Align audio-visual movie scan to subject bold3Tp2 templates + code

code/avmovie_motion_correction.submit

@@ -0,0 +1,252 @@
+universe = vanilla
+output = condor_logs/$(CLUSTER).$(PROCESS).out
+error = condor_logs/$(CLUSTER).$(PROCESS).err
+log = condor_logs/$(CLUSTER).$(PROCESS).log
+initialdir = /home/data/psyinf/forrest_gump/collection/aligned
+getenv = True
+request_cpus = 1
+request_memory = 4000
+should_transfer_files = NO
+transfer_executable = False
+executable = /home/data/psyinf/forrest_gump/collection/aligned/code/mcflirt_2stage
+
+arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-1_bold.nii.gz
+queue
+arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-2_bold.nii.gz
+queue
+arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-3_bold.nii.gz
+queue
+arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-4_bold.nii.gz
+queue
+arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-5_bold.nii.gz
+queue
+arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-6_bold.nii.gz
+queue
+arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-7_bold.nii.gz
+queue
+arguments = raw/phase2/sub-01/ses-movie/func/sub-01_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-avmovie_run-8_bold.nii.gz
+queue
+arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-1_bold.nii.gz
+queue
+arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-2_bold.nii.gz
+queue
+arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-3_bold.nii.gz
+queue
+arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-4_bold.nii.gz
+queue
+arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-5_bold.nii.gz
+queue
+arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-6_bold.nii.gz
+queue
+arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-7_bold.nii.gz
+queue
+arguments = raw/phase2/sub-02/ses-movie/func/sub-02_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-avmovie_run-8_bold.nii.gz
+queue
+arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-1_bold.nii.gz
+queue
+arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-2_bold.nii.gz
+queue
+arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-3_bold.nii.gz
+queue
+arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-4_bold.nii.gz
+queue
+arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-5_bold.nii.gz
+queue
+arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-6_bold.nii.gz
+queue
+arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-7_bold.nii.gz
+queue
+arguments = raw/phase2/sub-03/ses-movie/func/sub-03_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-avmovie_run-8_bold.nii.gz
+queue
+arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-1_bold.nii.gz
+queue
+arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-2_bold.nii.gz
+queue
+arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-3_bold.nii.gz
+queue
+arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-4_bold.nii.gz
+queue
+arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-5_bold.nii.gz
+queue
+arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-6_bold.nii.gz
+queue
+arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-7_bold.nii.gz
+queue
+arguments = raw/phase2/sub-04/ses-movie/func/sub-04_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-avmovie_run-8_bold.nii.gz
+queue
+arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-1_bold.nii.gz
+queue
+arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-2_bold.nii.gz
+queue
+arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-3_bold.nii.gz
+queue
+arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-4_bold.nii.gz
+queue
+arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-5_bold.nii.gz
+queue
+arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-6_bold.nii.gz
+queue
+arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-7_bold.nii.gz
+queue
+arguments = raw/phase2/sub-05/ses-movie/func/sub-05_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-avmovie_run-8_bold.nii.gz
+queue
+arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-1_bold.nii.gz
+queue
+arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-2_bold.nii.gz
+queue
+arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-3_bold.nii.gz
+queue
+arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-4_bold.nii.gz
+queue
+arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-5_bold.nii.gz
+queue
+arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-6_bold.nii.gz
+queue
+arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-7_bold.nii.gz
+queue
+arguments = raw/phase2/sub-06/ses-movie/func/sub-06_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-avmovie_run-8_bold.nii.gz
+queue
+arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-1_bold.nii.gz
+queue
+arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-2_bold.nii.gz
+queue
+arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-3_bold.nii.gz
+queue
+arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-4_bold.nii.gz
+queue
+arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-5_bold.nii.gz
+queue
+arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-6_bold.nii.gz
+queue
+arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-7_bold.nii.gz
+queue
+arguments = raw/phase2/sub-09/ses-movie/func/sub-09_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-avmovie_run-8_bold.nii.gz
+queue
+arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-1_bold.nii.gz
+queue
+arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-2_bold.nii.gz
+queue
+arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-3_bold.nii.gz
+queue
+arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-4_bold.nii.gz
+queue
+arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-5_bold.nii.gz
+queue
+arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-6_bold.nii.gz
+queue
+arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-7_bold.nii.gz
+queue
+arguments = raw/phase2/sub-10/ses-movie/func/sub-10_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-avmovie_run-8_bold.nii.gz
+queue
+arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-1_bold.nii.gz
+queue
+arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-2_bold.nii.gz
+queue
+arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-3_bold.nii.gz
+queue
+arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-4_bold.nii.gz
+queue
+arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-5_bold.nii.gz
+queue
+arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-6_bold.nii.gz
+queue
+arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-7_bold.nii.gz
+queue
+arguments = raw/phase2/sub-14/ses-movie/func/sub-14_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-avmovie_run-8_bold.nii.gz
+queue
+arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-1_bold.nii.gz
+queue
+arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-2_bold.nii.gz
+queue
+arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-3_bold.nii.gz
+queue
+arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-4_bold.nii.gz
+queue
+arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-5_bold.nii.gz
+queue
+arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-6_bold.nii.gz
+queue
+arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-7_bold.nii.gz
+queue
+arguments = raw/phase2/sub-15/ses-movie/func/sub-15_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-avmovie_run-8_bold.nii.gz
+queue
+arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-1_bold.nii.gz
+queue
+arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-2_bold.nii.gz
+queue
+arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-3_bold.nii.gz
+queue
+arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-4_bold.nii.gz
+queue
+arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-5_bold.nii.gz
+queue
+arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-6_bold.nii.gz
+queue
+arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-7_bold.nii.gz
+queue
+arguments = raw/phase2/sub-16/ses-movie/func/sub-16_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-avmovie_run-8_bold.nii.gz
+queue
+arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-1_bold.nii.gz
+queue
+arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-2_bold.nii.gz
+queue
+arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-3_bold.nii.gz
+queue
+arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-4_bold.nii.gz
+queue
+arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-5_bold.nii.gz
+queue
+arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-6_bold.nii.gz
+queue
+arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-7_bold.nii.gz
+queue
+arguments = raw/phase2/sub-17/ses-movie/func/sub-17_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-avmovie_run-8_bold.nii.gz
+queue
+arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-1_bold.nii.gz
+queue
+arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-2_bold.nii.gz
+queue
+arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-3_bold.nii.gz
+queue
+arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-4_bold.nii.gz
+queue
+arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-5_bold.nii.gz
+queue
+arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-6_bold.nii.gz
+queue
+arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-7_bold.nii.gz
+queue
+arguments = raw/phase2/sub-18/ses-movie/func/sub-18_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-avmovie_run-8_bold.nii.gz
+queue
+arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-1_bold.nii.gz
+queue
+arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-2_bold.nii.gz
+queue
+arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-3_bold.nii.gz
+queue
+arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-4_bold.nii.gz
+queue
+arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-5_bold.nii.gz
+queue
+arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-6_bold.nii.gz
+queue
+arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-7_bold.nii.gz
+queue
+arguments = raw/phase2/sub-19/ses-movie/func/sub-19_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-avmovie_run-8_bold.nii.gz
+queue
+arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-1_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-1_bold.nii.gz
+queue
+arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-2_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-2_bold.nii.gz
+queue
+arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-3_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-3_bold.nii.gz
+queue
+arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-4_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-4_bold.nii.gz
+queue
+arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-5_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-5_bold.nii.gz
+queue
+arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-6_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-6_bold.nii.gz
+queue
+arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-7_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-7_bold.nii.gz
+queue
+arguments = raw/phase2/sub-20/ses-movie/func/sub-20_ses-movie_task-movie_run-8_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-avmovie_run-8_bold.nii.gz
+queue

code/mcflirt_2stage

@@ -0,0 +1,76 @@
+#!/bin/bash
+# Author: Michael Hanke <michael.hanke@gmail.com>
+# License: MIT
+
+set -e
+set -u
+
+if [ $# -ne 3 ]; then
+  cat << EOT
+This script implements MCFLIRT-based motion correction using an dedicated
+target image. The difference to using MCFLIRT's --reffile option is that
+an initial alignment to the target image can be performed with more
+flexibility. The actual motion correction is performed using the mean
+volume as a reference and a constant subsequent transformation to the
+final target is applied in addition. Each volume is transformed separately
+with a single interpolation/reslicing step that applies the combined
+transformations.
+
+Call this script with at least three arguments
+
+ 1. Input bold time series image
+ 2. Skull-stripped reference image
+ 3. Output filename for the motion-corrected time series image.
+
+(4) Options to FLIRT for the alignment to the target image. Default: "-dof 6"
+
+Examples:
+
+ $0 bold.nii.gz subjtmpl.nii.gz bold_mc.nii.gz "-dof 6 -cost normcorr"
+
+ $0 bold.nii.gz subjtmpl.nii.gz bold_mc.nii.gz "-dof 6 -cost normcorr"
+
+EOT
+  exit 1
+fi
+# fake test for FSL
+ignore=$FSLDIR
+
+inbold=$(readlink -f $1) || true
+ref=$(readlink -f $2) || true
+outbold=$(readlink -f $3)
+initflirtopts=${4:--dof 6}
+
+if [ -z "$inbold" ]; then
+  echo "File not found '$1'"
+  exit 1
+fi
+if [ -z "$ref" ]; then
+  echo "File not found '$2'"
+  exit 1
+fi
+
+outbolddir=$(dirname "${outbold}")
+mkdir -p "$outbolddir"
+
+wdir=$(mktemp -d --suffix=2stagemc)
+trap "rm -rf $wdir" SIGINT SIGTERM
+cd "$wdir"
+
+$FSLDIR/bin/fslmaths "$inbold" -Tmean meanbold -odt input
+$FSLDIR/bin/bet meanbold.nii.gz meanbold_brain -F
+$FSLDIR/bin/flirt ${initflirtopts} -in meanbold_brain -ref "$ref" -omat meanbold2brain.mat
+$FSLDIR/bin/mcflirt -in "$inbold" -reffile meanbold_brain -mats -plots -out mc
+cp mc.par "$($FSLDIR/bin/remove_ext "$outbold")_mcparams.txt"
+for i in mc.mat/MAT*; do convert_xfm -omat mc.mat/tmpl_$(basename $i) -concat meanbold2brain.mat $i; done
+mkdir bold
+$FSLDIR/bin/fslsplit "$inbold" bold/
+mkdir mc
+for i in bold/*.nii*; do
+  bname=$(basename $i)
+  idx=${bname%.nii*}
+  $FSLDIR/bin/flirt -in "$i" -ref "$ref" -applyxfm -init mc.mat/tmpl_MAT_${idx} -out mc/${idx} -interp sinc; done
+$FSLDIR/bin/fslmerge -tr "$outbold" mc/* $(fslval "$inbold" pixdim4)
+
+cd -
+rm -rf "$wdir"

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-1_bold.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/XW/9J/MD5E-s100143756--51b0b4cc7c28205283b6fe9cdbc66306.nii.gz/MD5E-s100143756--51b0b4cc7c28205283b6fe9cdbc66306.nii.gz

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-1_bold_mcparams.txt

@@ -0,0 +1 @@
+../../.git/annex/objects/7X/mK/MD5E-s31915--c38233f0f687f65e8eeaf74be39cacbc.txt/MD5E-s31915--c38233f0f687f65e8eeaf74be39cacbc.txt

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-2_bold.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/1v/jj/MD5E-s98333874--683d40b138a5095dcea3afd64102843f.nii.gz/MD5E-s98333874--683d40b138a5095dcea3afd64102843f.nii.gz

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-2_bold_mcparams.txt

@@ -0,0 +1 @@
+../../.git/annex/objects/kV/Mz/MD5E-s31620--0957af8692a1b919ba2e6a2ad1ce4798.txt/MD5E-s31620--0957af8692a1b919ba2e6a2ad1ce4798.txt

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-3_bold.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Fw/95/MD5E-s96899680--337ad090f96a5dba7c75fa63aea06a48.nii.gz/MD5E-s96899680--337ad090f96a5dba7c75fa63aea06a48.nii.gz

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-3_bold_mcparams.txt

@@ -0,0 +1 @@
+../../.git/annex/objects/W4/W6/MD5E-s31564--14fc95bbecd1ac06bdb012342ea7605c.txt/MD5E-s31564--14fc95bbecd1ac06bdb012342ea7605c.txt

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-4_bold.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/2q/qz/MD5E-s107952955--148587547a6288ed2584a1faaa12394e.nii.gz/MD5E-s107952955--148587547a6288ed2584a1faaa12394e.nii.gz

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-4_bold_mcparams.txt

@@ -0,0 +1 @@
+../../.git/annex/objects/VF/22/MD5E-s35318--93ea6cb16b53cb5e924dcf317efa10a6.txt/MD5E-s35318--93ea6cb16b53cb5e924dcf317efa10a6.txt

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-5_bold.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/6J/p5/MD5E-s102747750--344e3295072fc6ae3dafc908daebef8c.nii.gz/MD5E-s102747750--344e3295072fc6ae3dafc908daebef8c.nii.gz

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-5_bold_mcparams.txt

@@ -0,0 +1 @@
+../../.git/annex/objects/16/W6/MD5E-s33335--658ebdc0af0d445ef190ca7209b2b0ab.txt/MD5E-s33335--658ebdc0af0d445ef190ca7209b2b0ab.txt

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-6_bold.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/M7/WQ/MD5E-s97651508--e2bd43eaaf236c7349116b9ffa649774.nii.gz/MD5E-s97651508--e2bd43eaaf236c7349116b9ffa649774.nii.gz

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-6_bold_mcparams.txt

@@ -0,0 +1 @@
+../../.git/annex/objects/XV/X2/MD5E-s32223--e2c973f6cb89c587b861dda5a9c6600d.txt/MD5E-s32223--e2c973f6cb89c587b861dda5a9c6600d.txt

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-7_bold.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/m2/zJ/MD5E-s120556811--9fbcbf3b1e8ad3c1eeef953dc2990436.nii.gz/MD5E-s120556811--9fbcbf3b1e8ad3c1eeef953dc2990436.nii.gz

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-7_bold_mcparams.txt

@@ -0,0 +1 @@
+../../.git/annex/objects/q8/7M/MD5E-s39456--80aee0c7b72dd9ccc74409a8b5dad03f.txt/MD5E-s39456--80aee0c7b72dd9ccc74409a8b5dad03f.txt

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-8_bold.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Wq/xQ/MD5E-s75303096--dfc044a4209619b5392d5e6c0a252920.nii.gz/MD5E-s75303096--dfc044a4209619b5392d5e6c0a252920.nii.gz

sub-01/in_bold3Tp2/sub-01_task-avmovie_run-8_bold_mcparams.txt

@@ -0,0 +1 @@
+../../.git/annex/objects/Wx/KW/MD5E-s24870--5fff3b9436d2e6c7d993b959699e2b9b.txt/MD5E-s24870--5fff3b9436d2e6c7d993b959699e2b9b.txt

sub-02/in_bold3Tp2/sub-02_task-avmovie_run-1_bold.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/Jm/Jg/MD5E-s111326459--374e25e7bb5266a704bced85a78f9c8e.nii.gz/MD5E-s111326459--374e25e7bb5266a704bced85a78f9c8e.nii.gz

sub-02/in_bold3Tp2/sub-02_task-avmovie_run-1_bold_mcparams.txt

@@ -0,0 +1 @@
+../../.git/annex/objects/kq/4j/MD5E-s32547--882352c598c6ef0c4176dae6fe8da174.txt/MD5E-s32547--882352c598c6ef0c4176dae6fe8da174.txt

sub-02/in_bold3Tp2/sub-02_task-avmovie_run-2_bold.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/F1/X0/MD5E-s109200670--bd77446a97164a76e4cef0300906fe2e.nii.gz/MD5E-s109200670--bd77446a97164a76e4cef0300906fe2e.nii.gz

sub-02/in_bold3Tp2/sub-02_task-avmovie_run-2_bold_mcparams.txt

@@ -0,0 +1 @@
+../../.git/annex/objects/27/9g/MD5E-s31129--de71253b445162197b9e223d25fbabf3.txt/MD5E-s31129--de71253b445162197b9e223d25fbabf3.txt

sub-02/in_bold3Tp2/sub-02_task-avmovie_run-3_bold.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/v0/8K/MD5E-s108298806--a83bfdedaf00db450ad10b9361e0db0d.nii.gz/MD5E-s108298806--a83bfdedaf00db450ad10b9361e0db0d.nii.gz

sub-02/in_bold3Tp2/sub-02_task-avmovie_run-3_bold_mcparams.txt

@@ -0,0 +1 @@
+../../.git/annex/objects/mm/W4/MD5E-s32045--f2ed918849dd41e1f95f80e689973c96.txt/MD5E-s32045--f2ed918849dd41e1f95f80e689973c96.txt

sub-02/in_bold3Tp2/sub-02_task-avmovie_run-4_bold.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/q9/M3/MD5E-s121016724--2c6a9ec9eeb5ef63a30b51a13cfe5182.nii.gz/MD5E-s121016724--2c6a9ec9eeb5ef63a30b51a13cfe5182.nii.gz

sub-02/in_bold3Tp2/sub-02_task-avmovie_run-4_bold_mcparams.txt

@@ -0,0 +1 @@
+../../.git/annex/objects/Z9/9F/MD5E-s34967--2a3f936469ae98141074deaf899494f5.txt/MD5E-s34967--2a3f936469ae98141074deaf899494f5.txt

sub-02/in_bold3Tp2/sub-02_task-avmovie_run-5_bold.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/5V/gX/MD5E-s114853454--3192fd1bc10694fdfc885be73c9a2c95.nii.gz/MD5E-s114853454--3192fd1bc10694fdfc885be73c9a2c95.nii.gz

sub-02/in_bold3Tp2/sub-02_task-avmovie_run-5_bold_mcparams.txt

@@ -0,0 +1 @@
+../../.git/annex/objects/K0/MG/MD5E-s33111--e0782991d480c7f8659b17458c246b4c.txt/MD5E-s33111--e0782991d480c7f8659b17458c246b4c.txt

sub-02/in_bold3Tp2/sub-02_task-avmovie_run-6_bold.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/mM/FJ/MD5E-s109529877--a2ebc0be8570345b01f9825892f7c19c.nii.gz/MD5E-s109529877--a2ebc0be8570345b01f9825892f7c19c.nii.gz

sub-02/in_bold3Tp2/sub-02_task-avmovie_run-6_bold_mcparams.txt

@@ -0,0 +1 @@
+../../.git/annex/objects/71/fW/MD5E-s31494--80dfe8d4d56a5ab3ce69606657de015b.txt/MD5E-s31494--80dfe8d4d56a5ab3ce69606657de015b.txt

sub-02/in_bold3Tp2/sub-02_task-avmovie_run-7_bold.nii.gz

@@ -0,0 +1 @@
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+../../.git/annex/objects/fP/12/MD5E-s83987075--380a69319de9958807b7814b19d1aeea.nii.gz/MD5E-s83987075--380a69319de9958807b7814b19d1aeea.nii.gz

sub-06/in_bold3Tp2/sub-06_task-avmovie_run-8_bold_mcparams.txt

@@ -0,0 +1 @@
+../../.git/annex/objects/33/v0/MD5E-s24444--f4ffc3b35928c55ae1755fe2d9d1ae1f.txt/MD5E-s24444--f4ffc3b35928c55ae1755fe2d9d1ae1f.txt

sub-09/in_bold3Tp2/sub-09_task-avmovie_run-1_bold.nii.gz

@@ -0,0 +1 @@
+../../.git/annex/objects/PJ/08/MD5E-s104034136--9ea7df1dfe9d53a80d69ac6aed9b8a9e.nii.gz/MD5E-s104034136--9ea7df1dfe9d53a80d69ac6aed9b8a9e.nii.gz