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aseg.stats

aseg.stats 9.4 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3.0/ASegStatsLUT.txt --subject sub004 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname snake5
    8. 

  8. # machine  x86_64
    9. 

  9. # user     fkaule
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    13. 

  13. # subjectname sub004
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1151940.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1138507.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1140454.965589, mm^3
    17. 

  17. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 245603.857289, mm^3
    18. 

  18. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 247416.962758, mm^3
    19. 

  19. # Measure Cortex, CortexVol, Total cortical gray matter volume, 493020.820047, mm^3
    20. 

  20. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 216143.445986, mm^3
    21. 

  21. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 224219.699555, mm^3
    22. 

  22. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 440363.145541, mm^3
    23. 

  23. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 69284.000000, mm^3
    24. 

  24. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 671700.820047, mm^3
    25. 

  25. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1013770.965589, mm^3
    26. 

  26. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1003808.965589, mm^3
    27. 

  27. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1000774.000000, mm^3
    28. 

  28. # Measure Mask, MaskVol, Mask Volume, 1596634.000000, mm^3
    29. 

  29. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 1.004481, unitless
    30. 

  30. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.392251, unitless
    31. 

  31. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 13, unitless
    32. 

  32. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 17, unitless
    33. 

  33. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 30, unitless
    34. 

  34. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1146800.634699, mm^3
    35. 

  35. # SegVolFile mri/aseg.mgz 
    36. 

  36. # SegVolFileTimeStamp  2013/08/08 17:02:10 
    37. 

  37. # ColorTable /opt/freesurfer/5.3.0/ASegStatsLUT.txt 
    38. 

  38. # ColorTableTimeStamp 2013/05/13 23:21:15 
    39. 

  39. # InVolFile  mri/norm.mgz 
    40. 

  40. # InVolFileTimeStamp  2013/08/08 12:11:36 
    41. 

  41. # InVolFrame 0 
    42. 

  42. # PVVolFile  mri/norm.mgz 
    43. 

  43. # PVVolFileTimeStamp  2013/08/08 12:11:36 
    44. 

  44. # Excluding Cortical Gray and White Matter
    45. 

  45. # ExcludeSegId 0 2 3 41 42 
    46. 

  46. # VoxelVolume_mm3 1 
    47. 

  47. # TableCol  1 ColHeader Index 
    48. 

  48. # TableCol  1 FieldName Index 
    49. 

  49. # TableCol  1 Units     NA 
    50. 

  50. # TableCol  2 ColHeader SegId 
    51. 

  51. # TableCol  2 FieldName Segmentation Id
    52. 

  52. # TableCol  2 Units     NA
    53. 

  53. # TableCol  3 ColHeader NVoxels 
    54. 

  54. # TableCol  3 FieldName Number of Voxels
    55. 

  55. # TableCol  3 Units     unitless
    56. 

  56. # TableCol  4 ColHeader Volume_mm3
    57. 

  57. # TableCol  4 FieldName Volume
    58. 

  58. # TableCol  4 Units     mm^3
    59. 

  59. # TableCol  5 ColHeader StructName
    60. 

  60. # TableCol  5 FieldName Structure Name
    61. 

  61. # TableCol  5 Units     NA
    62. 

  62. # TableCol  6 ColHeader normMean 
    63. 

  63. # TableCol  6 FieldName Intensity normMean
    64. 

  64. # TableCol  6 Units     MR
    65. 

  65. # TableCol  7 ColHeader normStdDev
    66. 

  66. # TableCol  7 FieldName Itensity normStdDev
    67. 

  67. # TableCol  7 Units     MR
    68. 

  68. # TableCol  8 ColHeader normMin
    69. 

  69. # TableCol  8 FieldName Intensity normMin
    70. 

  70. # TableCol  8 Units     MR
    71. 

  71. # TableCol  9 ColHeader normMax
    72. 

  72. # TableCol  9 FieldName Intensity normMax
    73. 

  73. # TableCol  9 Units     MR
    74. 

  74. # TableCol 10 ColHeader normRange
    75. 

  75. # TableCol 10 FieldName Intensity normRange
    76. 

  76. # TableCol 10 Units     MR
    77. 

  77. # NRows 45 
    78. 

  78. # NTableCols 10 
    79. 

  79. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    80. 

  80.   1   4      3581     3580.6  Left-Lateral-Ventricle            21.4524    14.7792     0.0000    75.0000    75.0000 
    81. 

  81.   2   5       556      555.9  Left-Inf-Lat-Vent                 34.6582    15.0162     4.0000    79.0000    75.0000 
    82. 

  82.   3   7     14525    14525.0  Left-Cerebellum-White-Matter      85.0715     7.6547    22.0000   121.0000    99.0000 
    83. 

  83.   4   8     54206    54205.6  Left-Cerebellum-Cortex            57.8341     9.8211     7.0000    94.0000    87.0000 
    84. 

  84.   5  10      9072     9071.6  Left-Thalamus-Proper              84.2628    10.2679    41.0000   109.0000    68.0000 
    85. 

  85.   6  11      4223     4222.5  Left-Caudate                      69.0751     9.6612    25.0000   104.0000    79.0000 
    86. 

  86.   7  12      6940     6940.1  Left-Putamen                      77.3547     8.3703    33.0000   109.0000    76.0000 
    87. 

  87.   8  13      2242     2241.9  Left-Pallidum                     88.3084     6.7204    12.0000   106.0000    94.0000 
    88. 

  88.   9  14       519      519.1  3rd-Ventricle                     35.4338    16.2239     1.0000    89.0000    88.0000 
    89. 

  89.  10  15      2351     2350.7  4th-Ventricle                     18.8809    11.2844     0.0000    73.0000    73.0000 
    90. 

  90.  11  16     21530    21529.9  Brain-Stem                        80.9264     9.1828    15.0000   118.0000   103.0000 
    91. 

  91.  12  17      4111     4111.2  Left-Hippocampus                  61.7857     9.2107    15.0000   104.0000    89.0000 
    92. 

  92.  13  18      1762     1761.8  Left-Amygdala                     61.6210     8.2161    33.0000    90.0000    57.0000 
    93. 

  93.  14  24       818      818.2  CSF                               32.5255    18.1215     1.0000    95.0000    94.0000 
    94. 

  94.  15  26       777      776.7  Left-Accumbens-area               61.8820     7.2453    37.0000    88.0000    51.0000 
    95. 

  95.  16  28      4598     4598.3  Left-VentralDC                    86.3475    10.9801    24.0000   127.0000   103.0000 
    96. 

  96.  17  30        93       92.8  Left-vessel                       56.3173    16.5320    21.0000    92.0000    71.0000 
    97. 

  97.  18  31       959      959.5  Left-choroid-plexus               50.8248    16.5786    15.0000   112.0000    97.0000 
    98. 

  98.  19  43      3415     3415.0  Right-Lateral-Ventricle           19.3444    13.5461     0.0000    89.0000    89.0000 
    99. 

  99.  20  44       333      333.3  Right-Inf-Lat-Vent                29.3962    14.3173     0.0000    75.0000    75.0000 
    100. 

  100.  21  46     15065    15064.8  Right-Cerebellum-White-Matter     83.4030     7.8220    11.0000   122.0000   111.0000 
    101. 

  101.  22  47     56389    56389.2  Right-Cerebellum-Cortex           55.9217    10.1101     5.0000   109.0000   104.0000 
    102. 

  102.  23  49      7571     7570.7  Right-Thalamus-Proper             79.7462    10.2390    23.0000   108.0000    85.0000 
    103. 

  103.  24  50      4221     4221.2  Right-Caudate                     69.4121     9.6386    26.0000   109.0000    83.0000 
    104. 

  104.  25  51      6773     6773.3  Right-Putamen                     77.8753     7.5933    41.0000   106.0000    65.0000 
    105. 

  105.  26  52      2764     2763.7  Right-Pallidum                    91.5802     5.4133    61.0000   110.0000    49.0000 
    106. 

  106.  27  53      4527     4526.8  Right-Hippocampus                 59.8668     9.9782    15.0000   103.0000    88.0000 
    107. 

  107.  28  54      2054     2054.4  Right-Amygdala                    63.3553     8.0984    27.0000    88.0000    61.0000 
    108. 

  108.  29  58       828      827.7  Right-Accumbens-area              67.0978     7.4456    40.0000    94.0000    54.0000 
    109. 

  109.  30  60      4491     4490.9  Right-VentralDC                   86.3511    11.8784    14.0000   123.0000   109.0000 
    110. 

  110.  31  62       164      164.5  Right-vessel                      58.1508    16.6330    15.0000    92.0000    77.0000 
    111. 

  111.  32  63      1229     1229.0  Right-choroid-plexus              53.3336    16.2036    13.0000   100.0000    87.0000 
    112. 

  112.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    113. 

  113.  34  77       944      944.0  WM-hypointensities                74.7084    14.5680    10.0000   117.0000   107.0000 
    114. 

  114.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    115. 

  115.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  37  80        20       20.2  non-WM-hypointensities            65.5556    18.4525    33.0000   101.0000    68.0000 
    117. 

  117.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  40  85       211      210.5  Optic-Chiasm                      73.1706    18.7616    18.0000   105.0000    87.0000 
    120. 

  120.  41 251       694      694.3  CC_Posterior                     104.3789     7.1738    74.0000   124.0000    50.0000 
    121. 

  121.  42 252       315      315.0  CC_Mid_Posterior                  98.7538    12.5791    26.0000   117.0000    91.0000 
    122. 

  122.  43 253       378      378.2  CC_Central                        99.1039    10.4542    31.0000   117.0000    86.0000 
    123. 

  123.  44 254       455      454.6  CC_Mid_Anterior                  100.6146     7.0230    73.0000   120.0000    47.0000 
    124. 

  124.  45 255       838      837.9  CC_Anterior                      101.9269    10.2270    36.0000   122.0000    86.0000 
    125.