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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub006 --surf-wm-vol --ctab /opt/freesurfer/5.3.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake5
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub006
    14. 

  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 277850.585369, mm^3
    15. 

  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 278985.206326, mm^3
    16. 

  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 556835.791695, mm^3
    17. 

  17. # Measure Mask, MaskVol, Mask Volume, 1955327.000000, mm^3
    18. 

  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1428534.252470, mm^3
    19. 

  19. # SegVolFile mri/wmparc.mgz 
    20. 

  20. # SegVolFileTimeStamp  2013/08/09 01:14:01 
    21. 

  21. # ColorTable /opt/freesurfer/5.3.0/WMParcStatsLUT.txt 
    22. 

  22. # ColorTableTimeStamp 2013/05/13 23:21:15 
    23. 

  23. # InVolFile  mri/norm.mgz 
    24. 

  24. # InVolFileTimeStamp  2013/08/08 12:13:31 
    25. 

  25. # InVolFrame 0 
    26. 

  26. # PVVolFile  mri/norm.mgz 
    27. 

  27. # PVVolFileTimeStamp  2013/08/08 12:13:31 
    28. 

  28. # ExcludeSegId 0 
    29. 

  29. # Only reporting non-empty segmentations
    30. 

  30. # VoxelVolume_mm3 1 
    31. 

  31. # TableCol  1 ColHeader Index 
    32. 

  32. # TableCol  1 FieldName Index 
    33. 

  33. # TableCol  1 Units     NA 
    34. 

  34. # TableCol  2 ColHeader SegId 
    35. 

  35. # TableCol  2 FieldName Segmentation Id
    36. 

  36. # TableCol  2 Units     NA
    37. 

  37. # TableCol  3 ColHeader NVoxels 
    38. 

  38. # TableCol  3 FieldName Number of Voxels
    39. 

  39. # TableCol  3 Units     unitless
    40. 

  40. # TableCol  4 ColHeader Volume_mm3
    41. 

  41. # TableCol  4 FieldName Volume
    42. 

  42. # TableCol  4 Units     mm^3
    43. 

  43. # TableCol  5 ColHeader StructName
    44. 

  44. # TableCol  5 FieldName Structure Name
    45. 

  45. # TableCol  5 Units     NA
    46. 

  46. # TableCol  6 ColHeader normMean 
    47. 

  47. # TableCol  6 FieldName Intensity normMean
    48. 

  48. # TableCol  6 Units     MR
    49. 

  49. # TableCol  7 ColHeader normStdDev
    50. 

  50. # TableCol  7 FieldName Itensity normStdDev
    51. 

  51. # TableCol  7 Units     MR
    52. 

  52. # TableCol  8 ColHeader normMin
    53. 

  53. # TableCol  8 FieldName Intensity normMin
    54. 

  54. # TableCol  8 Units     MR
    55. 

  55. # TableCol  9 ColHeader normMax
    56. 

  56. # TableCol  9 FieldName Intensity normMax
    57. 

  57. # TableCol  9 Units     MR
    58. 

  58. # TableCol 10 ColHeader normRange
    59. 

  59. # TableCol 10 FieldName Intensity normRange
    60. 

  60. # TableCol 10 Units     MR
    61. 

  61. # NRows 70 
    62. 

  62. # NTableCols 10 
    63. 

  63. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    64. 

  64.   1 3001      4418     4417.7  wm-lh-bankssts                   104.7600     9.7134    61.0000   125.0000    64.0000 
    65. 

  65.   2 3002      3864     3864.3  wm-lh-caudalanteriorcingulate    100.2814     9.3284    38.0000   117.0000    79.0000 
    66. 

  66.   3 3003      7755     7755.1  wm-lh-caudalmiddlefrontal         96.4027    10.4689    32.0000   117.0000    85.0000 
    67. 

  67.   4 3005      2922     2922.2  wm-lh-cuneus                     100.4866     9.6139    68.0000   117.0000    49.0000 
    68. 

  68.   5 3006       866      865.7  wm-lh-entorhinal                  87.7253     9.5666    61.0000   111.0000    50.0000 
    69. 

  69.   6 3007      7879     7879.2  wm-lh-fusiform                    99.0408     9.9735    55.0000   124.0000    69.0000 
    70. 

  70.   7 3008     13874    13874.4  wm-lh-inferiorparietal           105.2167    10.6511    39.0000   126.0000    87.0000 
    71. 

  71.   8 3009      8577     8576.7  wm-lh-inferiortemporal            95.6159    12.3872    57.0000   121.0000    64.0000 
    72. 

  72.   9 3010      5079     5079.1  wm-lh-isthmuscingulate           102.9565     9.8433     9.0000   124.0000   115.0000 
    73. 

  73.  10 3011     11434    11433.7  wm-lh-lateraloccipital           100.0518     9.9887    63.0000   120.0000    57.0000 
    74. 

  74.  11 3012      7590     7590.0  wm-lh-lateralorbitofrontal        99.8727    10.7421    51.0000   124.0000    73.0000 
    75. 

  75.  12 3013      5167     5166.9  wm-lh-lingual                     93.0327    11.2243    43.0000   123.0000    80.0000 
    76. 

  76.  13 3014      4050     4049.5  wm-lh-medialorbitofrontal         92.5652    14.0774    22.0000   119.0000    97.0000 
    77. 

  77.  14 3015      6849     6848.8  wm-lh-middletemporal              92.7747    12.7756    56.0000   123.0000    67.0000 
    78. 

  78.  15 3016      1745     1745.5  wm-lh-parahippocampal             97.2020     8.8590    61.0000   118.0000    57.0000 
    79. 

  79.  16 3017      4994     4993.9  wm-lh-paracentral                100.6598     8.9702    62.0000   120.0000    58.0000 
    80. 

  80.  17 3018      5347     5347.1  wm-lh-parsopercularis             97.4562     9.5681    64.0000   114.0000    50.0000 
    81. 

  81.  18 3019      1058     1058.1  wm-lh-parsorbitalis               98.8961    11.9671    67.0000   124.0000    57.0000 
    82. 

  82.  19 3020      3877     3877.0  wm-lh-parstriangularis           100.7395     9.7251    67.0000   120.0000    53.0000 
    83. 

  83.  20 3021      3776     3775.7  wm-lh-pericalcarine               98.3164    10.4918    12.0000   122.0000   110.0000 
    84. 

  84.  21 3022      9375     9375.5  wm-lh-postcentral                 97.2288    10.3681    68.0000   127.0000    59.0000 
    85. 

  85.  22 3023      5697     5696.5  wm-lh-posteriorcingulate         103.8644    10.1827    39.0000   124.0000    85.0000 
    86. 

  86.  23 3024     15315    15314.8  wm-lh-precentral                  98.7648     9.4631    65.0000   120.0000    55.0000 
    87. 

  87.  24 3025     12411    12410.5  wm-lh-precuneus                  104.6628     9.5357    30.0000   126.0000    96.0000 
    88. 

  88.  25 3026      3254     3253.8  wm-lh-rostralanteriorcingulate    99.1618    11.4535    44.0000   118.0000    74.0000 
    89. 

  89.  26 3027     14948    14948.4  wm-lh-rostralmiddlefrontal        98.9710    11.2209    60.0000   122.0000    62.0000 
    90. 

  90.  27 3028     24509    24508.7  wm-lh-superiorfrontal             93.8053    11.3462    41.0000   117.0000    76.0000 
    91. 

  91.  28 3029     14397    14396.7  wm-lh-superiorparietal           104.3736     9.5371    67.0000   126.0000    59.0000 
    92. 

  92.  29 3030      8630     8630.1  wm-lh-superiortemporal            97.2890    11.6870    63.0000   124.0000    61.0000 
    93. 

  93.  30 3031     12144    12143.6  wm-lh-supramarginal              103.2474    12.1505    65.0000   126.0000    61.0000 
    94. 

  94.  31 3032       242      241.9  wm-lh-frontalpole                 90.5760    10.9550    65.0000   116.0000    51.0000 
    95. 

  95.  32 3033       663      663.0  wm-lh-temporalpole                86.5502     9.4419    62.0000   106.0000    44.0000 
    96. 

  96.  33 3034       896      895.9  wm-lh-transversetemporal         101.8448     8.4496    80.0000   121.0000    41.0000 
    97. 

  97.  34 3035     11996    11995.9  wm-lh-insula                      98.8114    11.9913    43.0000   123.0000    80.0000 
    98. 

  98.  35 4001      3372     3371.9  wm-rh-bankssts                   103.2142     8.3546    70.0000   123.0000    53.0000 
    99. 

  99.  36 4002      3721     3721.0  wm-rh-caudalanteriorcingulate     99.2318    10.0363    41.0000   117.0000    76.0000 
    100. 

  100.  37 4003      7093     7092.9  wm-rh-caudalmiddlefrontal         94.9580    10.6789    29.0000   113.0000    84.0000 
    101. 

  101.  38 4005      2876     2875.5  wm-rh-cuneus                     101.8879     9.8902    66.0000   125.0000    59.0000 
    102. 

  102.  39 4006       742      741.8  wm-rh-entorhinal                  86.3440     9.3290    59.0000   111.0000    52.0000 
    103. 

  103.  40 4007      8916     8916.2  wm-rh-fusiform                    95.5859    10.3732    57.0000   120.0000    63.0000 
    104. 

  104.  41 4008     16859    16858.6  wm-rh-inferiorparietal           103.3580    10.2197    57.0000   123.0000    66.0000 
    105. 

  105.  42 4009      6662     6662.3  wm-rh-inferiortemporal            91.4494    11.0898    46.0000   116.0000    70.0000 
    106. 

  106.  43 4010      3680     3679.8  wm-rh-isthmuscingulate           101.8216     9.6627    27.0000   122.0000    95.0000 
    107. 

  107.  44 4011     11668    11668.0  wm-rh-lateraloccipital            99.9534     9.4746    66.0000   124.0000    58.0000 
    108. 

  108.  45 4012      8058     8058.5  wm-rh-lateralorbitofrontal       100.5214    12.0787    23.0000   123.0000   100.0000 
    109. 

  109.  46 4013      5615     5615.3  wm-rh-lingual                     94.2726    10.3257    16.0000   121.0000   105.0000 
    110. 

  110.  47 4014      4398     4398.3  wm-rh-medialorbitofrontal         99.3087    11.1543    62.0000   122.0000    60.0000 
    111. 

  111.  48 4015      7127     7127.3  wm-rh-middletemporal              94.7637    11.3155    57.0000   122.0000    65.0000 
    112. 

  112.  49 4016      1785     1785.2  wm-rh-parahippocampal             92.3973    10.0884    32.0000   120.0000    88.0000 
    113. 

  113.  50 4017      7082     7082.1  wm-rh-paracentral                101.3529     9.3363    56.0000   122.0000    66.0000 
    114. 

  114.  51 4018      3396     3396.4  wm-rh-parsopercularis             96.7265     9.1148    66.0000   115.0000    49.0000 
    115. 

  115.  52 4019      1044     1044.2  wm-rh-parsorbitalis               96.1082    11.3832    64.0000   119.0000    55.0000 
    116. 

  116.  53 4020      4546     4545.8  wm-rh-parstriangularis           100.6926     9.8584    66.0000   122.0000    56.0000 
    117. 

  117.  54 4021      4072     4071.6  wm-rh-pericalcarine               99.3417     8.7914    44.0000   120.0000    76.0000 
    118. 

  118.  55 4022      9982     9982.4  wm-rh-postcentral                 96.4951     9.7888    62.0000   122.0000    60.0000 
    119. 

  119.  56 4023      5548     5548.2  wm-rh-posteriorcingulate         103.2420     9.8664    39.0000   132.0000    93.0000 
    120. 

  120.  57 4024     17896    17895.9  wm-rh-precentral                  97.1206     9.2242    34.0000   117.0000    83.0000 
    121. 

  121.  58 4025     12276    12276.5  wm-rh-precuneus                  104.1347     8.8318    45.0000   121.0000    76.0000 
    122. 

  122.  59 4026      2472     2471.5  wm-rh-rostralanteriorcingulate    98.5331    12.8344    29.0000   121.0000    92.0000 
    123. 

  123.  60 4027     17153    17153.1  wm-rh-rostralmiddlefrontal        97.5372    10.8785    33.0000   124.0000    91.0000 
    124. 

  124.  61 4028     22915    22914.8  wm-rh-superiorfrontal             95.1043    10.8468    54.0000   119.0000    65.0000 
    125. 

  125.  62 4029     13379    13379.1  wm-rh-superiorparietal           102.7511     9.8567    50.0000   122.0000    72.0000 
    126. 

  126.  63 4030      8384     8383.7  wm-rh-superiortemporal            95.3678    10.7184    60.0000   122.0000    62.0000 
    127. 

  127.  64 4031     10440    10439.9  wm-rh-supramarginal              102.5479    10.8829    64.0000   123.0000    59.0000 
    128. 

  128.  65 4032       371      370.8  wm-rh-frontalpole                 90.0650    11.0058    65.0000   112.0000    47.0000 
    129. 

  129.  66 4033       824      823.7  wm-rh-temporalpole                85.5210    10.8363    57.0000   109.0000    52.0000 
    130. 

  130.  67 4034       747      746.8  wm-rh-transversetemporal         101.1299     8.0275    75.0000   117.0000    42.0000 
    131. 

  131.  68 4035     10663    10662.8  wm-rh-insula                      95.0020    11.4935    45.0000   127.0000    82.0000 
    132. 

  132.  69 5001     35030    35030.4  Left-UnsegmentedWhiteMatter      104.2339    10.5598     9.0000   126.0000   117.0000 
    133. 

  133.  70 5002     35614    35613.6  Right-UnsegmentedWhiteMatter     102.5315     9.8721     3.0000   125.0000   122.0000 
    134.