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- Logfile for bbregister
- Thu Aug 8 23:20:09 CEST 2013
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/scripts
- /opt/freesurfer/5.3.0/bin/bbregister --s sub006 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/orig/T2raw.mgz --lta /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/T2raw.lta --init-fsl --T2
- $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $
- Linux snake5 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
- FREESURFER_HOME /opt/freesurfer/5.3.0
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/orig/T2raw.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/orig/T2raw.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-0.998757, 0.0408089, 0.02861)
- j_ras = (0.0441177, 0.99097, 0.126615)
- k_ras = (0.0231846, -0.12772, 0.991539)
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii...
- fslregister --s sub006 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister --dof 6 --fsvol brainmask.mgz
- Log file is /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/reg.init.dat.fslregister.log
- Thu Aug 8 23:20:14 CEST 2013
- --s sub006 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister --dof 6 --fsvol brainmask.mgz
- $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $
- snake5
- Linux snake5 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
- nIters 1
- --------------------------------------
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/scripts
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/refvol.fslregister.nii
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/brainmask.mgz /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/refvol.fslregister.nii
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/brainmask.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, -1.16415e-09, 1.86265e-09)
- j_ras = (-1.86265e-09, 1.49012e-08, -1)
- k_ras = (9.31323e-10, 1, -1.49012e-08)
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/refvol.fslregister.nii...
- --------------------------------------
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/scripts
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/movvol.fslregister.nii --frame 0
- mri_convert /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/movvol.fslregister.nii --frame 0
- $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
- reading from /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-0.998757, 0.0408089, 0.02861)
- j_ras = (0.0441177, 0.99097, 0.126615)
- k_ras = (0.0231846, -0.12772, 0.991539)
- keeping frame 0
- writing to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/movvol.fslregister.nii...
- Mov determinant is -0.311076
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/scripts
- tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/movvol.fslregister.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/reg0.19186.dat --regheader --fslregout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/reg.init.dat.fsl.mat0 --s sub006 --noedit
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/movvol.fslregister.nii
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/reg0.19186.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/movvol.fslregister.nii
- Tmov: --------------------
- -0.700 0.000 0.000 95.889;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 1, float2int = 0
- Computing reg from header (and possibly input matrix)
- ---- Input registration matrix (computed) --------
- 0.999 -0.041 -0.029 -0.000;
- 0.023 -0.128 0.992 -0.000;
- -0.044 -0.991 -0.127 0.000;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- ---- Input registration matrix --------
- 0.999 -0.041 -0.029 -0.000;
- 0.023 -0.128 0.992 -0.000;
- -0.044 -0.991 -0.127 0.000;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub006
- RegMat ---------------------------
- 0.999 -0.041 -0.029 -0.000;
- 0.023 -0.128 0.992 -0.000;
- -0.044 -0.991 -0.127 0.000;
- 0.000 0.000 0.000 1.000;
- FSLOUTPUTTYPE NIFTI
- tkreg2FSL: mov det = -0.311076, ref det = -1
- Thu Aug 8 23:20:22 CEST 2013
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/scripts
- flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/fslmat0.trans.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/reg.init.dat.fsl.mat0
- Thu Aug 8 23:24:44 CEST 2013
- /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/scripts
- flirt.fsl -ref /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/refvol.fslregister.nii -in /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/reg.init.dat.fsl.mat -init /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/5.3.0/bin/flirt.newdefault.20080811.sch
- tkregister2_cmdl --s sub006 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/reg.init.dat --fslreg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/reg.init.dat.fsl.mat --noedit
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- ---- FSL registration matrix --------
- 0.999 -0.042 -0.020 40.136;
- -0.025 -0.120 -0.992 274.192;
- 0.039 0.992 -0.121 12.050;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/reg.init.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii
- Tmov: --------------------
- -0.700 0.000 0.000 95.889;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 0, float2int = 0
- FSLOUTPUTTYPE NIFTI
- fsl2TkReg: mov det = -0.311076, ref det = -1
- ---- Input registration matrix (computed) --------
- 0.999 -0.039 -0.025 0.009;
- 0.020 -0.121 0.992 1.308;
- -0.042 -0.992 -0.120 -0.930;
- 0.000 0.000 0.000 1.000;
- ---------------------------------------
- ---- Input registration matrix --------
- 0.999 -0.039 -0.025 0.009;
- 0.020 -0.121 0.992 1.308;
- -0.042 -0.992 -0.120 -0.930;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub006
- RegMat ---------------------------
- 0.999 -0.039 -0.025 0.009;
- 0.020 -0.121 0.992 1.308;
- -0.042 -0.992 -0.120 -0.930;
- 0.000 0.000 0.000 1.000;
-
- Started at Thu Aug 8 23:20:14 CEST 2013
- Ended at Thu Aug 8 23:31:25 CEST 2013
-
- fslregister Done
-
- To check results, run:
- tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/reg.init.dat --surf orig
-
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/reg.init.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5
- sysname Linux
- hostname snake5
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/reg.init.dat
- subject sub006
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/bbr.pass1.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 100
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000100
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376052073
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.999 -0.039 -0.025 0.009;
- 0.020 -0.121 0.992 1.308;
- -0.042 -0.992 -0.120 -0.930;
- 0.000 0.000 0.000 1.000;
- Loading mov
- Projecting LH Surfs
- Loading lh.white surf
- Loading lh.thickness for GM
- GM Proj: 1 0.500000 2.000000
- WM Proj: 0 0.500000 2.000000
- Projecting RH Surfs
- Loading rh.white surf
- Loading rh.thickness
- Projecting RH Surfs
- Computing relative cost
- 0 -25.0 -25.0 -25.0 0.990036
- 1 -25.0 -25.0 25.0 1.013869
- 2 -25.0 25.0 -25.0 1.045360
- 3 -25.0 25.0 25.0 1.003149
- 4 25.0 -25.0 -25.0 1.023281
- 5 25.0 -25.0 25.0 1.006686
- 6 25.0 25.0 -25.0 1.010024
- 7 25.0 25.0 25.0 1.048604
- REL: 8 0.322576 8.141011 1.017626 rel = 0.316989
- Initial costs ----------------
- Number of surface hits 3238
- WM Intensity 61.7561 +/- 11.7398
- Ctx Intensity 77.7046 +/- 15.1309
- Pct Contrast 22.3549 +/- 23.0208
- Cost 0.3226
- RelCost 0.3170
- ------------------------------------
- Brute force preopt -4 4 4, n = 729
- 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9854 0.9854 0.0
- 1 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 0.9791 0.9791 0.0
- 3 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 -4.0000 0.9606 0.9606 0.0
- 6 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 -4.0000 0.9556 0.9556 0.0
- 15 -4.0000 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.8671 0.8671 0.0
- 21 -4.0000 -4.0000 -4.0000 4.0000 0.0000 -4.0000 0.8189 0.8189 0.0
- 39 -4.0000 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.7643 0.7643 0.0
- 120 -4.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.6566 0.6566 0.0
- 283 0.0000 -4.0000 0.0000 0.0000 0.0000 0.0000 0.6078 0.6078 0.0
- 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3226 0.3226 0.0
- Brute Force --------------------------
- Min cost was 0.322576
- Number of iterations 729
- Search time 2.528000 sec
- Parameters at best (transmm, rotdeg)
- 0.000 0.000 0.000 0.000 0.000 0.000
- --------------------------------------------
- Starting Powell Minimization
- Init Powel Params dof = 6
- 0 0
- 1 0
- 2 0
- 3 0
- 4 0
- 5 0
- 10 -0.006 0.000 0.000 0.000 0.000 0.000 0.3225513539
- 11 -0.005 0.000 0.000 0.000 0.000 0.000 0.3225499366
- 15 -0.005 -1.618 0.000 0.000 0.000 0.000 0.1223710691
- 20 -0.005 -1.431 0.000 0.000 0.000 0.000 0.1196453081
- 21 -0.005 -1.460 0.000 0.000 0.000 0.000 0.1190840389
- 22 -0.005 -1.491 0.000 0.000 0.000 0.000 0.1184857389
- 24 -0.005 -1.500 0.000 0.000 0.000 0.000 0.1184697786
- 25 -0.005 -1.498 0.000 0.000 0.000 0.000 0.1184583008
- 26 -0.005 -1.496 0.000 0.000 0.000 0.000 0.1184563610
- 29 -0.005 -1.496 1.000 0.000 0.000 0.000 0.1170204377
- 33 -0.005 -1.496 0.618 0.000 0.000 0.000 0.0877717013
- 35 -0.005 -1.496 0.524 0.000 0.000 0.000 0.0860064007
- 36 -0.005 -1.496 0.509 0.000 0.000 0.000 0.0859274583
- 38 -0.005 -1.496 0.507 0.000 0.000 0.000 0.0859264095
- 48 -0.005 -1.496 0.507 -0.064 0.000 0.000 0.0855856668
- 49 -0.005 -1.496 0.507 -0.038 0.000 0.000 0.0849571324
- 59 -0.005 -1.496 0.507 -0.038 -0.082 0.000 0.0845974589
- 60 -0.005 -1.496 0.507 -0.038 -0.052 0.000 0.0843965611
- 61 -0.005 -1.496 0.507 -0.038 -0.051 0.000 0.0843894536
- 62 -0.005 -1.496 0.507 -0.038 -0.032 0.000 0.0843761775
- 63 -0.005 -1.496 0.507 -0.038 -0.040 0.000 0.0843609554
- 64 -0.005 -1.496 0.507 -0.038 -0.039 0.000 0.0843584762
- 65 -0.005 -1.496 0.507 -0.038 -0.037 0.000 0.0843576955
- 74 -0.005 -1.496 0.507 -0.038 -0.037 0.119 0.0818356881
- 76 -0.005 -1.496 0.507 -0.038 -0.037 0.104 0.0817269000
- 79 -0.005 -1.496 0.507 -0.038 -0.037 0.098 0.0817165227
- 89 0.062 -1.496 0.507 -0.038 -0.037 0.098 0.0784200867
- 91 0.079 -1.496 0.507 -0.038 -0.037 0.098 0.0783580601
- 92 0.076 -1.496 0.507 -0.038 -0.037 0.098 0.0783375078
- 93 0.074 -1.496 0.507 -0.038 -0.037 0.098 0.0783332821
- 102 0.074 -1.500 0.507 -0.038 -0.037 0.098 0.0782613848
- 104 0.074 -1.532 0.507 -0.038 -0.037 0.098 0.0782124181
- 105 0.074 -1.518 0.507 -0.038 -0.037 0.098 0.0781260750
- 106 0.074 -1.519 0.507 -0.038 -0.037 0.098 0.0781256759
- 114 0.074 -1.519 0.518 -0.038 -0.037 0.098 0.0780031421
- 116 0.074 -1.519 0.528 -0.038 -0.037 0.098 0.0779685306
- 117 0.074 -1.519 0.530 -0.038 -0.037 0.098 0.0779660198
- 128 0.074 -1.519 0.530 -0.079 -0.037 0.098 0.0775032375
- 129 0.074 -1.519 0.530 -0.070 -0.037 0.098 0.0773934281
- 130 0.074 -1.519 0.530 -0.066 -0.037 0.098 0.0773850494
- 140 0.074 -1.519 0.530 -0.066 -0.045 0.098 0.0772513331
- 142 0.074 -1.519 0.530 -0.066 -0.049 0.098 0.0772355263
- 151 0.074 -1.519 0.530 -0.066 -0.049 0.153 0.0768815185
- 152 0.074 -1.519 0.530 -0.066 -0.049 0.144 0.0767667536
- 153 0.074 -1.519 0.530 -0.066 -0.049 0.133 0.0767352155
- 154 0.074 -1.519 0.530 -0.066 -0.049 0.136 0.0767350124
- 156 0.074 -1.519 0.530 -0.066 -0.049 0.135 0.0767345098
- 157 0.153 -1.542 0.554 -0.094 -0.061 0.171 0.0757315281
- 165 0.156 -1.543 0.555 -0.096 -0.062 0.173 0.0757278872
- 166 0.160 -1.544 0.556 -0.097 -0.062 0.175 0.0757259927
- 169 0.160 -1.544 0.556 -0.097 -0.062 0.175 0.0757256658
- 177 0.160 -1.544 0.556 -0.097 -0.062 0.204 0.0755171844
- 179 0.160 -1.544 0.556 -0.097 -0.062 0.196 0.0755028243
- 181 0.160 -1.544 0.556 -0.097 -0.062 0.199 0.0754996383
- 190 0.160 -1.513 0.556 -0.097 -0.062 0.199 0.0746624075
- 191 0.160 -1.464 0.556 -0.097 -0.062 0.199 0.0746055559
- 193 0.160 -1.487 0.556 -0.097 -0.062 0.199 0.0744588357
- 195 0.160 -1.489 0.556 -0.097 -0.062 0.199 0.0744576947
- 206 0.160 -1.489 0.566 -0.097 -0.062 0.199 0.0743555643
- 207 0.160 -1.489 0.571 -0.097 -0.062 0.199 0.0743416053
- 219 0.160 -1.489 0.571 -0.102 -0.062 0.199 0.0743244867
- 229 0.160 -1.489 0.571 -0.102 -0.054 0.199 0.0742840259
- 232 0.160 -1.489 0.571 -0.102 -0.055 0.199 0.0742834399
- 239 0.190 -1.498 0.580 -0.112 -0.059 0.213 0.0741403009
- 242 0.209 -1.503 0.586 -0.119 -0.062 0.221 0.0741398050
- 244 0.209 -1.503 0.586 -0.119 -0.062 0.221 0.0741395840
- 247 0.211 -1.504 0.586 -0.120 -0.063 0.222 0.0741395027
- 248 0.210 -1.503 0.586 -0.120 -0.062 0.222 0.0741393948
- 249 0.210 -1.503 0.586 -0.120 -0.062 0.222 0.0741393463
- 259 0.210 -1.503 0.586 -0.120 -0.062 0.233 0.0738855742
- 261 0.210 -1.503 0.586 -0.120 -0.062 0.248 0.0737759217
- 262 0.210 -1.503 0.586 -0.120 -0.062 0.246 0.0737721810
- 273 0.210 -1.490 0.586 -0.120 -0.062 0.246 0.0736963995
- 285 0.210 -1.490 0.587 -0.120 -0.062 0.246 0.0736915133
- 286 0.210 -1.490 0.592 -0.120 -0.062 0.246 0.0736834938
- 288 0.210 -1.490 0.591 -0.120 -0.062 0.246 0.0736833623
- 298 0.210 -1.490 0.591 -0.111 -0.062 0.246 0.0735968226
- 300 0.210 -1.490 0.591 -0.107 -0.062 0.246 0.0735963327
- 302 0.210 -1.490 0.591 -0.108 -0.062 0.246 0.0735944569
- 303 0.210 -1.490 0.591 -0.109 -0.062 0.246 0.0735940538
- 311 0.210 -1.490 0.591 -0.109 -0.070 0.246 0.0735228430
- 312 0.210 -1.490 0.591 -0.109 -0.074 0.246 0.0735080376
- 315 0.210 -1.490 0.591 -0.109 -0.075 0.246 0.0735077031
- 321 0.240 -1.498 0.599 -0.120 -0.080 0.260 0.0734949468
- 322 0.226 -1.494 0.595 -0.115 -0.078 0.254 0.0734300529
- 324 0.228 -1.495 0.596 -0.116 -0.078 0.255 0.0734286940
- 327 0.228 -1.495 0.596 -0.116 -0.078 0.255 0.0734286205
- 338 0.228 -1.495 0.596 -0.116 -0.078 0.253 0.0734281123
- 348 0.228 -1.479 0.596 -0.116 -0.078 0.253 0.0734006223
- 349 0.228 -1.482 0.596 -0.116 -0.078 0.253 0.0733844990
- 350 0.228 -1.486 0.596 -0.116 -0.078 0.253 0.0733790100
- 362 0.228 -1.486 0.592 -0.116 -0.078 0.253 0.0733697099
- 364 0.228 -1.486 0.593 -0.116 -0.078 0.253 0.0733696556
- 374 0.228 -1.486 0.593 -0.110 -0.078 0.253 0.0733206040
- 376 0.228 -1.486 0.593 -0.105 -0.078 0.253 0.0733125478
- 377 0.228 -1.486 0.593 -0.107 -0.078 0.253 0.0733110118
- 387 0.228 -1.486 0.593 -0.107 -0.083 0.253 0.0732951888
- 396 0.232 -1.487 0.595 -0.108 -0.083 0.255 0.0732732502
- 397 0.237 -1.488 0.596 -0.110 -0.084 0.257 0.0732630673
- 398 0.238 -1.488 0.596 -0.110 -0.084 0.258 0.0732627839
- 399 0.238 -1.488 0.596 -0.110 -0.084 0.257 0.0732624241
- 403 0.247 -1.482 0.597 -0.104 -0.090 0.260 0.0732474931
- 437 0.238 -1.483 0.592 -0.110 -0.084 0.259 0.0732438122
- 439 0.238 -1.483 0.590 -0.110 -0.084 0.259 0.0732404503
- 449 0.238 -1.483 0.590 -0.108 -0.084 0.259 0.0732309201
- 451 0.238 -1.483 0.590 -0.105 -0.084 0.259 0.0732277520
- 452 0.238 -1.483 0.590 -0.106 -0.084 0.259 0.0732268628
- 462 0.238 -1.483 0.590 -0.106 -0.083 0.259 0.0732261879
- 471 0.241 -1.484 0.590 -0.107 -0.084 0.260 0.0732203038
- 472 0.242 -1.484 0.591 -0.108 -0.084 0.260 0.0732202274
- 481 0.245 -1.480 0.585 -0.105 -0.083 0.263 0.0732121668
- 527 0.242 -1.483 0.588 -0.105 -0.084 0.260 0.0732108126
- 547 0.243 -1.483 0.589 -0.106 -0.084 0.261 0.0732097022
- 549 0.243 -1.483 0.589 -0.106 -0.084 0.261 0.0732096414
- 551 0.244 -1.482 0.587 -0.104 -0.084 0.262 0.0732042478
- 556 0.245 -1.481 0.586 -0.103 -0.084 0.262 0.0732030385
- 559 0.245 -1.481 0.585 -0.103 -0.084 0.262 0.0732029930
- 561 0.245 -1.481 0.585 -0.103 -0.084 0.262 0.0732029320
- 562 0.245 -1.481 0.585 -0.103 -0.084 0.262 0.0732029164
- 564 0.245 -1.481 0.585 -0.103 -0.084 0.262 0.0732028100
- 577 0.245 -1.481 0.585 -0.103 -0.084 0.264 0.0732018670
- Powell done niters = 7
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.013482
- 1 -25.0 -25.0 25.0 1.015559
- 2 -25.0 25.0 -25.0 1.034208
- 3 -25.0 25.0 25.0 1.000666
- 4 25.0 -25.0 -25.0 1.034182
- 5 25.0 -25.0 25.0 0.991798
- 6 25.0 25.0 -25.0 1.006023
- 7 25.0 25.0 25.0 1.034180
- REL: 8 0.073202 8.130098 1.016262 rel = 0.0720305
- Number of iterations 7
- Min cost was 0.073202
- Number of FunctionCalls 641
- TolPowell 0.000100
- nMaxItersPowell 36
- OptimizationTime 2.591000 sec
- Parameters at optimum (transmm) 0.24532 -1.48124 0.58539
- Parameters at optimum (rotdeg) -0.10298 -0.08425 0.26413
- Final costs ----------------
- Number of surface hits 3238
- WM Intensity 60.0746 +/- 10.5131
- Ctx Intensity 78.1624 +/- 10.7433
- Pct Contrast 26.4330 +/- 15.2985
- Cost 0.0732
- RelCost 0.3170
- Reg at min cost was
- 0.999 -0.037 -0.029 0.250;
- 0.024 -0.123 0.992 -0.175;
- -0.040 -0.992 -0.122 -0.347;
- 0.000 0.000 0.000 1.000;
- Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/bbr.pass1.dat, type = 14
- Original Reg
- 0.999 -0.039 -0.025 0.009;
- 0.020 -0.121 0.992 1.308;
- -0.042 -0.992 -0.120 -0.930;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- 0.000 -0.002 0.004 -0.241;
- -0.005 0.002 0.000 1.483;
- -0.001 -0.000 0.002 -0.583;
- 0.000 0.000 0.000 0.000;
- Computing change in lh position
- LH rmsDiffMean 1.655014
- Computing change in rh position
- Surface RMS Diff (mm) 1.549561 1.872015
- mri_segreg done
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
- setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
- cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/scripts
- mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5
- sysname Linux
- hostname snake5
- machine x86_64
- user fkaule
- movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/template.nii
- regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/tmp.bbregister.19132/bbr.pass1.dat
- subject sub006
- dof 6
- outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/T2raw.dat
- UseMask 0
- UseLH 1
- UseRH 1
- nsubsamp 1
- PenaltySign -1
- PenaltySlope 0.500000
- PenaltyCenter 0.000000
- surfname white
- GMProjFrac 0.500000
- WMProjAbs 2.000000
- lhcostfile (null)
- rhcostfile (null)
- interp trilinear (1)
- frame 0
- TolPowell 0.000000
- nMaxItersPowell 36
- n1dmin 3
- Profile 0
- Gdiag_no -1
- AddNoise 0 (0)
- SynthSeed 1376539157
- TransRandMax 0.000000
- RotRandMax 0.000000
- Translations 0.000000 0.000000 0.000000
- Rotations 0.000000 0.000000 0.000000
- Input reg
- 0.999 -0.037 -0.029 0.250;
- 0.024 -0.123 0.992 -0.175;
- -0.040 -0.992 -0.122 -0.347;
- 0.000 0.000 0.000 1.000;
- Loading mov
- Projecting LH Surfs
- Loading lh.white surf
- Loading lh.thickness for GM
- GM Proj: 1 0.500000 2.000000
- WM Proj: 0 0.500000 2.000000
- Projecting RH Surfs
- Loading rh.white surf
- Loading rh.thickness
- Projecting RH Surfs
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.000144
- 1 -25.0 -25.0 25.0 1.011963
- 2 -25.0 25.0 -25.0 1.028762
- 3 -25.0 25.0 25.0 1.017444
- 4 25.0 -25.0 -25.0 1.023030
- 5 25.0 -25.0 25.0 1.003200
- 6 25.0 25.0 -25.0 1.006099
- 7 25.0 25.0 25.0 1.018704
- REL: 8 0.074000 8.109344 1.013668 rel = 0.0730019
- Initial costs ----------------
- Number of surface hits 323295
- WM Intensity 60.0945 +/- 10.4129
- Ctx Intensity 78.3960 +/- 10.7337
- Pct Contrast 26.6644 +/- 15.2882
- Cost 0.0740
- RelCost 0.0730
- ------------------------------------
- Brute force preopt -0.1 0.1 0.1, n = 729
- 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0884 0.0884 0.0
- 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.0860 0.0860 0.0
- 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.0824 0.0824 0.0
- 12 -0.1000 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.0789 0.0789 0.0
- 21 -0.1000 -0.1000 -0.1000 0.1000 0.0000 -0.1000 0.0775 0.0775 0.0
- 39 -0.1000 -0.1000 0.0000 0.0000 0.0000 -0.1000 0.0762 0.0762 0.0
- 120 -0.1000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.0755 0.0755 0.0
- 121 -0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0755 0.0755 0.0
- 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0732 0.0732 0.0
- Brute Force --------------------------
- Min cost was 0.073202
- Number of iterations 729
- Search time 2.842000 sec
- Parameters at best (transmm, rotdeg)
- 0.000 0.000 0.000 0.000 0.000 0.000
- --------------------------------------------
- Starting Powell Minimization
- Init Powel Params dof = 6
- 0 0
- 1 0
- 2 0
- 3 0
- 4 0
- 5 0
- 7 -0.011 0.000 0.000 0.000 0.000 0.000 0.0739579968
- 8 -0.023 0.000 0.000 0.000 0.000 0.000 0.0739393766
- 10 -0.024 0.000 0.000 0.000 0.000 0.000 0.0739391684
- 18 -0.024 0.068 0.000 0.000 0.000 0.000 0.0736410288
- 19 -0.024 0.054 0.000 0.000 0.000 0.000 0.0736210929
- 28 -0.024 0.054 0.144 0.000 0.000 0.000 0.0712034427
- 29 -0.024 0.054 0.145 0.000 0.000 0.000 0.0712014029
- 30 -0.024 0.054 0.154 0.000 0.000 0.000 0.0711957153
- 32 -0.024 0.054 0.152 0.000 0.000 0.000 0.0711948811
- 42 -0.024 0.054 0.152 0.003 0.000 0.000 0.0711937157
- 51 -0.024 0.054 0.152 0.003 -0.021 0.000 0.0710840807
- 52 -0.024 0.054 0.152 0.003 -0.028 0.000 0.0710745386
- 55 -0.024 0.054 0.152 0.003 -0.029 0.000 0.0710742340
- 63 -0.024 0.054 0.152 0.003 -0.029 0.003 0.0710718816
- 65 -0.024 0.054 0.152 0.003 -0.029 0.005 0.0710714752
- 66 -0.024 0.054 0.152 0.003 -0.029 0.006 0.0710712416
- 77 -0.013 0.054 0.152 0.003 -0.029 0.006 0.0710605916
- 87 -0.013 0.055 0.152 0.003 -0.029 0.006 0.0710605245
- 96 -0.013 0.055 0.154 0.003 -0.029 0.006 0.0710602217
- 106 -0.013 0.055 0.154 0.004 -0.029 0.006 0.0710595122
- 115 -0.013 0.055 0.154 0.004 -0.031 0.006 0.0710593576
- 124 -0.013 0.055 0.154 0.004 -0.031 0.010 0.0710563353
- 126 -0.013 0.055 0.154 0.004 -0.031 0.011 0.0710561702
- 127 -0.013 0.055 0.154 0.004 -0.031 0.012 0.0710560869
- 130 -0.003 0.056 0.156 0.006 -0.032 0.018 0.0710552827
- 136 -0.007 0.056 0.155 0.005 -0.032 0.016 0.0710535106
- 137 -0.008 0.056 0.155 0.005 -0.031 0.015 0.0710534580
- 138 -0.008 0.056 0.155 0.005 -0.031 0.016 0.0710533858
- 162 -0.008 0.057 0.155 0.005 -0.031 0.016 0.0710532018
- 171 -0.008 0.057 0.152 0.005 -0.031 0.016 0.0710519125
- 198 -0.006 0.057 0.153 0.005 -0.032 0.016 0.0710517517
- 199 -0.006 0.057 0.153 0.005 -0.032 0.016 0.0710517061
- 200 -0.007 0.057 0.152 0.005 -0.032 0.016 0.0710517012
- 203 -0.007 0.057 0.152 0.005 -0.032 0.016 0.0710516797
- 217 -0.007 0.057 0.152 0.005 -0.032 0.017 0.0710516335
- 270 -0.007 0.057 0.152 0.005 -0.032 0.017 0.0710516217
- Powell done niters = 4
- Computing relative cost
- 0 -25.0 -25.0 -25.0 1.000527
- 1 -25.0 -25.0 25.0 1.012389
- 2 -25.0 25.0 -25.0 1.028572
- 3 -25.0 25.0 25.0 1.018441
- 4 25.0 -25.0 -25.0 1.022629
- 5 25.0 -25.0 25.0 1.001609
- 6 25.0 25.0 -25.0 1.005235
- 7 25.0 25.0 25.0 1.020102
- REL: 8 0.071052 8.109503 1.013688 rel = 0.0700922
- Number of iterations 4
- Min cost was 0.071052
- Number of FunctionCalls 333
- TolPowell 0.000000
- nMaxItersPowell 36
- OptimizationTime 51.287000 sec
- Parameters at optimum (transmm) -0.00683 0.05697 0.15243
- Parameters at optimum (rotdeg) 0.00519 -0.03151 0.01697
- Final costs ----------------
- Number of surface hits 323295
- WM Intensity 60.0684 +/- 10.3946
- Ctx Intensity 78.3842 +/- 10.7444
- Pct Contrast 26.6871 +/- 15.2674
- Cost 0.0711
- RelCost 0.0730
- Reg at min cost was
- 0.999 -0.036 -0.029 0.243;
- 0.025 -0.123 0.992 -0.118;
- -0.040 -0.992 -0.122 -0.195;
- 0.000 0.000 0.000 1.000;
- Writing optimal reg to /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/T2raw.dat, type = 14
- Original Reg
- 0.999 -0.037 -0.029 0.250;
- 0.024 -0.123 0.992 -0.175;
- -0.040 -0.992 -0.122 -0.347;
- 0.000 0.000 0.000 1.000;
- Original Reg - Optimal Reg
- -0.000 -0.001 0.000 0.007;
- -0.000 -0.000 -0.000 -0.057;
- -0.001 0.000 -0.000 -0.153;
- 0.000 0.000 0.000 0.000;
- Computing change in lh position
- LH rmsDiffMean 0.153461
- Computing change in rh position
- Surface RMS Diff (mm) 0.170445 0.209095
- mri_segreg done
- tkregister2_cmdl --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/T2raw.dat --noedit --ltaout /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/T2raw.lta
- tkregister_tcl /opt/freesurfer/5.3.0/tktools/tkregister2.tcl
- INFO: no target volume specified, assuming FreeSurfer orig volume.
- target volume orig
- movable volume /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/orig/T2raw.mgz
- reg file /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/T2raw.dat
- LoadVol 0
- ZeroCRAS 0
- $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
- Diagnostic Level -1
- ---- Input registration matrix --------
- 0.999 -0.036 -0.029 0.243;
- 0.025 -0.123 0.992 -0.118;
- -0.040 -0.992 -0.122 -0.195;
- 0.000 0.000 0.000 1.000;
- float2int = 0
- ---------------------------------------
- INFO: loading target /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/orig.mgz
- Ttarg: --------------------
- -1.000 0.000 0.000 128.000;
- 0.000 0.000 1.000 -128.000;
- 0.000 -1.000 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- INFO: loading movable /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/orig/T2raw.mgz
- Tmov: --------------------
- -0.700 0.000 0.000 95.889;
- 0.000 0.000 0.667 -128.000;
- 0.000 -0.667 0.000 128.000;
- 0.000 0.000 0.000 1.000;
- mkheaderreg = 0, float2int = 0
- ---- Input registration matrix --------
- 0.999 -0.036 -0.029 0.243;
- 0.025 -0.123 0.992 -0.118;
- -0.040 -0.992 -0.122 -0.195;
- 0.000 0.000 0.000 1.000;
- Determinant 1
- subject = sub006
- RegMat ---------------------------
- 0.999 -0.036 -0.029 0.243;
- 0.025 -0.123 0.992 -0.118;
- -0.040 -0.992 -0.122 -0.195;
- 0.000 0.000 0.000 1.000;
- transformed matrix:
- 1.000 -0.005 0.001 -0.130;
- 0.005 1.000 0.005 -0.080;
- -0.001 -0.005 1.000 0.196;
- 0.000 0.000 0.000 1.000;
- transformed matrix:
- 0.699 -0.026 -0.016 40.677;
- -0.021 -0.081 -0.661 273.305;
- 0.025 0.661 -0.082 13.122;
- 0.000 0.000 0.000 1.000;
- Cleaning up
-
- Started at Thu Aug 8 23:20:09 CEST 2013
- Ended at Thu Aug 8 23:33:28 CEST 2013
- BBR-Run-Time-Sec 799
-
- bbregister Done
- To check results, run:
- tkregister2 --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/orig/T2raw.mgz --reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub006/mri/transforms/T2raw.dat --surf
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