recon_checker.ALL.summary.log 22 KB

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  1. ----------------
  2. Mon Aug 12 12:53:23 CEST 2013
  3. ----------------
  4. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  5. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  6. === Processing Subject sub001 ===
  7. Writing subject QA log to:
  8. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub001/scripts/recon_checker.log
  9. ERROR: Recon-all steps missing in subject sub001 status file
  10. sub001 has 0 outliers ...
  11. wm-anat-snr results:
  12. SNR: Anatomical signal-to-noise ratio in white matter
  13. mWM: Mean white matter intensity value
  14. stdWM: Standard deviation of white matter intensity value
  15. voxWM: Total number of white matter voxels in eroded mask
  16. SubjID SNR mWM stdWM voxWM
  17. sub001 16.75 105.82 6.32 55728
  18. Taking snapshots for subject sub001
  19. View your snapshots by opening this file in an internet browser:
  20. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  21. ----------------
  22. Mon Aug 12 12:55:18 CEST 2013
  23. ----------------
  24. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  25. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  26. === Processing Subject sub002 ===
  27. Writing subject QA log to:
  28. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub002/scripts/recon_checker.log
  29. ERROR: Recon-all steps missing in subject sub002 status file
  30. sub002 has 0 outliers ...
  31. wm-anat-snr results:
  32. SNR: Anatomical signal-to-noise ratio in white matter
  33. mWM: Mean white matter intensity value
  34. stdWM: Standard deviation of white matter intensity value
  35. voxWM: Total number of white matter voxels in eroded mask
  36. SubjID SNR mWM stdWM voxWM
  37. sub002 17.84 106.04 5.94 55548
  38. Taking snapshots for subject sub002
  39. ----------------
  40. Mon Aug 12 12:59:20 CEST 2013
  41. ----------------
  42. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  43. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  44. === Processing Subject sub001 ===
  45. Writing subject QA log to:
  46. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub001/scripts/recon_checker.log
  47. ERROR: Recon-all steps missing in subject sub001 status file
  48. sub001 has 0 outliers ...
  49. wm-anat-snr results:
  50. SNR: Anatomical signal-to-noise ratio in white matter
  51. mWM: Mean white matter intensity value
  52. stdWM: Standard deviation of white matter intensity value
  53. voxWM: Total number of white matter voxels in eroded mask
  54. SubjID SNR mWM stdWM voxWM
  55. sub001 16.75 105.82 6.32 55728
  56. Taking snapshots for subject sub001
  57. Tkmedit images already exist for subject sub001. Skipping this step...
  58. Tksurfer images already exist for subject sub001. Skipping this step...
  59. View your snapshots by opening this file in an internet browser:
  60. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  61. ----------------
  62. Mon Aug 12 12:59:49 CEST 2013
  63. ----------------
  64. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  65. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  66. === Processing Subject sub002 ===
  67. Writing subject QA log to:
  68. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub002/scripts/recon_checker.log
  69. ERROR: Recon-all steps missing in subject sub002 status file
  70. sub002 has 0 outliers ...
  71. wm-anat-snr results:
  72. SNR: Anatomical signal-to-noise ratio in white matter
  73. mWM: Mean white matter intensity value
  74. stdWM: Standard deviation of white matter intensity value
  75. voxWM: Total number of white matter voxels in eroded mask
  76. SubjID SNR mWM stdWM voxWM
  77. sub002 17.84 106.04 5.94 55548
  78. Taking snapshots for subject sub002
  79. View your snapshots by opening this file in an internet browser:
  80. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  81. ----------------
  82. Mon Aug 12 13:01:45 CEST 2013
  83. ----------------
  84. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  85. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  86. === Processing Subject sub003 ===
  87. Writing subject QA log to:
  88. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub003/scripts/recon_checker.log
  89. ERROR: Recon-all steps missing in subject sub003 status file
  90. sub003 has 0 outliers ...
  91. wm-anat-snr results:
  92. SNR: Anatomical signal-to-noise ratio in white matter
  93. mWM: Mean white matter intensity value
  94. stdWM: Standard deviation of white matter intensity value
  95. voxWM: Total number of white matter voxels in eroded mask
  96. SubjID SNR mWM stdWM voxWM
  97. sub003 16.63 107.31 6.45 28784
  98. Taking snapshots for subject sub003
  99. View your snapshots by opening this file in an internet browser:
  100. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  101. ----------------
  102. Mon Aug 12 13:03:37 CEST 2013
  103. ----------------
  104. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  105. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  106. === Processing Subject sub004 ===
  107. Writing subject QA log to:
  108. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub004/scripts/recon_checker.log
  109. ERROR: Recon-all steps missing in subject sub004 status file
  110. sub004 has 0 outliers ...
  111. wm-anat-snr results:
  112. SNR: Anatomical signal-to-noise ratio in white matter
  113. mWM: Mean white matter intensity value
  114. stdWM: Standard deviation of white matter intensity value
  115. voxWM: Total number of white matter voxels in eroded mask
  116. SubjID SNR mWM stdWM voxWM
  117. sub004 16.91 106.97 6.33 44033
  118. Taking snapshots for subject sub004
  119. View your snapshots by opening this file in an internet browser:
  120. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  121. ----------------
  122. Mon Aug 12 13:05:34 CEST 2013
  123. ----------------
  124. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  125. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  126. === Processing Subject sub005 ===
  127. Writing subject QA log to:
  128. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub005/scripts/recon_checker.log
  129. ERROR: Recon-all steps missing in subject sub005 status file
  130. sub005 has 0 outliers ...
  131. wm-anat-snr results:
  132. SNR: Anatomical signal-to-noise ratio in white matter
  133. mWM: Mean white matter intensity value
  134. stdWM: Standard deviation of white matter intensity value
  135. voxWM: Total number of white matter voxels in eroded mask
  136. SubjID SNR mWM stdWM voxWM
  137. sub005 15.67* 105.21 6.71* 41009 <------
  138. Taking snapshots for subject sub005
  139. View your snapshots by opening this file in an internet browser:
  140. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  141. ----------------
  142. Mon Aug 12 13:07:32 CEST 2013
  143. ----------------
  144. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  145. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  146. === Processing Subject sub006 ===
  147. Writing subject QA log to:
  148. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub006/scripts/recon_checker.log
  149. ERROR: Recon-all steps missing in subject sub006 status file
  150. sub006 has 0 outliers ...
  151. wm-anat-snr results:
  152. SNR: Anatomical signal-to-noise ratio in white matter
  153. mWM: Mean white matter intensity value
  154. stdWM: Standard deviation of white matter intensity value
  155. voxWM: Total number of white matter voxels in eroded mask
  156. SubjID SNR mWM stdWM voxWM
  157. sub006 15.53* 106.14 6.84* 53603 <------
  158. Taking snapshots for subject sub006
  159. View your snapshots by opening this file in an internet browser:
  160. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  161. ----------------
  162. Mon Aug 12 13:09:33 CEST 2013
  163. ----------------
  164. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  165. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  166. === Processing Subject sub007 ===
  167. Writing subject QA log to:
  168. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub007/scripts/recon_checker.log
  169. ERROR: Recon-all steps missing in subject sub007 status file
  170. sub007 has 0 outliers ...
  171. wm-anat-snr results:
  172. SNR: Anatomical signal-to-noise ratio in white matter
  173. mWM: Mean white matter intensity value
  174. stdWM: Standard deviation of white matter intensity value
  175. voxWM: Total number of white matter voxels in eroded mask
  176. SubjID SNR mWM stdWM voxWM
  177. sub007 16.87 106.12 6.29 35766
  178. Taking snapshots for subject sub007
  179. View your snapshots by opening this file in an internet browser:
  180. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  181. ----------------
  182. Mon Aug 12 13:11:42 CEST 2013
  183. ----------------
  184. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  185. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  186. === Processing Subject sub008 ===
  187. Writing subject QA log to:
  188. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub008/scripts/recon_checker.log
  189. ERROR: Recon-all steps missing in subject sub008 status file
  190. sub008 has 0 outliers ...
  191. wm-anat-snr results:
  192. SNR: Anatomical signal-to-noise ratio in white matter
  193. mWM: Mean white matter intensity value
  194. stdWM: Standard deviation of white matter intensity value
  195. voxWM: Total number of white matter voxels in eroded mask
  196. SubjID SNR mWM stdWM voxWM
  197. sub008 17.84 107.05 6.00 42997
  198. Taking snapshots for subject sub008
  199. View your snapshots by opening this file in an internet browser:
  200. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  201. ----------------
  202. Mon Aug 12 13:13:38 CEST 2013
  203. ----------------
  204. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  205. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  206. === Processing Subject sub009 ===
  207. Writing subject QA log to:
  208. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub009/scripts/recon_checker.log
  209. ERROR: Recon-all steps missing in subject sub009 status file
  210. sub009 has 0 outliers ...
  211. wm-anat-snr results:
  212. SNR: Anatomical signal-to-noise ratio in white matter
  213. mWM: Mean white matter intensity value
  214. stdWM: Standard deviation of white matter intensity value
  215. voxWM: Total number of white matter voxels in eroded mask
  216. SubjID SNR mWM stdWM voxWM
  217. sub009 15.71* 104.34 6.64* 29278 <------
  218. Taking snapshots for subject sub009
  219. View your snapshots by opening this file in an internet browser:
  220. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  221. ----------------
  222. Mon Aug 12 13:15:37 CEST 2013
  223. ----------------
  224. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  225. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  226. === Processing Subject sub010 ===
  227. Writing subject QA log to:
  228. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub010/scripts/recon_checker.log
  229. ERROR: Recon-all steps missing in subject sub010 status file
  230. sub010 has 0 outliers ...
  231. wm-anat-snr results:
  232. SNR: Anatomical signal-to-noise ratio in white matter
  233. mWM: Mean white matter intensity value
  234. stdWM: Standard deviation of white matter intensity value
  235. voxWM: Total number of white matter voxels in eroded mask
  236. SubjID SNR mWM stdWM voxWM
  237. sub010 15.94* 107.15 6.72* 19831 <------
  238. Taking snapshots for subject sub010
  239. View your snapshots by opening this file in an internet browser:
  240. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  241. ----------------
  242. Mon Aug 12 13:17:30 CEST 2013
  243. ----------------
  244. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  245. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  246. === Processing Subject sub011 ===
  247. Writing subject QA log to:
  248. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub011/scripts/recon_checker.log
  249. ERROR: Recon-all steps missing in subject sub011 status file
  250. sub011 has 0 outliers ...
  251. wm-anat-snr results:
  252. SNR: Anatomical signal-to-noise ratio in white matter
  253. mWM: Mean white matter intensity value
  254. stdWM: Standard deviation of white matter intensity value
  255. voxWM: Total number of white matter voxels in eroded mask
  256. SubjID SNR mWM stdWM voxWM
  257. sub011 15.72* 107.03 6.81* 61527 <------
  258. Taking snapshots for subject sub011
  259. View your snapshots by opening this file in an internet browser:
  260. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  261. ----------------
  262. Mon Aug 12 13:19:31 CEST 2013
  263. ----------------
  264. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  265. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  266. === Processing Subject sub012 ===
  267. Writing subject QA log to:
  268. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub012/scripts/recon_checker.log
  269. ERROR: Recon-all steps missing in subject sub012 status file
  270. sub012 has 0 outliers ...
  271. wm-anat-snr results:
  272. SNR: Anatomical signal-to-noise ratio in white matter
  273. mWM: Mean white matter intensity value
  274. stdWM: Standard deviation of white matter intensity value
  275. voxWM: Total number of white matter voxels in eroded mask
  276. SubjID SNR mWM stdWM voxWM
  277. sub012 18.00 105.91 5.88 46087
  278. Taking snapshots for subject sub012
  279. View your snapshots by opening this file in an internet browser:
  280. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  281. ----------------
  282. Mon Aug 12 13:21:36 CEST 2013
  283. ----------------
  284. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  285. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  286. === Processing Subject sub013 ===
  287. Writing subject QA log to:
  288. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub013/scripts/recon_checker.log
  289. ERROR: Recon-all steps missing in subject sub013 status file
  290. sub013 has 0 outliers ...
  291. wm-anat-snr results:
  292. SNR: Anatomical signal-to-noise ratio in white matter
  293. mWM: Mean white matter intensity value
  294. stdWM: Standard deviation of white matter intensity value
  295. voxWM: Total number of white matter voxels in eroded mask
  296. SubjID SNR mWM stdWM voxWM
  297. sub013 19.70 107.62 5.46 24729
  298. Taking snapshots for subject sub013
  299. View your snapshots by opening this file in an internet browser:
  300. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  301. ----------------
  302. Mon Aug 12 13:24:25 CEST 2013
  303. ----------------
  304. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  305. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  306. === Processing Subject sub014 ===
  307. Writing subject QA log to:
  308. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub014/scripts/recon_checker.log
  309. ERROR: Recon-all steps missing in subject sub014 status file
  310. sub014 has 0 outliers ...
  311. wm-anat-snr results:
  312. SNR: Anatomical signal-to-noise ratio in white matter
  313. mWM: Mean white matter intensity value
  314. stdWM: Standard deviation of white matter intensity value
  315. voxWM: Total number of white matter voxels in eroded mask
  316. SubjID SNR mWM stdWM voxWM
  317. sub014 18.45 108.11 5.86 24553
  318. Taking snapshots for subject sub014
  319. View your snapshots by opening this file in an internet browser:
  320. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  321. ----------------
  322. Mon Aug 12 13:26:35 CEST 2013
  323. ----------------
  324. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  325. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  326. === Processing Subject sub015 ===
  327. Writing subject QA log to:
  328. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub015/scripts/recon_checker.log
  329. ERROR: Recon-all steps missing in subject sub015 status file
  330. sub015 has 0 outliers ...
  331. wm-anat-snr results:
  332. SNR: Anatomical signal-to-noise ratio in white matter
  333. mWM: Mean white matter intensity value
  334. stdWM: Standard deviation of white matter intensity value
  335. voxWM: Total number of white matter voxels in eroded mask
  336. SubjID SNR mWM stdWM voxWM
  337. sub015 17.31 107.75 6.23 42226
  338. Taking snapshots for subject sub015
  339. View your snapshots by opening this file in an internet browser:
  340. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  341. ----------------
  342. Mon Aug 12 13:28:43 CEST 2013
  343. ----------------
  344. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  345. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  346. === Processing Subject sub016 ===
  347. Writing subject QA log to:
  348. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub016/scripts/recon_checker.log
  349. ERROR: Recon-all steps missing in subject sub016 status file
  350. sub016 has 0 outliers ...
  351. wm-anat-snr results:
  352. SNR: Anatomical signal-to-noise ratio in white matter
  353. mWM: Mean white matter intensity value
  354. stdWM: Standard deviation of white matter intensity value
  355. voxWM: Total number of white matter voxels in eroded mask
  356. SubjID SNR mWM stdWM voxWM
  357. sub016 14.82* 104.47 7.05* 48002 <------
  358. Taking snapshots for subject sub016
  359. View your snapshots by opening this file in an internet browser:
  360. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  361. ----------------
  362. Mon Aug 12 13:30:46 CEST 2013
  363. ----------------
  364. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  365. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  366. === Processing Subject sub017 ===
  367. Writing subject QA log to:
  368. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub017/scripts/recon_checker.log
  369. ERROR: Recon-all steps missing in subject sub017 status file
  370. sub017 has 0 outliers ...
  371. wm-anat-snr results:
  372. SNR: Anatomical signal-to-noise ratio in white matter
  373. mWM: Mean white matter intensity value
  374. stdWM: Standard deviation of white matter intensity value
  375. voxWM: Total number of white matter voxels in eroded mask
  376. SubjID SNR mWM stdWM voxWM
  377. sub017 19.02 107.28 5.64 37008
  378. Taking snapshots for subject sub017
  379. View your snapshots by opening this file in an internet browser:
  380. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  381. ----------------
  382. Mon Aug 12 13:32:41 CEST 2013
  383. ----------------
  384. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  385. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  386. === Processing Subject sub018 ===
  387. Writing subject QA log to:
  388. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub018/scripts/recon_checker.log
  389. ERROR: Recon-all steps missing in subject sub018 status file
  390. sub018 has 0 outliers ...
  391. wm-anat-snr results:
  392. SNR: Anatomical signal-to-noise ratio in white matter
  393. mWM: Mean white matter intensity value
  394. stdWM: Standard deviation of white matter intensity value
  395. voxWM: Total number of white matter voxels in eroded mask
  396. SubjID SNR mWM stdWM voxWM
  397. sub018 16.29 105.69 6.49 43979
  398. Taking snapshots for subject sub018
  399. View your snapshots by opening this file in an internet browser:
  400. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  401. ----------------
  402. Mon Aug 12 13:34:39 CEST 2013
  403. ----------------
  404. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  405. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  406. === Processing Subject sub019 ===
  407. Writing subject QA log to:
  408. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub019/scripts/recon_checker.log
  409. ERROR: Recon-all steps missing in subject sub019 status file
  410. sub019 has 0 outliers ...
  411. wm-anat-snr results:
  412. SNR: Anatomical signal-to-noise ratio in white matter
  413. mWM: Mean white matter intensity value
  414. stdWM: Standard deviation of white matter intensity value
  415. voxWM: Total number of white matter voxels in eroded mask
  416. SubjID SNR mWM stdWM voxWM
  417. sub019 19.97 108.08 5.41 45991
  418. Taking snapshots for subject sub019
  419. View your snapshots by opening this file in an internet browser:
  420. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html
  421. ----------------
  422. Mon Aug 12 13:36:36 CEST 2013
  423. ----------------
  424. SUBJECTS_DIR: /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/
  425. Using file list: /home/fkaule/tools/QAtools_v1.1//default_FOF_FSv5.1
  426. === Processing Subject sub020 ===
  427. Writing subject QA log to:
  428. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer//sub020/scripts/recon_checker.log
  429. ERROR: Recon-all steps missing in subject sub020 status file
  430. sub020 has 0 outliers ...
  431. wm-anat-snr results:
  432. SNR: Anatomical signal-to-noise ratio in white matter
  433. mWM: Mean white matter intensity value
  434. stdWM: Standard deviation of white matter intensity value
  435. voxWM: Total number of white matter voxels in eroded mask
  436. SubjID SNR mWM stdWM voxWM
  437. sub020 19.02 106.05 5.57 43643
  438. Taking snapshots for subject sub020
  439. View your snapshots by opening this file in an internet browser:
  440. /home/data/exppsy/forrest_gump/openfmri.org/freesurfer///home/data/exppsy/forrest_gump/openfmri.org/freesurfer//QA/QA_check.html