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recon-all.env

recon-all.env 3.5 KB
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  1. Thu Aug  8 10:53:42 CEST 2013
    2. 

  2. FREESURFER_HOME /opt/freesurfer/5.3.0
    3. 

  3. Actual FREESURFER_HOME /opt/freesurfer/5.3.0
    4. 

  4. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub001
    5. 

  5. setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    6. 

  6. -i /home/data/exppsy/forrest_gump/openfmri.org/sub001/anatomy/highres001.nii.gz -cw256 -all -T2 /home/data/exppsy/forrest_gump/openfmri.org/sub001/anatomy/other/t2w001.nii.gz -T2pial -subjid sub001 -sd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    7. 

  7. Linux snake1 2.6.32-5-amd64 #1 SMP Fri May 10 08:43:19 UTC 2013 x86_64 GNU/Linux
    8. 

  8. 

  9. cputime      unlimited
    10. 

  10. filesize     unlimited
    11. 

  11. datasize     unlimited
    12. 

  12. stacksize    unlimited
    13. 

  13. coredumpsize 0 kbytes
    14. 

  14. memoryuse    unlimited
    15. 

  15. vmemoryuse   unlimited
    16. 

  16. descriptors  1024 
    17. 

  17. memorylocked 64 kbytes
    18. 

  18. maxproc      unlimited
    19. 

  19. maxlocks     unlimited
    20. 

  20. maxsignal    16382 
    21. 

  21. maxmessage   819200 
    22. 

  22. maxnice      0 
    23. 

  23. maxrtprio    0 
    24. 

  24. maxrttime    unlimited
    25. 

  25. 

  26. POSSUMDIR=/usr/share/fsl/5.0
    27. 

  27. LANGUAGE=en_US:en
    28. 

  28. _CONDOR_ANCESTOR_22355=30619:1375952021:3784000005
    29. 

  29. USER=fkaule
    30. 

  30. SSH_CLIENT=141.44.98.28 55777 22
    31. 

  31. MAIL=/var/mail/fkaule
    32. 

  32. MSM_PRODUCT=MSM
    33. 

  33. _CONDOR_ANCESTOR_30619=30620:1375952021:2800043373
    34. 

  34. LD_LIBRARY_PATH=/usr/lib/fsl/5.0
    35. 

  35. SHLVL=2
    36. 

  36. OLDPWD=/home
    37. 

  37. CONDOR_ID=40988.0
    38. 

  38. _CONDOR_MACHINE_AD=/var/lib/condor/execute/dir_30619/.machine.ad
    39. 

  39. HOME=/home/fkaule
    40. 

  40. SSH_TTY=/dev/pts/10
    41. 

  41. XDG_SESSION_COOKIE=fce1b605eb98d6b0f3e0b7ad000005bf-1375944552.163769-1862872819
    42. 

  42. MINC_LIB_DIR=/opt/freesurfer/5.3.0/mni/lib
    43. 

  43. FREESURFER_HOME=/opt/freesurfer/5.3.0
    44. 

  44. MINC_BIN_DIR=/opt/freesurfer/5.3.0/mni/bin
    45. 

  45. _CONDOR_JOB_PIDS=
    46. 

  46. FSLDIR=/usr/share/fsl/5.0
    47. 

  47. CONDOR_PARENT_ID=medusa:19365:1375951932
    48. 

  48. FUNCTIONALS_DIR=/opt/freesurfer/5.3.0/sessions
    49. 

  49. TMPDIR=/var/lib/condor/execute/dir_30619
    50. 

  50. _CONDOR_JOB_IWD=/home/data/exppsy/forrest_gump
    51. 

  51. LOGNAME=fkaule
    52. 

  52. FSLMULTIFILEQUIT=TRUE
    53. 

  53. FSLTCLSH=/usr/bin/tclsh
    54. 

  54. TEMP=/var/lib/condor/execute/dir_30619
    55. 

  55. _=/usr/bin/ipython
    56. 

  56. FSFAST_HOME=/opt/freesurfer/5.3.0/fsfast
    57. 

  57. TERM=xterm
    58. 

  58. FSLMACHINELIST=
    59. 

  59. _JAVA_OPTIONS=-Xmx256m
    60. 

  60. PATH=/opt/freesurfer/5.3.0/bin:/opt/freesurfer/5.3.0/fsfast/bin:/opt/freesurfer/5.3.0/tktools:/opt/freesurfer/5.3.0/mni/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/usr/lib/fsl/5.0
    61. 

  61. OS=Linux
    62. 

  62. _CONDOR_DAGMAN_LOG=/home/data/exppsy/forrest_gump/pipe_tmp/metaflow_fs/batch/workflow-f6ef0e4c-d7a4-4a37-a0a9-c223ed5b1f93.dag.dagman.out
    63. 

  63. PERL5LIB=/opt/freesurfer/5.3.0/mni/lib/perl5/5.8.5
    64. 

  64. FSLOUTPUTTYPE=NIFTI_GZ
    65. 

  65. DISPLAY=:1
    66. 

  66. MNI_DIR=/opt/freesurfer/5.3.0/mni
    67. 

  67. LANG=C
    68. 

  68. MNI_PERL5LIB=/opt/freesurfer/5.3.0/mni/lib/perl5/5.8.5
    69. 

  69. LOCAL_DIR=/opt/freesurfer/5.3.0/local
    70. 

  70. FSLBROWSER=/etc/alternatives/x-www-browser
    71. 

  71. TMP=/var/lib/condor/execute/dir_30619
    72. 

  72. FS_OVERRIDE=0
    73. 

  73. SSH_AUTH_SOCK=/tmp/ssh-YmVJB30651/agent.30651
    74. 

  74. FSLWISH=/usr/bin/wish
    75. 

  75. FSLREMOTECALL=
    76. 

  76. SHELL=/bin/bash
    77. 

  77. _CONDOR_ANCESTOR_7302=7421:1360325385:4217277112
    78. 

  78. _CONDOR_SLOT=slot1_2
    79. 

  79. MSM_HOME=/usr/local/MegaRAID Storage Manager
    80. 

  80. _CONDOR_ANCESTOR_7421=19365:1375951932:2149059971
    81. 

  81. _CONDOR_ANCESTOR_2570=22355:1374656871:26809704
    82. 

  82. FMRI_ANALYSIS_DIR=/opt/freesurfer/5.3.0/fsfast
    83. 

  83. FSF_OUTPUT_FORMAT=nii.gz
    84. 

  84. MNI_DATAPATH=/opt/freesurfer/5.3.0/mni/data
    85. 

  85. PWD=/home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub001
    86. 

  86. SSH_CONNECTION=141.44.98.28 55777 141.44.17.54 22
    87. 

  87. SUBJECTS_DIR=/home/data/exppsy/forrest_gump/openfmri.org/freesurfer
    88. 

  88. _CONDOR_MAX_DAGMAN_LOG=0
    89. 

  89. _CONDOR_JOB_AD=/var/lib/condor/execute/dir_30619/.job.ad
    90. 

  90. FSLLOCKDIR=
    91. 

  91. _CONDOR_SCRATCH_DIR=/var/lib/condor/execute/dir_30619
    92. 

  92. FIX_VERTEX_AREA=
    93. 

  93. NLSPATH=/usr/share/locale/%L/LC_MESSAGES/%N.cat
    94. 

  94. HOSTTYPE=x86_64-linux
    95. 

  95. VENDOR=unknown
    96. 

  96. OSTYPE=linux
    97. 

  97. MACHTYPE=x86_64
    98. 

  98. GROUP=fkaule
    99. 

  99. HOST=snake1
    100. 

  100. REMOTEHOST=
    101. 

  101. OMP_NUM_THREADS=1
    102. 

  102. REQUIRE_FS_MATCH=0
    103.