multielectrode_grasp/code/python-neo/neo/test/iotest/test_pickleio.py

# -*- coding: utf-8 -*-
"""
Tests of the neo.io.pickleio.PickleIO class
"""

# needed for python 3 compatibility
from __future__ import absolute_import, division

import os

import unittest

import numpy as np
import quantities as pq

from neo.core import Block, Segment, AnalogSignal, SpikeTrain, Unit, Epoch, Event, ChannelIndex, \
    IrregularlySampledSignal
from neo.io import PickleIO
from numpy.testing import assert_array_equal
from neo.test.tools import assert_arrays_equal, assert_file_contents_equal
from neo.test.iotest.common_io_test import BaseTestIO

NCELLS = 5


class CommonTestPickleIO(BaseTestIO, unittest.TestCase):
    ioclass = PickleIO


class TestPickleIO(unittest.TestCase):
    def test__issue_285(self):
        # Spiketrain
        train = SpikeTrain([3, 4, 5] * pq.s, t_stop=10.0)
        unit = Unit()
        train.unit = unit
        unit.spiketrains.append(train)

        epoch = Epoch(np.array([0, 10, 20]),
                      np.array([2, 2, 2]),
                      np.array(["a", "b", "c"]),
                      units="ms")

        blk = Block()
        seg = Segment()
        seg.spiketrains.append(train)
        seg.epochs.append(epoch)
        epoch.segment = seg
        blk.segments.append(seg)

        reader = PickleIO(filename="blk.pkl")
        reader.write(blk)

        reader = PickleIO(filename="blk.pkl")
        r_blk = reader.read_block()
        r_seg = r_blk.segments[0]
        self.assertIsInstance(r_seg.spiketrains[0].unit, Unit)
        self.assertIsInstance(r_seg.epochs[0], Epoch)
        os.remove('blk.pkl')

        # Epoch
        epoch = Epoch(times=np.arange(0, 30, 10) * pq.s,
                      durations=[10, 5, 7] * pq.ms,
                      labels=np.array(['btn0', 'btn1', 'btn2'], dtype='S'))
        epoch.segment = Segment()
        blk = Block()
        seg = Segment()
        seg.epochs.append(epoch)
        blk.segments.append(seg)

        reader = PickleIO(filename="blk.pkl")
        reader.write(blk)

        reader = PickleIO(filename="blk.pkl")
        r_blk = reader.read_block()
        r_seg = r_blk.segments[0]
        self.assertIsInstance(r_seg.epochs[0].segment, Segment)
        os.remove('blk.pkl')

        # Event
        event = Event(np.arange(0, 30, 10) * pq.s,
                      labels=np.array(['trig0', 'trig1', 'trig2'], dtype='S'))
        event.segment = Segment()

        blk = Block()
        seg = Segment()
        seg.events.append(event)
        blk.segments.append(seg)

        reader = PickleIO(filename="blk.pkl")
        reader.write(blk)

        reader = PickleIO(filename="blk.pkl")
        r_blk = reader.read_block()
        r_seg = r_blk.segments[0]
        self.assertIsInstance(r_seg.events[0].segment, Segment)
        os.remove('blk.pkl')

        # IrregularlySampledSignal
        signal = IrregularlySampledSignal(
            [0.0, 1.23, 6.78], [1, 2, 3], units='mV', time_units='ms')
        signal.segment = Segment()

        blk = Block()
        seg = Segment()
        seg.irregularlysampledsignals.append(signal)
        blk.segments.append(seg)
        blk.segments[0].block = blk

        reader = PickleIO(filename="blk.pkl")
        reader.write(blk)

        reader = PickleIO(filename="blk.pkl")
        r_blk = reader.read_block()
        r_seg = r_blk.segments[0]
        self.assertIsInstance(r_seg.irregularlysampledsignals[0].segment, Segment)
        os.remove('blk.pkl')


if __name__ == '__main__':
    unittest.main()