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Align movielocalizer to subject bold3Tp2 template + code

Michael Hanke 8 years ago
parent
d0ac3dabef
commit
2c0b79d95d
19 changed files with 60 additions and 0 deletions
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  1. 42 0
      code/movieloc_motion_correction.submit
  2. 1 0
      sub-01/in_bold3Tp2/sub-01_task-movielocalizer_run-1_bold.nii.gz
  3. 1 0
      sub-01/in_bold3Tp2/sub-01_task-movielocalizer_run-1_bold_mcparams.txt
  4. 1 0
      sub-02/in_bold3Tp2/sub-02_task-movielocalizer_run-1_bold.nii.gz
  5. 1 0
      sub-02/in_bold3Tp2/sub-02_task-movielocalizer_run-1_bold_mcparams.txt
  6. 1 0
      sub-03/in_bold3Tp2/sub-03_task-movielocalizer_run-1_bold.nii.gz
  7. 1 0
      sub-03/in_bold3Tp2/sub-03_task-movielocalizer_run-1_bold_mcparams.txt
  8. 1 0
      sub-04/in_bold3Tp2/sub-04_task-movielocalizer_run-1_bold.nii.gz
  9. 1 0
      sub-04/in_bold3Tp2/sub-04_task-movielocalizer_run-1_bold_mcparams.txt
  10. 1 0
      sub-05/in_bold3Tp2/sub-05_task-movielocalizer_run-1_bold.nii.gz
  11. 1 0
      sub-05/in_bold3Tp2/sub-05_task-movielocalizer_run-1_bold_mcparams.txt
  12. 1 0
      sub-06/in_bold3Tp2/sub-06_task-movielocalizer_run-1_bold.nii.gz
  13. 1 0
      sub-06/in_bold3Tp2/sub-06_task-movielocalizer_run-1_bold_mcparams.txt
  14. 1 0
      sub-09/in_bold3Tp2/sub-09_task-movielocalizer_run-1_bold.nii.gz
  15. 1 0
      sub-09/in_bold3Tp2/sub-09_task-movielocalizer_run-1_bold_mcparams.txt
  16. 1 0
      sub-10/in_bold3Tp2/sub-10_task-movielocalizer_run-1_bold.nii.gz
  17. 1 0
      sub-10/in_bold3Tp2/sub-10_task-movielocalizer_run-1_bold_mcparams.txt
  18. 1 0
      sub-20/in_bold3Tp2/sub-20_task-movielocalizer_run-1_bold.nii.gz
  19. 1 0
      sub-20/in_bold3Tp2/sub-20_task-movielocalizer_run-1_bold_mcparams.txt

+ 42 - 0
code/movieloc_motion_correction.submit
View File 

@@ -0,0 +1,42 @@
 
+universe = vanilla
 
+output = condor_logs/$(CLUSTER).$(PROCESS).out
 
+error = condor_logs/$(CLUSTER).$(PROCESS).err
 
+log = condor_logs/$(CLUSTER).$(PROCESS).log
 
+initialdir = /home/data/psyinf/forrest_gump/collection/aligned
 
+getenv = True
 
+request_cpus = 1
 
+request_memory = 4000
 
+should_transfer_files = NO
 
+transfer_executable = False
 
+executable = /home/data/psyinf/forrest_gump/collection/aligned/code/mcflirt_2stage
 
+
 
+arguments = raw/phase2/sub-01/ses-localizer/func/sub-01_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-01/bold3Tp2/brain.nii.gz sub-01/in_bold3Tp2/sub-01_task-movielocalizer_run-1_bold.nii.gz
 
+queue
 
+arguments = raw/phase2/sub-02/ses-localizer/func/sub-02_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-02/bold3Tp2/brain.nii.gz sub-02/in_bold3Tp2/sub-02_task-movielocalizer_run-1_bold.nii.gz
 
+queue
 
+arguments = raw/phase2/sub-03/ses-localizer/func/sub-03_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-03/bold3Tp2/brain.nii.gz sub-03/in_bold3Tp2/sub-03_task-movielocalizer_run-1_bold.nii.gz
 
+queue
 
+arguments = raw/phase2/sub-04/ses-localizer/func/sub-04_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-04/bold3Tp2/brain.nii.gz sub-04/in_bold3Tp2/sub-04_task-movielocalizer_run-1_bold.nii.gz
 
+queue
 
+arguments = raw/phase2/sub-05/ses-localizer/func/sub-05_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-05/bold3Tp2/brain.nii.gz sub-05/in_bold3Tp2/sub-05_task-movielocalizer_run-1_bold.nii.gz
 
+queue
 
+arguments = raw/phase2/sub-06/ses-localizer/func/sub-06_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-06/bold3Tp2/brain.nii.gz sub-06/in_bold3Tp2/sub-06_task-movielocalizer_run-1_bold.nii.gz
 
+queue
 
+arguments = raw/phase2/sub-09/ses-localizer/func/sub-09_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-09/bold3Tp2/brain.nii.gz sub-09/in_bold3Tp2/sub-09_task-movielocalizer_run-1_bold.nii.gz
 
+queue
 
+arguments = raw/phase2/sub-10/ses-localizer/func/sub-10_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-10/bold3Tp2/brain.nii.gz sub-10/in_bold3Tp2/sub-10_task-movielocalizer_run-1_bold.nii.gz
 
+queue
 
+arguments = raw/phase2/sub-14/ses-localizer/func/sub-14_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-14/bold3Tp2/brain.nii.gz sub-14/in_bold3Tp2/sub-14_task-movielocalizer_run-1_bold.nii.gz
 
+queue
 
+arguments = raw/phase2/sub-15/ses-localizer/func/sub-15_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-15/bold3Tp2/brain.nii.gz sub-15/in_bold3Tp2/sub-15_task-movielocalizer_run-1_bold.nii.gz
 
+queue
 
+arguments = raw/phase2/sub-16/ses-localizer/func/sub-16_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-16/bold3Tp2/brain.nii.gz sub-16/in_bold3Tp2/sub-16_task-movielocalizer_run-1_bold.nii.gz
 
+queue
 
+arguments = raw/phase2/sub-17/ses-localizer/func/sub-17_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-17/bold3Tp2/brain.nii.gz sub-17/in_bold3Tp2/sub-17_task-movielocalizer_run-1_bold.nii.gz
 
+queue
 
+arguments = raw/phase2/sub-18/ses-localizer/func/sub-18_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-18/bold3Tp2/brain.nii.gz sub-18/in_bold3Tp2/sub-18_task-movielocalizer_run-1_bold.nii.gz
 
+queue
 
+arguments = raw/phase2/sub-19/ses-localizer/func/sub-19_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-19/bold3Tp2/brain.nii.gz sub-19/in_bold3Tp2/sub-19_task-movielocalizer_run-1_bold.nii.gz
 
+queue
 
+arguments = raw/phase2/sub-20/ses-localizer/func/sub-20_ses-localizer_task-movielocalizer_run-1_bold.nii.gz raw/tnt/sub-20/bold3Tp2/brain.nii.gz sub-20/in_bold3Tp2/sub-20_task-movielocalizer_run-1_bold.nii.gz
 
+queue

+ 1 - 0
sub-01/in_bold3Tp2/sub-01_task-movielocalizer_run-1_bold.nii.gz
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/vW/xJ/MD5E-s10238617--00b806340c1a63d4ba6190460ecf4b12.nii.gz/MD5E-s10238617--00b806340c1a63d4ba6190460ecf4b12.nii.gz

+ 1 - 0
sub-01/in_bold3Tp2/sub-01_task-movielocalizer_run-1_bold_mcparams.txt
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/66/wZ/MD5E-s3470--66750ff5f7e836c5409013c6151a75c3.txt/MD5E-s3470--66750ff5f7e836c5409013c6151a75c3.txt

+ 1 - 0
sub-02/in_bold3Tp2/sub-02_task-movielocalizer_run-1_bold.nii.gz
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/mj/6z/MD5E-s11678162--8932c61ad82f7b68b216e4f07a59ec81.nii.gz/MD5E-s11678162--8932c61ad82f7b68b216e4f07a59ec81.nii.gz

+ 1 - 0
sub-02/in_bold3Tp2/sub-02_task-movielocalizer_run-1_bold_mcparams.txt
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/K8/jw/MD5E-s3620--82a5b347f2b235c6d7e8a75735c81b05.txt/MD5E-s3620--82a5b347f2b235c6d7e8a75735c81b05.txt

+ 1 - 0
sub-03/in_bold3Tp2/sub-03_task-movielocalizer_run-1_bold.nii.gz
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/zm/70/MD5E-s9450576--dd5fb98bb6f69e6d9080dee11353432b.nii.gz/MD5E-s9450576--dd5fb98bb6f69e6d9080dee11353432b.nii.gz

+ 1 - 0
sub-03/in_bold3Tp2/sub-03_task-movielocalizer_run-1_bold_mcparams.txt
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/WW/V2/MD5E-s3566--12e7ebc1a6e6f3f596c1e46c5856fa57.txt/MD5E-s3566--12e7ebc1a6e6f3f596c1e46c5856fa57.txt

+ 1 - 0
sub-04/in_bold3Tp2/sub-04_task-movielocalizer_run-1_bold.nii.gz
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/VP/GF/MD5E-s10444465--f5f77f7934be1bf17585bfe5e6977b8c.nii.gz/MD5E-s10444465--f5f77f7934be1bf17585bfe5e6977b8c.nii.gz

+ 1 - 0
sub-04/in_bold3Tp2/sub-04_task-movielocalizer_run-1_bold_mcparams.txt
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/1q/kk/MD5E-s3596--2db5bdabf5588dd34026c7873f70e730.txt/MD5E-s3596--2db5bdabf5588dd34026c7873f70e730.txt

+ 1 - 0
sub-05/in_bold3Tp2/sub-05_task-movielocalizer_run-1_bold.nii.gz
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/0F/1g/MD5E-s11141094--dbc08c4c0383015557a147d1040a87fc.nii.gz/MD5E-s11141094--dbc08c4c0383015557a147d1040a87fc.nii.gz

+ 1 - 0
sub-05/in_bold3Tp2/sub-05_task-movielocalizer_run-1_bold_mcparams.txt
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/Z0/M4/MD5E-s3622--a9611dbffe40984a4249f23495254601.txt/MD5E-s3622--a9611dbffe40984a4249f23495254601.txt

+ 1 - 0
sub-06/in_bold3Tp2/sub-06_task-movielocalizer_run-1_bold.nii.gz
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/74/v1/MD5E-s12271176--db9afd13a3c04cad414283eac65424a4.nii.gz/MD5E-s12271176--db9afd13a3c04cad414283eac65424a4.nii.gz

+ 1 - 0
sub-06/in_bold3Tp2/sub-06_task-movielocalizer_run-1_bold_mcparams.txt
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/Mw/29/MD5E-s3586--1e5384fbaee27a8079a1c8bee3bc1180.txt/MD5E-s3586--1e5384fbaee27a8079a1c8bee3bc1180.txt

+ 1 - 0
sub-09/in_bold3Tp2/sub-09_task-movielocalizer_run-1_bold.nii.gz
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/pV/JF/MD5E-s10916709--3413b608ca2ca660a525f8f5af2556b5.nii.gz/MD5E-s10916709--3413b608ca2ca660a525f8f5af2556b5.nii.gz

+ 1 - 0
sub-09/in_bold3Tp2/sub-09_task-movielocalizer_run-1_bold_mcparams.txt
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/Zw/17/MD5E-s3577--dc444912e2fb9eb5544208822d96c5af.txt/MD5E-s3577--dc444912e2fb9eb5544208822d96c5af.txt

+ 1 - 0
sub-10/in_bold3Tp2/sub-10_task-movielocalizer_run-1_bold.nii.gz
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/g4/49/MD5E-s9013051--c759f0d7141e92f93f81f31144084fec.nii.gz/MD5E-s9013051--c759f0d7141e92f93f81f31144084fec.nii.gz

+ 1 - 0
sub-10/in_bold3Tp2/sub-10_task-movielocalizer_run-1_bold_mcparams.txt
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/86/kQ/MD5E-s3565--b8c63eaff8775fbd0f4ea81a730ab3aa.txt/MD5E-s3565--b8c63eaff8775fbd0f4ea81a730ab3aa.txt

+ 1 - 0
sub-20/in_bold3Tp2/sub-20_task-movielocalizer_run-1_bold.nii.gz
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/mg/1W/MD5E-s10118226--ab2c21ee16b8c98a9b46b20c59114ab7.nii.gz/MD5E-s10118226--ab2c21ee16b8c98a9b46b20c59114ab7.nii.gz

+ 1 - 0
sub-20/in_bold3Tp2/sub-20_task-movielocalizer_run-1_bold_mcparams.txt
View File 

@@ -0,0 +1 @@
 
+../../.git/annex/objects/4Z/4f/MD5E-s3597--cb69b30664af0a0b62152926ad73b7a6.txt/MD5E-s3597--cb69b30664af0a0b62152926ad73b7a6.txt