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Elephant - Electrophysiology Analysis Toolkit

Elephant package analyses all sorts of neurophysiological data: spike trains, LFP, analog signals. The input-output data format is either Neo, Quantity or Numpy array.

More Information

Documentation: https://elephant.readthedocs.io/en/latest/
Mailing list: https://groups.google.com/group/neuralensemble

Visualization of Elephant analysis objects

Viziphant package (https://github.com/INM-6/viziphant) is developed by Elephant team for plotting and visualization of the output of Elephant functions in a few lines of code.

License

Modified BSD License, see LICENSE.txt for details.

Copyright

:copyright: 2014-2020 by the Elephant team.

Acknowledgments

See acknowledgments.

Citation

See citations.

datacite.yml
Title	Massively parallel multi-electrode recordings of macaque motor cortex during an instructed delayed reach-to-grasp task
Authors	Brochier,Thomas;Institut de Neurosciences de la Timone (INT), UMR 7289, CNRS – Aix Marseille Université, Marseille, France;orcid.org/0000-0001-6948-1234 Zehl,Lyuba;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA BRAIN Institute I, Jülich Research Centre, Jülich, Germany;orcid.org/0000-0002-5947-9939 Hao,Yaoyao;Institut de Neurosciences de la Timone (INT), UMR 7289, CNRS – Aix Marseille Université, Marseille, France;orcid.org/0000-0002-9390-4660 Duret,Margaux;Institut de Neurosciences de la Timone (INT), UMR 7289, CNRS – Aix Marseille Université, Marseille, France;orcid.org/0000-0002-6557-748X Sprenger,Julia;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA BRAIN Institute I, Jülich Research Centre, Jülich, Germany;orcid.org/0000-0002-9986-7477 Denker,Michael;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA BRAIN Institute I, Jülich Research Centre, Jülich, Germany;orcid.org/0000-0003-1255-7300 Grün,Sonja;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA BRAIN Institute I, Jülich Research Centre, Jülich, Germany;orcid.org/0000-0003-2829-2220 Riehle,Alexa;Institut de Neurosciences de la Timone (INT), UMR 7289, CNRS – Aix Marseille Université, Marseille, France
Description	We provide two electrophysiological datasets recorded via a 10-by-10 multi-electrode array chronically implanted in the motor cortex of two macaque monkeys during an instructed delayed reach-to-grasp task. The datasets contain the continuous measure of extracellular potentials at each electrode sampled at 30 kHz, the local field potentials sampled at 1 kHz and the timing of the online and offline extracted spike times. It also includes the timing of several task and behavioral events recorded along the electrophysiological data. Finally, the datasets provide a complete set of metadata structured in a standardized format. These metadata allow easy access to detailed information about the datasets such as the settings of the recording hardware, the array specifications, the location of the implant in the motor cortex, information about the monkeys, or the offline spike sorting.
License	CC-BY (http://creativecommons.org/licenses/by/4.0/)
References	Brochier, T., Zehl, L., Hao, Y., Duret, M., Sprenger, J., Denker, M., Grün, S. & Riehle, A. (2018). Massively parallel recordings in macaque motor cortex during an instructed delayed reach-to-grasp task, Scientific Data, 5, 180055. [] (IsPartOf) Zehl, L., Jaillet, F., Stoewer, A., Grewe, J., Sobolev, A., Wachtler, T., … Grün, S. (2016). Handling Metadata in a Neurophysiology Laboratory. Frontiers in Neuroinformatics, 10, 26. [] (HasMetadata) Riehle, A., Wirtssohn, S., Grün, S., & Brochier, T. (2013). Mapping the spatio-temporal structure of motor cortical LFP and spiking activities during reach-to-grasp movements. Frontiers in Neural Circuits, 7, 48 [] (HasMetadata)
Funding	Helmholtz Association, Supercomputing and Modeling for the Human Brain EU, EU.604102 EU, EU.720270 DFG, DFG.GR 1753/4-2 DFG, DFG.DE 2175/2-1 RIKEN-CNRS, Collaborative Research Agreement ANR, GRASP CNRS, PEPS CNRS, Neuro_IC2010 DAAD LIA Vision for Action
Keywords	Neuroscience Electrophysiology Utah Array Spikes Local Field Potential Macaque Motor Cortex
Resource Type	Dataset

README.md