wmparc.stats 11 KB

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  1. # Title Segmentation Statistics
  2. #
  3. # generating_program mri_segstats
  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub005 --surf-wm-vol --ctab /opt/freesurfer/5.3.0/WMParcStatsLUT.txt --etiv
  6. # sysname Linux
  7. # hostname snake4
  8. # machine x86_64
  9. # user fkaule
  10. # anatomy_type volume
  11. #
  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
  13. # subjectname sub005
  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 210790.046283, mm^3
  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 210686.930209, mm^3
  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 421476.976492, mm^3
  17. # Measure Mask, MaskVol, Mask Volume, 1526731.000000, mm^3
  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1108117.508417, mm^3
  19. # SegVolFile mri/wmparc.mgz
  20. # SegVolFileTimeStamp 2013/08/08 23:49:51
  21. # ColorTable /opt/freesurfer/5.3.0/WMParcStatsLUT.txt
  22. # ColorTableTimeStamp 2013/05/13 23:21:15
  23. # InVolFile mri/norm.mgz
  24. # InVolFileTimeStamp 2013/08/08 12:13:44
  25. # InVolFrame 0
  26. # PVVolFile mri/norm.mgz
  27. # PVVolFileTimeStamp 2013/08/08 12:13:44
  28. # ExcludeSegId 0
  29. # Only reporting non-empty segmentations
  30. # VoxelVolume_mm3 1
  31. # TableCol 1 ColHeader Index
  32. # TableCol 1 FieldName Index
  33. # TableCol 1 Units NA
  34. # TableCol 2 ColHeader SegId
  35. # TableCol 2 FieldName Segmentation Id
  36. # TableCol 2 Units NA
  37. # TableCol 3 ColHeader NVoxels
  38. # TableCol 3 FieldName Number of Voxels
  39. # TableCol 3 Units unitless
  40. # TableCol 4 ColHeader Volume_mm3
  41. # TableCol 4 FieldName Volume
  42. # TableCol 4 Units mm^3
  43. # TableCol 5 ColHeader StructName
  44. # TableCol 5 FieldName Structure Name
  45. # TableCol 5 Units NA
  46. # TableCol 6 ColHeader normMean
  47. # TableCol 6 FieldName Intensity normMean
  48. # TableCol 6 Units MR
  49. # TableCol 7 ColHeader normStdDev
  50. # TableCol 7 FieldName Itensity normStdDev
  51. # TableCol 7 Units MR
  52. # TableCol 8 ColHeader normMin
  53. # TableCol 8 FieldName Intensity normMin
  54. # TableCol 8 Units MR
  55. # TableCol 9 ColHeader normMax
  56. # TableCol 9 FieldName Intensity normMax
  57. # TableCol 9 Units MR
  58. # TableCol 10 ColHeader normRange
  59. # TableCol 10 FieldName Intensity normRange
  60. # TableCol 10 Units MR
  61. # NRows 70
  62. # NTableCols 10
  63. # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
  64. 1 3001 3450 3450.1 wm-lh-bankssts 104.6726 8.9662 65.0000 124.0000 59.0000
  65. 2 3002 3079 3079.5 wm-lh-caudalanteriorcingulate 98.4428 8.4476 42.0000 116.0000 74.0000
  66. 3 3003 5858 5858.0 wm-lh-caudalmiddlefrontal 98.9997 10.0688 63.0000 118.0000 55.0000
  67. 4 3005 2317 2316.7 wm-lh-cuneus 103.9468 10.6914 68.0000 131.0000 63.0000
  68. 5 3006 737 737.1 wm-lh-entorhinal 85.7141 8.9066 64.0000 109.0000 45.0000
  69. 6 3007 6795 6795.3 wm-lh-fusiform 96.5956 10.1527 57.0000 127.0000 70.0000
  70. 7 3008 8042 8041.7 wm-lh-inferiorparietal 108.1254 10.0428 72.0000 129.0000 57.0000
  71. 8 3009 5693 5693.2 wm-lh-inferiortemporal 95.1193 11.3814 61.0000 120.0000 59.0000
  72. 9 3010 3544 3544.3 wm-lh-isthmuscingulate 97.9808 9.4741 53.0000 119.0000 66.0000
  73. 10 3011 9210 9210.2 wm-lh-lateraloccipital 103.3079 12.0337 63.0000 135.0000 72.0000
  74. 11 3012 6234 6234.1 wm-lh-lateralorbitofrontal 95.6715 11.5341 50.0000 124.0000 74.0000
  75. 12 3013 5646 5646.0 wm-lh-lingual 92.0771 10.5386 10.0000 123.0000 113.0000
  76. 13 3014 2965 2965.3 wm-lh-medialorbitofrontal 91.1912 13.2270 30.0000 118.0000 88.0000
  77. 14 3015 4819 4819.4 wm-lh-middletemporal 95.1261 11.3369 64.0000 126.0000 62.0000
  78. 15 3016 1324 1324.1 wm-lh-parahippocampal 87.4889 8.1974 67.0000 109.0000 42.0000
  79. 16 3017 2937 2937.1 wm-lh-paracentral 99.8824 8.8676 71.0000 119.0000 48.0000
  80. 17 3018 3904 3903.9 wm-lh-parsopercularis 97.5436 10.4846 58.0000 118.0000 60.0000
  81. 18 3019 887 887.3 wm-lh-parsorbitalis 98.8980 11.7907 72.0000 122.0000 50.0000
  82. 19 3020 3079 3079.2 wm-lh-parstriangularis 101.7110 9.6060 70.0000 122.0000 52.0000
  83. 20 3021 3652 3652.2 wm-lh-pericalcarine 100.1531 10.2761 67.0000 125.0000 58.0000
  84. 21 3022 7938 7937.8 wm-lh-postcentral 100.4521 10.5391 67.0000 126.0000 59.0000
  85. 22 3023 4597 4596.8 wm-lh-posteriorcingulate 100.0886 9.1279 30.0000 121.0000 91.0000
  86. 23 3024 11645 11645.0 wm-lh-precentral 100.4300 9.2543 66.0000 122.0000 56.0000
  87. 24 3025 8653 8652.6 wm-lh-precuneus 103.7995 9.8028 54.0000 125.0000 71.0000
  88. 25 3026 3059 3058.8 wm-lh-rostralanteriorcingulate 96.7913 10.8993 51.0000 117.0000 66.0000
  89. 26 3027 12814 12814.4 wm-lh-rostralmiddlefrontal 98.8560 10.7133 62.0000 121.0000 59.0000
  90. 27 3028 17570 17569.9 wm-lh-superiorfrontal 94.2852 10.2629 52.0000 115.0000 63.0000
  91. 28 3029 9900 9900.3 wm-lh-superiorparietal 107.7201 9.8443 73.0000 132.0000 59.0000
  92. 29 3030 8486 8486.3 wm-lh-superiortemporal 97.3526 10.7985 64.0000 124.0000 60.0000
  93. 30 3031 8145 8145.2 wm-lh-supramarginal 105.7756 11.2285 67.0000 128.0000 61.0000
  94. 31 3032 244 244.1 wm-lh-frontalpole 92.0769 10.1352 68.0000 111.0000 43.0000
  95. 32 3033 612 612.2 wm-lh-temporalpole 90.5142 10.5347 66.0000 116.0000 50.0000
  96. 33 3034 894 894.1 wm-lh-transversetemporal 98.2621 7.6677 71.0000 115.0000 44.0000
  97. 34 3035 8582 8582.2 wm-lh-insula 94.2886 11.8838 28.0000 125.0000 97.0000
  98. 35 4001 3220 3219.6 wm-rh-bankssts 102.1654 8.1861 70.0000 121.0000 51.0000
  99. 36 4002 3311 3310.7 wm-rh-caudalanteriorcingulate 95.7201 8.9588 57.0000 114.0000 57.0000
  100. 37 4003 4912 4912.3 wm-rh-caudalmiddlefrontal 98.4180 9.4270 65.0000 119.0000 54.0000
  101. 38 4005 2049 2048.8 wm-rh-cuneus 103.3532 12.7243 68.0000 133.0000 65.0000
  102. 39 4006 470 470.0 wm-rh-entorhinal 83.9135 9.4393 61.0000 112.0000 51.0000
  103. 40 4007 5955 5954.6 wm-rh-fusiform 94.6843 10.7365 55.0000 119.0000 64.0000
  104. 41 4008 9604 9604.0 wm-rh-inferiorparietal 106.7920 10.6920 64.0000 131.0000 67.0000
  105. 42 4009 5882 5882.3 wm-rh-inferiortemporal 93.8386 10.8189 60.0000 118.0000 58.0000
  106. 43 4010 2583 2582.7 wm-rh-isthmuscingulate 97.3657 9.0619 57.0000 121.0000 64.0000
  107. 44 4011 9286 9286.5 wm-rh-lateraloccipital 103.9783 10.8347 67.0000 131.0000 64.0000
  108. 45 4012 6155 6154.9 wm-rh-lateralorbitofrontal 96.1263 13.3710 45.0000 129.0000 84.0000
  109. 46 4013 5510 5509.6 wm-rh-lingual 92.7780 11.6846 14.0000 123.0000 109.0000
  110. 47 4014 3455 3455.0 wm-rh-medialorbitofrontal 94.4790 13.2358 44.0000 124.0000 80.0000
  111. 48 4015 6159 6158.6 wm-rh-middletemporal 96.2126 10.4718 60.0000 118.0000 58.0000
  112. 49 4016 1559 1558.5 wm-rh-parahippocampal 86.9156 8.6442 60.0000 110.0000 50.0000
  113. 50 4017 3884 3884.0 wm-rh-paracentral 100.3017 8.6913 63.0000 119.0000 56.0000
  114. 51 4018 3478 3478.0 wm-rh-parsopercularis 98.2198 9.9257 65.0000 119.0000 54.0000
  115. 52 4019 1207 1207.1 wm-rh-parsorbitalis 100.9634 12.2854 68.0000 124.0000 56.0000
  116. 53 4020 3691 3690.8 wm-rh-parstriangularis 104.2432 9.7221 68.0000 126.0000 58.0000
  117. 54 4021 3452 3452.0 wm-rh-pericalcarine 98.9673 11.2621 45.0000 127.0000 82.0000
  118. 55 4022 7737 7737.5 wm-rh-postcentral 99.4245 10.5196 65.0000 125.0000 60.0000
  119. 56 4023 5053 5053.3 wm-rh-posteriorcingulate 98.4871 9.3327 36.0000 120.0000 84.0000
  120. 57 4024 12575 12574.7 wm-rh-precentral 100.1136 9.2224 49.0000 122.0000 73.0000
  121. 58 4025 9707 9706.6 wm-rh-precuneus 103.4612 10.3458 41.0000 131.0000 90.0000
  122. 59 4026 2264 2264.0 wm-rh-rostralanteriorcingulate 95.2119 13.2255 17.0000 118.0000 101.0000
  123. 60 4027 12224 12224.0 wm-rh-rostralmiddlefrontal 99.3565 11.1410 54.0000 124.0000 70.0000
  124. 61 4028 17833 17832.6 wm-rh-superiorfrontal 94.2234 10.6714 41.0000 121.0000 80.0000
  125. 62 4029 9683 9683.0 wm-rh-superiorparietal 106.7318 10.4664 68.0000 131.0000 63.0000
  126. 63 4030 7574 7574.4 wm-rh-superiortemporal 95.5219 9.5140 65.0000 118.0000 53.0000
  127. 64 4031 7712 7712.0 wm-rh-supramarginal 104.9171 10.9208 70.0000 125.0000 55.0000
  128. 65 4032 276 275.6 wm-rh-frontalpole 87.9135 11.1848 65.0000 109.0000 44.0000
  129. 66 4033 623 622.8 wm-rh-temporalpole 84.3667 10.3167 60.0000 111.0000 51.0000
  130. 67 4034 632 632.4 wm-rh-transversetemporal 94.9451 7.8757 74.0000 112.0000 38.0000
  131. 68 4035 7648 7648.4 wm-rh-insula 89.5201 11.8639 29.0000 116.0000 87.0000
  132. 69 5001 24132 24131.9 Left-UnsegmentedWhiteMatter 100.9953 11.0165 17.0000 124.0000 107.0000
  133. 70 5002 24033 24033.5 Right-UnsegmentedWhiteMatter 99.9509 10.7928 16.0000 124.0000 108.0000