233
 115 -0.051  0.092 -0.149  0.034 -0.014  0.034   0.1025981618
 125 -0.051  0.092 -0.149  0.034 -0.019  0.034   0.1025933818
 126 -0.051  0.092 -0.149  0.034 -0.020  0.034   0.1025933018
 134 -0.051  0.092 -0.149  0.034 -0.020  0.057   0.1025716006
 135 -0.051  0.092 -0.149  0.034 -0.020  0.051   0.1025659447
 136 -0.051  0.092 -0.149  0.034 -0.020  0.049   0.1025657390
 138 -0.017  0.109 -0.166  0.051 -0.026  0.065   0.1025240716
 144 -0.030  0.103 -0.160  0.045 -0.024  0.059   0.1025096323
 145 -0.028  0.104 -0.161  0.046 -0.024  0.060   0.1025091980
 146 -0.028  0.104 -0.161  0.046 -0.024  0.060   0.1025091934
 148 -0.029  0.103 -0.160  0.045 -0.024  0.060   0.1025091906
 149 -0.029  0.104 -0.161  0.045 -0.024  0.060   0.1025091016
 161 -0.029  0.104 -0.161  0.045 -0.024  0.068   0.1025084846
 162 -0.029  0.104 -0.161  0.045 -0.024  0.064   0.1025073721
 172 -0.029  0.100 -0.161  0.045 -0.024  0.065   0.1025055124
 173 -0.029  0.099 -0.161  0.045 -0.024  0.065   0.1025053017
 182 -0.029  0.099 -0.179  0.045 -0.024  0.065   0.1024965315
 183 -0.029  0.099 -0.173  0.045 -0.024  0.065   0.1024921684
 184 -0.029  0.099 -0.172  0.045 -0.024  0.065   0.1024920430
 193 -0.029  0.099 -0.172  0.048 -0.024  0.065   0.1024911286
 197 -0.029  0.099 -0.172  0.049 -0.024  0.065   0.1024910644
 207 -0.029  0.099 -0.172  0.049 -0.023  0.065   0.1024906908
 215 -0.029  0.099 -0.171  0.049 -0.023  0.065   0.1024905916
 228 -0.029  0.099 -0.171  0.049 -0.023  0.063   0.1024905449
 237 -0.029  0.098 -0.171  0.049 -0.023  0.063   0.1024904760
 238 -0.029  0.097 -0.171  0.049 -0.023  0.063   0.1024904685
 249 -0.029  0.097 -0.175  0.049 -0.023  0.063   0.1024899707
 250 -0.029  0.097 -0.174  0.049 -0.023  0.063   0.1024898699
 259 -0.029  0.097 -0.174  0.050 -0.023  0.063   0.1024896709
 260 -0.029  0.097 -0.174  0.051 -0.023  0.063   0.1024896524
 279 -0.030  0.097 -0.174  0.051 -0.023  0.063   0.1024896300
 280 -0.030  0.097 -0.174  0.051 -0.023  0.063   0.1024896075
 291 -0.030  0.097 -0.174  0.051 -0.023  0.064   0.1024895649
 300 -0.030  0.098 -0.174  0.051 -0.023  0.064   0.1024894360
 310 -0.030  0.098 -0.176  0.051 -0.023  0.064   0.1024892280
 312 -0.030  0.098 -0.175  0.051 -0.023  0.064   0.1024891172
 321 -0.030  0.098 -0.175  0.052 -0.023  0.064   0.1024890729
 340 -0.030  0.098 -0.175  0.051 -0.022  0.064   0.1024890677
 341 -0.030  0.098 -0.175  0.052 -0.023  0.064   0.1024890363
 343 -0.030  0.098 -0.175  0.052 -0.023  0.064   0.1024890060
 375 -0.030  0.098 -0.176  0.052 -0.023  0.064   0.1024889232
Powell done niters = 6
Computing relative cost
 0  -25.0 -25.0 -25.0   1.019707
 1  -25.0 -25.0  25.0   0.999204
 2  -25.0  25.0 -25.0   1.015500
 3  -25.0  25.0  25.0   1.016825
 4   25.0 -25.0 -25.0   1.016621
 5   25.0 -25.0  25.0   1.014557
 6   25.0  25.0 -25.0   1.018232
 7   25.0  25.0  25.0   1.014331
REL:  8  0.102489    8.114977  1.014372 rel = 0.101037 
Number of iterations     6
Min cost was 0.102489
Number of FunctionCalls   465
TolPowell 0.000000
nMaxItersPowell 36
OptimizationTime 59.014000 sec
Parameters at optimum (transmm) -0.03010  0.09769 -0.17621
Parameters at optimum (rotdeg)  0.05157 -0.02253  0.06379 
Final costs ----------------
Number of surface hits 258785
WM  Intensity    53.7752 +/-   7.8002
Ctx Intensity    66.8330 +/-   8.3074
Pct Contrast     21.7681 +/-  13.8176
Cost   0.1025
RelCost   0.1043
Reg at min cost was 
 0.998   0.036   0.043   0.568;
-0.038  -0.131   0.991  -0.049;
 0.042  -0.991  -0.129  -0.025;
 0.000   0.000   0.000   1.000;

Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.dat, type = 14 
Original Reg 
 0.998   0.036   0.044   0.598;
-0.039  -0.132   0.991  -0.147;
 0.041  -0.991  -0.130   0.151;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
-0.000  -0.001   0.001   0.030;
-0.001  -0.001  -0.000  -0.098;
-0.000   0.000  -0.001   0.176;
 0.000   0.000   0.000   0.000;

Computing change in lh position
LH rmsDiffMean 0.187625
Computing change in rh position
Surface RMS Diff (mm) 0.192733 0.239415
mri_segreg done
tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.dat --noedit --ltaout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.lta
tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
INFO: no target volume specified, assuming FreeSurfer orig volume.
target  volume orig
movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/orig/T2raw.mgz
reg file       /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.dat
LoadVol        0
ZeroCRAS       0
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
Diagnostic Level -1
---- Input registration matrix --------
 0.998   0.036   0.043   0.568;
-0.038  -0.131   0.991  -0.049;
 0.042  -0.991  -0.129  -0.025;
 0.000   0.000   0.000   1.000;
float2int = 0
---------------------------------------
INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/orig.mgz
Ttarg: --------------------
-1.000   0.000   0.000   128.000;
 0.000   0.000   1.000  -128.000;
 0.000  -1.000   0.000   128.000;
 0.000   0.000   0.000   1.000;
INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/orig/T2raw.mgz
Tmov: --------------------
-0.700   0.000   0.000   95.883;
 0.000   0.000   0.667  -128.000;
 0.000  -0.667   0.000   128.000;
 0.000   0.000   0.000   1.000;
mkheaderreg = 0, float2int = 0
---- Input registration matrix --------
 0.998   0.036   0.043   0.568;
-0.038  -0.131   0.991  -0.049;
 0.042  -0.991  -0.129  -0.025;
 0.000   0.000   0.000   1.000;
Determinant 0.999999
subject = sub008
RegMat ---------------------------
 0.998   0.036   0.043   0.568;
-0.038  -0.131   0.991  -0.049;
 0.042  -0.991  -0.129  -0.025;
 0.000   0.000   0.000   1.000;
transformed matrix:
 1.000  -0.012  -0.002  -0.253;
 0.012   1.000   0.008   0.255;
 0.002  -0.008   1.000   0.285;
 0.000   0.000   0.000   1.000;
transformed matrix:
 0.699   0.028   0.025   22.617;
 0.030  -0.086  -0.660   267.159;
-0.025   0.661  -0.087   21.342;
 0.000   0.000   0.000   1.000;
Cleaning up
 
Started at Thu Aug 8 22:52:57 CEST 2013 
Ended   at Thu Aug  8 23:06:16 CEST 2013
BBR-Run-Time-Sec 799
 
bbregister Done
To check results, run:
tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub008/mri/transforms/T2raw.dat --surf