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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub004 --surf-wm-vol --ctab /opt/freesurfer/5.3.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake5
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub004
    14. 

  14. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 216143.445986, mm^3
    15. 

  15. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 224219.699555, mm^3
    16. 

  16. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 440363.145541, mm^3
    17. 

  17. # Measure Mask, MaskVol, Mask Volume, 1596634.000000, mm^3
    18. 

  18. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1146800.634699, mm^3
    19. 

  19. # SegVolFile mri/wmparc.mgz 
    20. 

  20. # SegVolFileTimeStamp  2013/08/08 23:05:10 
    21. 

  21. # ColorTable /opt/freesurfer/5.3.0/WMParcStatsLUT.txt 
    22. 

  22. # ColorTableTimeStamp 2013/05/13 23:21:15 
    23. 

  23. # InVolFile  mri/norm.mgz 
    24. 

  24. # InVolFileTimeStamp  2013/08/08 12:11:36 
    25. 

  25. # InVolFrame 0 
    26. 

  26. # PVVolFile  mri/norm.mgz 
    27. 

  27. # PVVolFileTimeStamp  2013/08/08 12:11:36 
    28. 

  28. # ExcludeSegId 0 
    29. 

  29. # Only reporting non-empty segmentations
    30. 

  30. # VoxelVolume_mm3 1 
    31. 

  31. # TableCol  1 ColHeader Index 
    32. 

  32. # TableCol  1 FieldName Index 
    33. 

  33. # TableCol  1 Units     NA 
    34. 

  34. # TableCol  2 ColHeader SegId 
    35. 

  35. # TableCol  2 FieldName Segmentation Id
    36. 

  36. # TableCol  2 Units     NA
    37. 

  37. # TableCol  3 ColHeader NVoxels 
    38. 

  38. # TableCol  3 FieldName Number of Voxels
    39. 

  39. # TableCol  3 Units     unitless
    40. 

  40. # TableCol  4 ColHeader Volume_mm3
    41. 

  41. # TableCol  4 FieldName Volume
    42. 

  42. # TableCol  4 Units     mm^3
    43. 

  43. # TableCol  5 ColHeader StructName
    44. 

  44. # TableCol  5 FieldName Structure Name
    45. 

  45. # TableCol  5 Units     NA
    46. 

  46. # TableCol  6 ColHeader normMean 
    47. 

  47. # TableCol  6 FieldName Intensity normMean
    48. 

  48. # TableCol  6 Units     MR
    49. 

  49. # TableCol  7 ColHeader normStdDev
    50. 

  50. # TableCol  7 FieldName Itensity normStdDev
    51. 

  51. # TableCol  7 Units     MR
    52. 

  52. # TableCol  8 ColHeader normMin
    53. 

  53. # TableCol  8 FieldName Intensity normMin
    54. 

  54. # TableCol  8 Units     MR
    55. 

  55. # TableCol  9 ColHeader normMax
    56. 

  56. # TableCol  9 FieldName Intensity normMax
    57. 

  57. # TableCol  9 Units     MR
    58. 

  58. # TableCol 10 ColHeader normRange
    59. 

  59. # TableCol 10 FieldName Intensity normRange
    60. 

  60. # TableCol 10 Units     MR
    61. 

  61. # NRows 70 
    62. 

  62. # NTableCols 10 
    63. 

  63. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    64. 

  64.   1 3001      3430     3429.5  wm-lh-bankssts                   105.3880     9.4647    62.0000   124.0000    62.0000 
    65. 

  65.   2 3002      3072     3071.7  wm-lh-caudalanteriorcingulate     99.8432     9.3756    52.0000   115.0000    63.0000 
    66. 

  66.   3 3003      6882     6882.2  wm-lh-caudalmiddlefrontal         96.1210    10.2014    49.0000   114.0000    65.0000 
    67. 

  67.   4 3005      2474     2474.2  wm-lh-cuneus                     101.0389    11.2562    68.0000   125.0000    57.0000 
    68. 

  68.   5 3006      1131     1131.1  wm-lh-entorhinal                  86.5064     8.7459    63.0000   109.0000    46.0000 
    69. 

  69.   6 3007      7046     7046.5  wm-lh-fusiform                    98.4630    10.1216    57.0000   119.0000    62.0000 
    70. 

  70.   7 3008      9947     9946.8  wm-lh-inferiorparietal           107.4908    10.4571    55.0000   126.0000    71.0000 
    71. 

  71.   8 3009      6573     6572.7  wm-lh-inferiortemporal            97.2546    10.9549    63.0000   118.0000    55.0000 
    72. 

  72.   9 3010      2922     2921.5  wm-lh-isthmuscingulate           101.5380     8.8893    43.0000   119.0000    76.0000 
    73. 

  73.  10 3011      9817     9816.7  wm-lh-lateraloccipital           103.9981    10.4188    69.0000   127.0000    58.0000 
    74. 

  74.  11 3012      6654     6654.4  wm-lh-lateralorbitofrontal        98.8802    10.4410    64.0000   119.0000    55.0000 
    75. 

  75.  12 3013      4892     4892.0  wm-lh-lingual                     95.1473    10.6408    56.0000   123.0000    67.0000 
    76. 

  76.  13 3014      2614     2614.0  wm-lh-medialorbitofrontal         90.1672    12.8854    46.0000   115.0000    69.0000 
    77. 

  77.  14 3015      6059     6058.6  wm-lh-middletemporal              96.6099    11.8476    63.0000   124.0000    61.0000 
    78. 

  78.  15 3016      1480     1479.8  wm-lh-parahippocampal             91.3993     8.0842    66.0000   113.0000    47.0000 
    79. 

  79.  16 3017      3244     3243.6  wm-lh-paracentral                100.0910     9.6173    68.0000   120.0000    52.0000 
    80. 

  80.  17 3018      3601     3601.3  wm-lh-parsopercularis             99.0704     9.1069    69.0000   114.0000    45.0000 
    81. 

  81.  18 3019       876      876.4  wm-lh-parsorbitalis               97.9512    10.4471    71.0000   121.0000    50.0000 
    82. 

  82.  19 3020      2589     2588.6  wm-lh-parstriangularis           101.9647     8.6852    73.0000   122.0000    49.0000 
    83. 

  83.  20 3021      3509     3508.6  wm-lh-pericalcarine              101.5765    10.3244    24.0000   124.0000   100.0000 
    84. 

  84.  21 3022      7005     7004.9  wm-lh-postcentral                100.0273    10.2535    68.0000   126.0000    58.0000 
    85. 

  85.  22 3023      4383     4382.9  wm-lh-posteriorcingulate         102.6361    10.4532    30.0000   123.0000    93.0000 
    86. 

  86.  23 3024     11179    11178.7  wm-lh-precentral                  99.2087     8.7274    61.0000   118.0000    57.0000 
    87. 

  87.  24 3025      8174     8173.9  wm-lh-precuneus                  104.2024    10.2914    10.0000   127.0000   117.0000 
    88. 

  88.  25 3026      2578     2578.4  wm-lh-rostralanteriorcingulate    98.9570    11.3675    26.0000   119.0000    93.0000 
    89. 

  89.  26 3027     11866    11865.7  wm-lh-rostralmiddlefrontal        98.7595    10.6954    60.0000   119.0000    59.0000 
    90. 

  90.  27 3028     18215    18214.9  wm-lh-superiorfrontal             96.4079    10.0936    59.0000   116.0000    57.0000 
    91. 

  91.  28 3029     11089    11088.9  wm-lh-superiorparietal           106.2022     9.7434    75.0000   125.0000    50.0000 
    92. 

  92.  29 3030      7672     7671.7  wm-lh-superiortemporal            99.6560    10.5609    54.0000   123.0000    69.0000 
    93. 

  93.  30 3031      7906     7905.9  wm-lh-supramarginal              106.3006    10.8595    54.0000   128.0000    74.0000 
    94. 

  94.  31 3032       172      172.0  wm-lh-frontalpole                 86.9444    10.6881    65.0000   109.0000    44.0000 
    95. 

  95.  32 3033       732      731.8  wm-lh-temporalpole                87.8071     9.7308    62.0000   110.0000    48.0000 
    96. 

  96.  33 3034       741      741.0  wm-lh-transversetemporal         100.7411     8.7044    77.0000   118.0000    41.0000 
    97. 

  97.  34 3035      7878     7878.3  wm-lh-insula                      96.3314    12.0326    33.0000   122.0000    89.0000 
    98. 

  98.  35 4001      3165     3164.9  wm-rh-bankssts                   105.7467     8.5535    64.0000   125.0000    61.0000 
    99. 

  99.  36 4002      3040     3039.8  wm-rh-caudalanteriorcingulate    100.9674     7.7819    62.0000   117.0000    55.0000 
    100. 

  100.  37 4003      5661     5660.6  wm-rh-caudalmiddlefrontal         96.5662    10.4487    58.0000   115.0000    57.0000 
    101. 

  101.  38 4005      1997     1996.6  wm-rh-cuneus                     101.8265    11.0768    72.0000   128.0000    56.0000 
    102. 

  102.  39 4006       726      725.6  wm-rh-entorhinal                  83.4405     8.4712    59.0000   103.0000    44.0000 
    103. 

  103.  40 4007      6099     6098.6  wm-rh-fusiform                    94.8726    10.9842    39.0000   121.0000    82.0000 
    104. 

  104.  41 4008     13752    13751.5  wm-rh-inferiorparietal           105.2179    10.7240    55.0000   126.0000    71.0000 
    105. 

  105.  42 4009      6162     6161.6  wm-rh-inferiortemporal            93.7655    11.4780    60.0000   118.0000    58.0000 
    106. 

  106.  43 4010      2838     2837.6  wm-rh-isthmuscingulate           100.1797     9.7261    29.0000   122.0000    93.0000 
    107. 

  107.  44 4011      8924     8923.8  wm-rh-lateraloccipital           102.9584    10.4031    67.0000   132.0000    65.0000 
    108. 

  108.  45 4012      6898     6898.3  wm-rh-lateralorbitofrontal       100.1117    10.2005    58.0000   121.0000    63.0000 
    109. 

  109.  46 4013      5965     5965.3  wm-rh-lingual                     96.0823    10.7276    35.0000   122.0000    87.0000 
    110. 

  110.  47 4014      3687     3686.7  wm-rh-medialorbitofrontal         96.4864    11.4962    54.0000   118.0000    64.0000 
    111. 

  111.  48 4015      6771     6770.7  wm-rh-middletemporal              96.0819    11.4538    62.0000   119.0000    57.0000 
    112. 

  112.  49 4016      1422     1422.3  wm-rh-parahippocampal             89.2560     9.2107    61.0000   110.0000    49.0000 
    113. 

  113.  50 4017      4300     4300.5  wm-rh-paracentral                102.3056     9.5799    69.0000   124.0000    55.0000 
    114. 

  114.  51 4018      3819     3819.4  wm-rh-parsopercularis             98.6072     9.5915    68.0000   116.0000    48.0000 
    115. 

  115.  52 4019      1366     1366.4  wm-rh-parsorbitalis               96.2047    10.3014    67.0000   118.0000    51.0000 
    116. 

  116.  53 4020      3744     3744.1  wm-rh-parstriangularis            99.7749     9.5637    69.0000   118.0000    49.0000 
    117. 

  117.  54 4021      3221     3221.3  wm-rh-pericalcarine              101.7880     9.9912    71.0000   121.0000    50.0000 
    118. 

  118.  55 4022      6547     6546.7  wm-rh-postcentral                 99.1058    10.5337    63.0000   125.0000    62.0000 
    119. 

  119.  56 4023      4196     4195.6  wm-rh-posteriorcingulate         101.9059     9.9926    38.0000   119.0000    81.0000 
    120. 

  120.  57 4024     11868    11867.8  wm-rh-precentral                  98.2436     9.4806    65.0000   120.0000    55.0000 
    121. 

  121.  58 4025      8734     8733.6  wm-rh-precuneus                  103.7219     9.8766    10.0000   123.0000   113.0000 
    122. 

  122.  59 4026      2297     2296.9  wm-rh-rostralanteriorcingulate    95.8489    15.0968    24.0000   120.0000    96.0000 
    123. 

  123.  60 4027     13913    13913.2  wm-rh-rostralmiddlefrontal        95.6708    11.1099    62.0000   117.0000    55.0000 
    124. 

  124.  61 4028     16418    16417.9  wm-rh-superiorfrontal             96.0564     9.6566    60.0000   116.0000    56.0000 
    125. 

  125.  62 4029     11623    11623.3  wm-rh-superiorparietal           105.0263    10.5919    40.0000   125.0000    85.0000 
    126. 

  126.  63 4030      6587     6587.1  wm-rh-superiortemporal            96.6861    10.5317    64.0000   125.0000    61.0000 
    127. 

  127.  64 4031      8010     8010.5  wm-rh-supramarginal              106.1502    10.9921    70.0000   128.0000    58.0000 
    128. 

  128.  65 4032       359      359.1  wm-rh-frontalpole                 87.4263     9.9877    65.0000   109.0000    44.0000 
    129. 

  129.  66 4033       720      720.2  wm-rh-temporalpole                82.6488     9.8518    60.0000   104.0000    44.0000 
    130. 

  130.  67 4034       452      452.5  wm-rh-transversetemporal          99.7824     7.8815    79.0000   125.0000    46.0000 
    131. 

  131.  68 4035      7547     7546.8  wm-rh-insula                      93.7606    12.5456    19.0000   121.0000   102.0000 
    132. 

  132.  69 5001     27692    27692.2  Left-UnsegmentedWhiteMatter      104.1276     9.6181    12.0000   125.0000   113.0000 
    133. 

  133.  70 5002     32007    32007.4  Right-UnsegmentedWhiteMatter     102.9775     9.5883    21.0000   126.0000   105.0000 
    134.