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- Metadata-Version: 2.1
- Name: neo
- Version: 0.9.0
- Summary: Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
- Home-page: https://neuralensemble.org/neo
- Author: Neo authors and contributors
- Author-email: samuel.garcia@cnrs.fr
- License: BSD-3-Clause
- Description: ===
- Neo
- ===
-
- Neo is a Python package for working with electrophysiology data in Python, together
- with support for reading a wide range of neurophysiology file formats, including
- Spike2, NeuroExplorer, AlphaOmega, Axon, Blackrock, Plexon, Tdt, and support for
- writing to a subset of these formats plus non-proprietary formats including HDF5.
-
- The goal of Neo is to improve interoperability between Python tools for
- analyzing, visualizing and generating electrophysiology data by providing a common,
- shared object model. In order to be as lightweight a dependency as possible,
- Neo is deliberately limited to represention of data, with no functions for data
- analysis or visualization.
-
- Neo is used by a number of other software tools, including
- SpykeViewer_ (data analysis and visualization), Elephant_ (data analysis),
- the G-node_ suite (databasing), PyNN_ (simulations), tridesclous_ (spike sorting)
- and ephyviewer_ (data visualization).
- OpenElectrophy_ (data analysis and visualization) uses an older version of neo.
-
- Neo implements a hierarchical data model well adapted to intracellular and
- extracellular electrophysiology and EEG data with support for multi-electrodes
- (for example tetrodes). Neo's data objects build on the quantities package,
- which in turn builds on NumPy by adding support for physical dimensions. Thus
- Neo objects behave just like normal NumPy arrays, but with additional metadata,
- checks for dimensional consistency and automatic unit conversion.
-
- A project with similar aims but for neuroimaging file formats is `NiBabel`_.
-
- Code status
- -----------
-
- .. image:: https://travis-ci.org/NeuralEnsemble/python-neo.png?branch=master
- :target: https://travis-ci.org/NeuralEnsemble/python-neo
- :alt: Unit Test Status (TravisCI)
- .. image:: https://circleci.com/gh/NeuralEnsemble/python-neo.svg?style=svg
- :target: https://circleci.com/gh/NeuralEnsemble/python-neo
- :alt: Unit Test Status (CircleCI)
- .. image:: https://coveralls.io/repos/NeuralEnsemble/python-neo/badge.png
- :target: https://coveralls.io/r/NeuralEnsemble/python-neo
- :alt: Unit Test Coverage
- .. image:: https://requires.io/github/NeuralEnsemble/python-neo/requirements.png?branch=master
- :target: https://requires.io/github/NeuralEnsemble/python-neo/requirements/?branch=master
- :alt: Requirements Status
-
- More information
- ----------------
-
- - Home page: http://neuralensemble.org/neo
- - Mailing list: https://groups.google.com/forum/?fromgroups#!forum/neuralensemble
- - Documentation: http://neo.readthedocs.io/
- - Bug reports: https://github.com/NeuralEnsemble/python-neo/issues
-
- For installation instructions, see doc/source/install.rst
-
- To cite Neo in publications, see CITATION.txt
-
- :copyright: Copyright 2010-2020 by the Neo team, see doc/source/authors.rst.
- :license: 3-Clause Revised BSD License, see LICENSE.txt for details.
-
- Funding
- -------
-
- Development of PyNN has been partially funded by the European Union Sixth Framework Program (FP6) under
- grant agreement FETPI-015879 (FACETS), by the European Union Seventh Framework Program (FP7/2007-2013)
- under grant agreements no. 269921 (BrainScaleS) and no. 604102 (HBP),
- and by the European Union’s Horizon 2020 Framework Programme for
- Research and Innovation under the Specific Grant Agreements No. 720270 (Human Brain Project SGA1),
- No. 785907 (Human Brain Project SGA2) and No. 945539 (Human Brain Project SGA3).
-
- .. _OpenElectrophy: https://github.com/OpenElectrophy/OpenElectrophy
- .. _Elephant: http://neuralensemble.org/elephant
- .. _G-node: http://www.g-node.org/
- .. _Neuroshare: http://neuroshare.org/
- .. _SpykeViewer: https://spyke-viewer.readthedocs.org/en/latest/
- .. _NiBabel: http://nipy.sourceforge.net/nibabel/
- .. _PyNN: http://neuralensemble.org/PyNN
- .. _quantities: http://pypi.python.org/pypi/quantities
- .. _`NeuralEnsemble mailing list`: http://groups.google.com/group/neuralensemble
- .. _`issue tracker`: https://github.c
- .. _tridesclous: https://github.com/tridesclous/tridesclous
- .. _ephyviewer: https://github.com/NeuralEnsemble/ephyviewer
-
- Platform: UNKNOWN
- Classifier: Development Status :: 4 - Beta
- Classifier: Intended Audience :: Science/Research
- Classifier: License :: OSI Approved :: BSD License
- Classifier: Natural Language :: English
- Classifier: Operating System :: OS Independent
- Classifier: Programming Language :: Python :: 3
- Classifier: Programming Language :: Python :: 3.6
- Classifier: Programming Language :: Python :: 3.7
- Classifier: Programming Language :: Python :: 3.8
- Classifier: Programming Language :: Python :: 3 :: Only
- Classifier: Topic :: Scientific/Engineering
- Requires-Python: >=3.6
- Provides-Extra: tiffio
- Provides-Extra: hdf5io
- Provides-Extra: neomatlabio
- Provides-Extra: kwikio
- Provides-Extra: igorproio
- Provides-Extra: stimfitio
- Provides-Extra: nixio
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