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movieloc_motion_correction.submit

movieloc_motion_correction.submit 4.5 KB
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  1. universe = vanilla
    2. 

  2. output = condor_logs/$(CLUSTER).$(PROCESS).out
    3. 

  3. error = condor_logs/$(CLUSTER).$(PROCESS).err
    4. 

  4. log = condor_logs/$(CLUSTER).$(PROCESS).log
    5. 

  5. initialdir = /home/data/psyinf/forrest_gump/collection/aligned
    6. 

  6. getenv = True
    7. 

  7. request_cpus = 1
    8. 

  8. request_memory = 4000
    9. 

  9. should_transfer_files = NO
    10. 

  10. transfer_executable = False
    11. 

  11. executable = code/mcflirt_2stage
    12. 

  12. 

  13. arguments = "src/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-movielocalizer_run-1_bold.nii.gz 3 '-dof 6 -forcescaling -paddingsize 10 -minsampling 1 -bins 256'"
    14. 

  14. queue
    15. 

  15. arguments = "src/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-movielocalizer_run-1_bold.nii.gz 3 '-dof 6 -forcescaling -paddingsize 10 -minsampling 1 -bins 256'"
    16. 

  16. queue
    17. 

  17. arguments = "src/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-movielocalizer_run-1_bold.nii.gz 3 '-dof 6 -forcescaling -paddingsize 10 -minsampling 1 -bins 256'"
    18. 

  18. queue
    19. 

  19. arguments = "src/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-movielocalizer_run-1_bold.nii.gz 3 '-dof 6 -forcescaling -paddingsize 10 -minsampling 1 -bins 256'"
    20. 

  20. queue
    21. 

  21. arguments = "src/phase2/sub-05/ses-localizer/func/sub-05_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-movielocalizer_run-1_bold.nii.gz 3 '-dof 6 -forcescaling -paddingsize 10 -minsampling 1 -bins 256'"
    22. 

  22. queue
    23. 

  23. arguments = "src/phase2/sub-06/ses-localizer/func/sub-06_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-movielocalizer_run-1_bold.nii.gz 3 '-dof 6 -forcescaling -paddingsize 10 -minsampling 1 -bins 256'"
    24. 

  24. queue
    25. 

  25. arguments = "src/phase2/sub-09/ses-localizer/func/sub-09_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-movielocalizer_run-1_bold.nii.gz 3 '-dof 6 -forcescaling -paddingsize 10 -minsampling 1 -bins 256'"
    26. 

  26. queue
    27. 

  27. arguments = "src/phase2/sub-10/ses-localizer/func/sub-10_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-movielocalizer_run-1_bold.nii.gz 3 '-dof 6 -forcescaling -paddingsize 10 -minsampling 1 -bins 256'"
    28. 

  28. queue
    29. 

  29. arguments = "src/phase2/sub-14/ses-localizer/func/sub-14_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-movielocalizer_run-1_bold.nii.gz 3 '-dof 6 -forcescaling -paddingsize 10 -minsampling 1 -bins 256'"
    30. 

  30. queue
    31. 

  31. arguments = "src/phase2/sub-15/ses-localizer/func/sub-15_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-movielocalizer_run-1_bold.nii.gz 3 '-dof 6 -forcescaling -paddingsize 10 -minsampling 1 -bins 256'"
    32. 

  32. queue
    33. 

  33. arguments = "src/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-movielocalizer_run-1_bold.nii.gz 3 '-dof 6 -forcescaling -paddingsize 10 -minsampling 1 -bins 256'"
    34. 

  34. queue
    35. 

  35. arguments = "src/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-movielocalizer_run-1_bold.nii.gz 3 '-dof 6 -forcescaling -paddingsize 10 -minsampling 1 -bins 256'"
    36. 

  36. queue
    37. 

  37. arguments = "src/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-movielocalizer_run-1_bold.nii.gz 3 '-dof 6 -forcescaling -paddingsize 10 -minsampling 1 -bins 256'"
    38. 

  38. queue
    39. 

  39. arguments = "src/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-movielocalizer_run-1_bold.nii.gz 3 '-dof 6 -forcescaling -paddingsize 10 -minsampling 1 -bins 256'"
    40. 

  40. queue
    41. 

  41. arguments = "src/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-movielocalizer_run-1_bold.nii.gz src/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-movielocalizer_run-1_bold.nii.gz 3 '-dof 6 -forcescaling -paddingsize 10 -minsampling 1 -bins 256'"
    42. 

  42. queue
    43.