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ephy_testing_data_backup
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spykingcircus
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spykingcircus_example0
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recording.log

recording.log 39 KB
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  1. 2020-12-17 14:20:09,179 DEBUG    [circus.shared.parser] Creating a Circus Parser for datafile /net/bs-filesvr01/export/group/hierlemann/Temp/Alessio/make_test_sorted_data/sorting_output/spykingcircus/recording.npy
    2. 

  2. 2020-12-17 14:20:09,183 DEBUG    [circus.shared.probes] Reading the probe file /net/bs-filesvr01/export/group/hierlemann/Temp/Alessio/make_test_sorted_data/sorting_output/spykingcircus/probe.prb
    3. 

  3. 2020-12-17 14:20:09,186 DEBUG    [circus.shared.parser] Cluster not detected, so using global /tmp folder
    4. 

  4. 2020-12-17 14:20:09,186 DEBUG    [circus.shared.parser] Hanning filtering is activated
    5. 

  5. 2020-12-17 14:20:09,186 DEBUG    [circus.shared.parser] Trying to read file /net/bs-filesvr01/export/group/hierlemann/Temp/Alessio/make_test_sorted_data/sorting_output/spykingcircus/recording.npy as numpy
    6. 

  6. 2020-12-17 14:20:09,186 DEBUG    [circus.files.datafile] sampling_rate is read from the params with a value of 32000.0
    7. 

  7. 2020-12-17 14:20:09,187 DEBUG    [circus.files.datafile] dtype_offset is not set and has the default value of auto
    8. 

  8. 2020-12-17 14:20:09,187 DEBUG    [circus.files.datafile] gain is not set and has the default value of 1.0
    9. 

  9. 2020-12-17 14:20:09,211 DEBUG    [circus.files.datafile] nb_channels is read from the header with a value of 32
    10. 

  10. 2020-12-17 14:20:09,211 DEBUG    [circus.files.datafile] data_dtype is read from the header with a value of float32
    11. 

  11. 2020-12-17 14:20:09,211 DEBUG    [circus.files.datafile] data type offset for float32 is automatically set to 0
    12. 

  12. 2020-12-17 14:20:09,211 DEBUG    [circus.shared.parser] Changing all values in the param depending on the rate
    13. 

  13. 2020-12-17 14:20:09,212 DEBUG    [circus.shared.parser] Trying to read file /net/bs-filesvr01/export/group/hierlemann/Temp/Alessio/make_test_sorted_data/sorting_output/spykingcircus/recording.npy as numpy
    14. 

  14. 2020-12-17 14:20:09,212 DEBUG    [circus.files.datafile] sampling_rate is read from the params with a value of 32000.0
    15. 

  15. 2020-12-17 14:20:09,212 DEBUG    [circus.files.datafile] dtype_offset is not set and has the default value of auto
    16. 

  16. 2020-12-17 14:20:09,212 DEBUG    [circus.files.datafile] gain is not set and has the default value of 1.0
    17. 

  17. 2020-12-17 14:20:09,214 DEBUG    [circus.files.datafile] nb_channels is read from the header with a value of 32
    18. 

  18. 2020-12-17 14:20:09,214 DEBUG    [circus.files.datafile] data_dtype is read from the header with a value of float32
    19. 

  19. 2020-12-17 14:20:09,214 DEBUG    [circus.files.datafile] data type offset for float32 is automatically set to 0
    20. 

  20. 2020-12-17 14:20:09,215 INFO     [circus.shared.files] Number of recorded channels : 32
    21. 

  21. 2020-12-17 14:20:09,215 INFO     [circus.shared.files] Number of analyzed channels : 32
    22. 

  22. 2020-12-17 14:20:09,215 INFO     [circus.shared.files] File format                 : NUMPY
    23. 

  23. 2020-12-17 14:20:09,215 INFO     [circus.shared.files] Data type                   : float32
    24. 

  24. 2020-12-17 14:20:09,215 INFO     [circus.shared.files] Sampling rate               : 32 kHz
    25. 

  25. 2020-12-17 14:20:09,215 INFO     [circus.shared.files] Duration of the recording   : 0 min 10 s 0 ms
    26. 

  26. 2020-12-17 14:20:09,215 INFO     [circus.shared.files] Width of the templates      : 3 ms
    27. 

  27. 2020-12-17 14:20:09,215 INFO     [circus.shared.files] Spatial radius considered   : 100 um
    28. 

  28. 2020-12-17 14:20:09,215 INFO     [circus.shared.files] Threshold crossing          : negative
    29. 

  29. 2020-12-17 14:20:09,216 DEBUG    [circus.shared.mpi] MPI detected: ('MPICH', (3, 3, 2))
    30. 

  30. 2020-12-17 14:20:18,460 DEBUG    [circus.filtering] Initializing the filtering step...
    31. 

  31. 2020-12-17 14:20:18,461 DEBUG    [circus.filtering] Reading the input file...
    32. 

  32. 2020-12-17 14:20:18,461 DEBUG    [circus.shared.parser] Trying to read file /net/bs-filesvr01/export/group/hierlemann/Temp/Alessio/make_test_sorted_data/sorting_output/spykingcircus/recording.npy as numpy
    33. 

  33. 2020-12-17 14:20:18,461 DEBUG    [circus.files.datafile] sampling_rate is read from the params with a value of 32000.0
    34. 

  34. 2020-12-17 14:20:18,462 DEBUG    [circus.files.datafile] dtype_offset is not set and has the default value of auto
    35. 

  35. 2020-12-17 14:20:18,462 DEBUG    [circus.files.datafile] gain is not set and has the default value of 1.0
    36. 

  36. 2020-12-17 14:20:18,544 DEBUG    [circus.files.datafile] nb_channels is read from the header with a value of 32
    37. 

  37. 2020-12-17 14:20:18,545 DEBUG    [circus.files.datafile] data_dtype is read from the header with a value of float32
    38. 

  38. 2020-12-17 14:20:18,545 DEBUG    [circus.files.datafile] data type offset for float32 is automatically set to 0
    39. 

  39. 2020-12-17 14:20:18,545 DEBUG    [circus.shared.parser] Changing all values in the param depending on the rate
    40. 

  40. 2020-12-17 14:20:18,550 DEBUG    [circus.shared.parser] Writing value Started for noedits:filter_done
    41. 

  41. 2020-12-17 14:20:18,558 DEBUG    [circus.shared.mpi] Setting data chunk size to 30 second
    42. 

  42. 2020-12-17 14:20:18,558 DEBUG    [circus.files.datafile] There are 0 chunks of size 960000
    43. 

  43. 2020-12-17 14:20:18,558 DEBUG    [circus.files.datafile] The last chunk has size 320000
    44. 

  44. 2020-12-17 14:20:18,564 DEBUG    [circus.filtering] Filtering with a Butterworth filter (order 3) in [300, 15200] Hz
    45. 

  45. 2020-12-17 14:20:21,060 DEBUG    [circus.shared.parser] Writing value True for noedits:filter_done
    46. 

  46. 2020-12-17 14:20:21,418 DEBUG    [circus.shared.mpi] MPI detected: ('MPICH', (3, 3, 2))
    47. 

  47. 2020-12-17 14:20:24,863 DEBUG    [circus.shared.mpi] Setting data chunk size to 30 second
    48. 

  48. 2020-12-17 14:20:24,870 DEBUG    [circus.whitening] Analyzing data to get whitening matrices and thresholds...
    49. 

  49. 2020-12-17 14:20:24,870 DEBUG    [circus.files.datafile] There are 0 chunks of size 960000
    50. 

  50. 2020-12-17 14:20:24,870 DEBUG    [circus.files.datafile] The last chunk has size 320000
    51. 

  51. 2020-12-17 14:20:24,871 DEBUG    [circus.shared.parser] Trying to read file /net/bs-filesvr01/export/group/hierlemann/Temp/Alessio/make_test_sorted_data/sorting_output/spykingcircus/recording.npy as numpy
    52. 

  52. 2020-12-17 14:20:24,871 DEBUG    [circus.files.datafile] sampling_rate is read from the params with a value of 32000.0
    53. 

  53. 2020-12-17 14:20:24,871 DEBUG    [circus.files.datafile] dtype_offset is not set and has the default value of auto
    54. 

  54. 2020-12-17 14:20:24,871 DEBUG    [circus.files.datafile] gain is not set and has the default value of 1.0
    55. 

  55. 2020-12-17 14:20:24,876 DEBUG    [circus.files.datafile] nb_channels is read from the header with a value of 32
    56. 

  56. 2020-12-17 14:20:24,876 DEBUG    [circus.files.datafile] data_dtype is read from the header with a value of float32
    57. 

  57. 2020-12-17 14:20:24,877 DEBUG    [circus.files.datafile] data type offset for float32 is automatically set to 0
    58. 

  58. 2020-12-17 14:20:24,877 DEBUG    [circus.whitening] Too much cores, automatically resizing the data chunks
    59. 

  59. 2020-12-17 14:20:24,877 DEBUG    [circus.files.datafile] There are 16 chunks of size 20000
    60. 

  60. 2020-12-17 14:20:24,877 DEBUG    [circus.files.datafile] The last chunk has size 0
    61. 

  61. 2020-12-17 14:20:25,318 DEBUG    [circus.whitening] Found 0.625s without spikes for whitening matrices...
    62. 

  62. 2020-12-17 14:20:25,321 DEBUG    [circus.whitening] Because of whitening, need to recompute the thresholds...
    63. 

  63. 2020-12-17 14:20:25,418 DEBUG    [circus.shared.mpi] Setting data chunk size to 0.625 second
    64. 

  64. 2020-12-17 14:20:25,424 DEBUG    [circus.whitening] Searching spikes to construct the PCA basis...
    65. 

  65. 2020-12-17 14:20:25,425 DEBUG    [circus.files.datafile] There are 16 chunks of size 20000
    66. 

  66. 2020-12-17 14:20:25,425 DEBUG    [circus.files.datafile] The last chunk has size 0
    67. 

  67. 2020-12-17 14:20:25,473 DEBUG    [circus.whitening] Node 8 has collected 42 waveforms
    68. 

  68. 2020-12-17 14:20:25,513 DEBUG    [circus.whitening] Node 6 has collected 35 waveforms
    69. 

  69. 2020-12-17 14:20:25,515 DEBUG    [circus.whitening] Node 5 has collected 34 waveforms
    70. 

  70. 2020-12-17 14:20:25,518 DEBUG    [circus.whitening] Node 10 has collected 34 waveforms
    71. 

  71. 2020-12-17 14:20:25,521 DEBUG    [circus.whitening] Node 11 has collected 38 waveforms
    72. 

  72. 2020-12-17 14:20:25,523 DEBUG    [circus.whitening] Node 9 has collected 41 waveforms
    73. 

  73. 2020-12-17 14:20:25,524 DEBUG    [circus.whitening] Node 4 has collected 41 waveforms
    74. 

  74. 2020-12-17 14:20:25,524 DEBUG    [circus.whitening] Node 3 has collected 40 waveforms
    75. 

  75. 2020-12-17 14:20:25,525 DEBUG    [circus.whitening] Node 7 has collected 43 waveforms
    76. 

  76. 2020-12-17 14:20:25,525 DEBUG    [circus.whitening] Node 1 has collected 42 waveforms
    77. 

  77. 2020-12-17 14:20:25,528 DEBUG    [circus.whitening] Node 13 has collected 47 waveforms
    78. 

  78. 2020-12-17 14:20:25,529 DEBUG    [circus.whitening] Node 2 has collected 48 waveforms
    79. 

  79. 2020-12-17 14:20:25,530 DEBUG    [circus.whitening] Node 14 has collected 50 waveforms
    80. 

  80. 2020-12-17 14:20:25,531 DEBUG    [circus.whitening] Node 15 has collected 49 waveforms
    81. 

  81. 2020-12-17 14:20:25,532 DEBUG    [circus.whitening] Node 12 has collected 50 waveforms
    82. 

  82. 2020-12-17 14:20:25,543 DEBUG    [circus.whitening] Node 0 has collected 48 waveforms
    83. 

  83. 2020-12-17 14:20:25,544 DEBUG    [circus.whitening] Found 682 waveforms over 25600 requested
    84. 

  84. 2020-12-17 14:20:25,575 INFO     [circus.whitening] A basis with 5 dimensions has been built
    85. 

  85. 2020-12-17 14:20:25,575 DEBUG    [circus.whitening] The percentage of variance explained is 0.7755271737933321 for negative spikes
    86. 

  86. 2020-12-17 14:20:25,749 DEBUG    [circus.shared.mpi] MPI detected: ('MPICH', (3, 3, 2))
    87. 

  87. 2020-12-17 14:20:33,052 DEBUG    [circus.shared.mpi] Setting data chunk size to 0.625 second
    88. 

  88. 2020-12-17 14:20:33,076 DEBUG    [circus.files.datafile] There are 16 chunks of size 20000
    89. 

  89. 2020-12-17 14:20:33,076 DEBUG    [circus.files.datafile] The last chunk has size 0
    90. 

  90. 2020-12-17 14:20:33,077 DEBUG    [circus.clustering] Searching isolated random spikes to sample amplitudes...
    91. 

  91. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 5 has collected 47 spikes and rejected 0 spikes
    92. 

  92. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 9 has collected 48 spikes and rejected 0 spikes
    93. 

  93. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 7 has collected 39 spikes and rejected 0 spikes
    94. 

  94. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 1 has collected 34 spikes and rejected 0 spikes
    95. 

  95. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 4 has collected 42 spikes and rejected 0 spikes
    96. 

  96. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 15 has collected 42 spikes and rejected 0 spikes
    97. 

  97. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 6 has collected 46 spikes and rejected 0 spikes
    98. 

  98. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 12 has collected 48 spikes and rejected 0 spikes
    99. 

  99. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 8 has collected 40 spikes and rejected 0 spikes
    100. 

  100. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 0 has collected 47 spikes and rejected 0 spikes
    101. 

  101. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 14 has collected 40 spikes and rejected 0 spikes
    102. 

  102. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 2 has collected 40 spikes and rejected 0 spikes
    103. 

  103. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 3 has collected 35 spikes and rejected 0 spikes
    104. 

  104. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 13 has collected 36 spikes and rejected 0 spikes
    105. 

  105. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 10 has collected 31 spikes and rejected 0 spikes
    106. 

  106. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 5 has ignored 14 noisy spikes
    107. 

  107. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 11 has collected 45 spikes and rejected 0 spikes
    108. 

  108. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 9 has ignored 13 noisy spikes
    109. 

  109. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 7 has ignored 8 noisy spikes
    110. 

  110. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 6 has ignored 8 noisy spikes
    111. 

  111. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 1 has ignored 1 noisy spikes
    112. 

  112. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 4 has ignored 7 noisy spikes
    113. 

  113. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 15 has ignored 12 noisy spikes
    114. 

  114. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 8 has ignored 8 noisy spikes
    115. 

  115. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 12 has ignored 16 noisy spikes
    116. 

  116. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 0 has ignored 7 noisy spikes
    117. 

  117. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 14 has ignored 9 noisy spikes
    118. 

  118. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 13 has ignored 5 noisy spikes
    119. 

  119. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 2 has ignored 6 noisy spikes
    120. 

  120. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 10 has ignored 6 noisy spikes
    121. 

  121. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 3 has ignored 7 noisy spikes
    122. 

  122. 2020-12-17 14:20:33,263 DEBUG    [circus.clustering] Node 11 has ignored 9 noisy spikes
    123. 

  123. 2020-12-17 14:20:33,264 DEBUG    [circus.clustering] Found 660 spikes over 256000 requested
    124. 

  124. 2020-12-17 14:20:33,287 DEBUG    [circus.clustering] Estimating amplitudes distributions...
    125. 

  125. 2020-12-17 14:20:33,289 DEBUG    [circus.clustering] Smart search is actived on channel 5
    126. 

  126. 2020-12-17 14:20:33,289 DEBUG    [circus.clustering] Smart search is actived on channel 8
    127. 

  127. 2020-12-17 14:20:33,289 DEBUG    [circus.clustering] Smart search is actived on channel 21
    128. 

  128. 2020-12-17 14:20:33,289 DEBUG    [circus.clustering] Smart search is actived on channel 6
    129. 

  129. 2020-12-17 14:20:33,289 DEBUG    [circus.clustering] Smart search is actived on channel 10
    130. 

  130. 2020-12-17 14:20:33,289 DEBUG    [circus.clustering] Smart search is actived on channel 9
    131. 

  131. 2020-12-17 14:20:33,290 DEBUG    [circus.clustering] Smart search is actived on channel 24
    132. 

  132. 2020-12-17 14:20:33,290 DEBUG    [circus.clustering] Smart search is actived on channel 3
    133. 

  133. 2020-12-17 14:20:33,290 DEBUG    [circus.clustering] Smart search is actived on channel 22
    134. 

  134. 2020-12-17 14:20:33,291 DEBUG    [circus.clustering] Smart search is actived on channel 19
    135. 

  135. 2020-12-17 14:20:33,291 DEBUG    [circus.clustering] Smart search is actived on channel 2
    136. 

  136. 2020-12-17 14:20:33,291 DEBUG    [circus.clustering] Smart search is actived on channel 1
    137. 

  137. 2020-12-17 14:20:33,291 DEBUG    [circus.clustering] Smart search is actived on channel 13
    138. 

  138. 2020-12-17 14:20:33,291 DEBUG    [circus.clustering] Smart search is actived on channel 14
    139. 

  139. 2020-12-17 14:20:33,291 DEBUG    [circus.clustering] Smart search is actived on channel 23
    140. 

  140. 2020-12-17 14:20:33,291 DEBUG    [circus.clustering] Smart search is actived on channel 11
    141. 

  141. 2020-12-17 14:20:33,292 DEBUG    [circus.clustering] Smart search is actived on channel 30
    142. 

  142. 2020-12-17 14:20:33,298 DEBUG    [circus.clustering] Smart Search disabled on 15 electrodes
    143. 

  143. 2020-12-17 14:20:33,298 DEBUG    [circus.clustering] Smart Search of good isolated spikes for the clustering (1/3)...
    144. 

  144. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 3 found not enough spikes: searching only 35 spikes instead of 16000
    145. 

  145. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 5 found not enough spikes: searching only 47 spikes instead of 16000
    146. 

  146. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 0 found not enough spikes: searching only 47 spikes instead of 16000
    147. 

  147. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 1 found not enough spikes: searching only 34 spikes instead of 16000
    148. 

  148. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 10 found not enough spikes: searching only 31 spikes instead of 16000
    149. 

  149. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 13 found not enough spikes: searching only 36 spikes instead of 16000
    150. 

  150. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 14 found not enough spikes: searching only 40 spikes instead of 16000
    151. 

  151. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 9 found not enough spikes: searching only 48 spikes instead of 16000
    152. 

  152. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 6 found not enough spikes: searching only 46 spikes instead of 16000
    153. 

  153. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 7 found not enough spikes: searching only 39 spikes instead of 16000
    154. 

  154. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 12 found not enough spikes: searching only 48 spikes instead of 16000
    155. 

  155. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 8 found not enough spikes: searching only 40 spikes instead of 16000
    156. 

  156. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 2 found not enough spikes: searching only 40 spikes instead of 16000
    157. 

  157. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 15 found not enough spikes: searching only 42 spikes instead of 16000
    158. 

  158. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 4 found not enough spikes: searching only 42 spikes instead of 16000
    159. 

  159. 2020-12-17 14:20:33,311 DEBUG    [circus.clustering] Node 11 found not enough spikes: searching only 45 spikes instead of 16000
    160. 

  160. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 12 has collected 48 spikes and rejected 0 spikes
    161. 

  161. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 6 has collected 45 spikes and rejected 1 spikes
    162. 

  162. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 2 has collected 40 spikes and rejected 0 spikes
    163. 

  163. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 4 has collected 42 spikes and rejected 1 spikes
    164. 

  164. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 8 has collected 39 spikes and rejected 1 spikes
    165. 

  165. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 0 has collected 46 spikes and rejected 1 spikes
    166. 

  166. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 10 has collected 30 spikes and rejected 1 spikes
    167. 

  167. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 15 has collected 42 spikes and rejected 1 spikes
    168. 

  168. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 9 has collected 48 spikes and rejected 0 spikes
    169. 

  169. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 11 has collected 45 spikes and rejected 0 spikes
    170. 

  170. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 1 has collected 34 spikes and rejected 1 spikes
    171. 

  171. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 14 has collected 38 spikes and rejected 2 spikes
    172. 

  172. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 12 has ignored 15 noisy spikes
    173. 

  173. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 6 has ignored 7 noisy spikes
    174. 

  174. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 10 has ignored 8 noisy spikes
    175. 

  175. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 7 has collected 39 spikes and rejected 0 spikes
    176. 

  176. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 13 has collected 36 spikes and rejected 1 spikes
    177. 

  177. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 2 has ignored 3 noisy spikes
    178. 

  178. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 4 has ignored 5 noisy spikes
    179. 

  179. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 0 has ignored 7 noisy spikes
    180. 

  180. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 8 has ignored 8 noisy spikes
    181. 

  181. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 9 has ignored 14 noisy spikes
    182. 

  182. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 15 has ignored 10 noisy spikes
    183. 

  183. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 1 has ignored 1 noisy spikes
    184. 

  184. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 11 has ignored 9 noisy spikes
    185. 

  185. 2020-12-17 14:20:33,463 DEBUG    [circus.clustering] Node 14 has ignored 9 noisy spikes
    186. 

  186. 2020-12-17 14:20:33,464 DEBUG    [circus.clustering] Node 7 has ignored 8 noisy spikes
    187. 

  187. 2020-12-17 14:20:33,464 DEBUG    [circus.clustering] Node 13 has ignored 6 noisy spikes
    188. 

  188. 2020-12-17 14:20:33,464 DEBUG    [circus.clustering] Node 3 has collected 35 spikes and rejected 1 spikes
    189. 

  189. 2020-12-17 14:20:33,464 DEBUG    [circus.clustering] Node 5 has collected 46 spikes and rejected 1 spikes
    190. 

  190. 2020-12-17 14:20:33,464 DEBUG    [circus.clustering] Node 3 has ignored 8 noisy spikes
    191. 

  191. 2020-12-17 14:20:33,464 DEBUG    [circus.clustering] Node 5 has ignored 15 noisy spikes
    192. 

  192. 2020-12-17 14:20:33,464 DEBUG    [circus.clustering] Found 653 isolated spikes over 256000 requested (12 rejected)
    193. 

  193. 2020-12-17 14:20:33,488 DEBUG    [circus.clustering] Computing density estimations...
    194. 

  194. 2020-12-17 14:20:33,489 DEBUG    [circus.clustering] Node 0 will use temp file /tmp/tmpvkirl4qh.hdf5
    195. 

  195. 2020-12-17 14:20:33,490 DEBUG    [circus.clustering] Node 10 will use temp file /tmp/tmpiiduo4da.hdf5
    196. 

  196. 2020-12-17 14:20:33,490 DEBUG    [circus.clustering] Node 12 will use temp file /tmp/tmpu7v6wdfq.hdf5
    197. 

  197. 2020-12-17 14:20:33,490 DEBUG    [circus.clustering] Node 8 will use temp file /tmp/tmpys4529_s.hdf5
    198. 

  198. 2020-12-17 14:20:33,490 DEBUG    [circus.clustering] Node 6 will use temp file /tmp/tmplo5enr8z.hdf5
    199. 

  199. 2020-12-17 14:20:33,490 DEBUG    [circus.clustering] Node 2 will use temp file /tmp/tmpiadefeq_.hdf5
    200. 

  200. 2020-12-17 14:20:33,490 DEBUG    [circus.clustering] Node 4 will use temp file /tmp/tmp8xubl4ky.hdf5
    201. 

  201. 2020-12-17 14:20:33,490 DEBUG    [circus.clustering] Node 1 will use temp file /tmp/tmpi29lspw3.hdf5
    202. 

  202. 2020-12-17 14:20:33,490 DEBUG    [circus.clustering] Node 9 will use temp file /tmp/tmpb0skuqfi.hdf5
    203. 

  203. 2020-12-17 14:20:33,490 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 12 from 1 neg spikes is nan with 1 dimensions
    204. 

  204. 2020-12-17 14:20:33,490 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 16 from 1 neg spikes is nan with 1 dimensions
    205. 

  205. 2020-12-17 14:20:33,491 DEBUG    [circus.clustering] Node 7 will use temp file /tmp/tmplby5kyyj.hdf5
    206. 

  206. 2020-12-17 14:20:33,491 DEBUG    [circus.clustering] Node 13 will use temp file /tmp/tmpmddqa09t.hdf5
    207. 

  207. 2020-12-17 14:20:33,491 DEBUG    [circus.clustering] Node 5 will use temp file /tmp/tmpmu1173ts.hdf5
    208. 

  208. 2020-12-17 14:20:33,491 DEBUG    [circus.clustering] Node 3 will use temp file /tmp/tmp9ddrjqfi.hdf5
    209. 

  209. 2020-12-17 14:20:33,491 DEBUG    [circus.clustering] Node 11 will use temp file /tmp/tmpggt8txju.hdf5
    210. 

  210. 2020-12-17 14:20:33,491 DEBUG    [circus.clustering] Node 14 will use temp file /tmp/tmpfy5geo_9.hdf5
    211. 

  211. 2020-12-17 14:20:33,491 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 1 from 4 neg spikes is 1 with 4 dimensions
    212. 

  212. 2020-12-17 14:20:33,491 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 8 from 19 neg spikes is 0.797678 with 10 dimensions
    213. 

  213. 2020-12-17 14:20:33,491 DEBUG    [circus.clustering] Node 15 will use temp file /tmp/tmp61m1uj4q.hdf5
    214. 

  214. 2020-12-17 14:20:33,491 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 10 from 54 neg spikes is 0.522232 with 10 dimensions
    215. 

  215. 2020-12-17 14:20:33,491 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 2 from 25 neg spikes is 0.732587 with 10 dimensions
    216. 

  216. 2020-12-17 14:20:33,491 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 9 from 27 neg spikes is 0.68984 with 10 dimensions
    217. 

  217. 2020-12-17 14:20:33,492 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 13 from 10 neg spikes is 1 with 10 dimensions
    218. 

  218. 2020-12-17 14:20:33,492 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 23 from 10 neg spikes is 1 with 10 dimensions
    219. 

  219. 2020-12-17 14:20:33,492 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 11 from 10 neg spikes is 1 with 10 dimensions
    220. 

  220. 2020-12-17 14:20:33,492 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 3 from 4 neg spikes is 1 with 4 dimensions
    221. 

  221. 2020-12-17 14:20:33,492 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 31 from 1 neg spikes is nan with 1 dimensions
    222. 

  222. 2020-12-17 14:20:33,493 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 6 from 111 neg spikes is 0.308454 with 10 dimensions
    223. 

  223. 2020-12-17 14:20:33,493 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 5 from 47 neg spikes is 0.645619 with 10 dimensions
    224. 

  224. 2020-12-17 14:20:33,494 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 19 from 31 neg spikes is 0.659163 with 10 dimensions
    225. 

  225. 2020-12-17 14:20:33,495 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 14 from 27 neg spikes is 0.630693 with 10 dimensions
    226. 

  226. 2020-12-17 14:20:33,496 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 25 from 1 neg spikes is nan with 1 dimensions
    227. 

  227. 2020-12-17 14:20:33,496 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 24 from 49 neg spikes is 0.577031 with 10 dimensions
    228. 

  228. 2020-12-17 14:20:33,499 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 30 from 2 neg spikes is 1 with 2 dimensions
    229. 

  229. 2020-12-17 14:20:33,500 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 21 from 100 neg spikes is 0.559383 with 10 dimensions
    230. 

  230. 2020-12-17 14:20:33,510 DEBUG    [circus.clustering] The variance explained by local PCA on electrode 22 from 119 neg spikes is 0.50882 with 10 dimensions
    231. 

  231. 2020-12-17 14:20:33,525 DEBUG    [circus.clustering] Searching random spikes to refine the clustering (2/3)...
    232. 

  232. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 10 has collected 1 spikes and rejected 0 spikes
    233. 

  233. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 4 has collected 0 spikes and rejected 0 spikes
    234. 

  234. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 1 has collected 0 spikes and rejected 0 spikes
    235. 

  235. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 11 has collected 0 spikes and rejected 0 spikes
    236. 

  236. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 14 has collected 2 spikes and rejected 0 spikes
    237. 

  237. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 2 has collected 0 spikes and rejected 0 spikes
    238. 

  238. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 8 has collected 1 spikes and rejected 0 spikes
    239. 

  239. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 0 has collected 1 spikes and rejected 0 spikes
    240. 

  240. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 12 has collected 0 spikes and rejected 0 spikes
    241. 

  241. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 6 has collected 1 spikes and rejected 0 spikes
    242. 

  242. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 9 has collected 0 spikes and rejected 0 spikes
    243. 

  243. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 15 has collected 0 spikes and rejected 0 spikes
    244. 

  244. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 13 has collected 0 spikes and rejected 0 spikes
    245. 

  245. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 7 has collected 0 spikes and rejected 0 spikes
    246. 

  246. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 5 has collected 1 spikes and rejected 0 spikes
    247. 

  247. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 3 has collected 0 spikes and rejected 0 spikes
    248. 

  248. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 10 has ignored 6 noisy spikes
    249. 

  249. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 12 has ignored 15 noisy spikes
    250. 

  250. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 4 has ignored 6 noisy spikes
    251. 

  251. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 1 has ignored 1 noisy spikes
    252. 

  252. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 11 has ignored 6 noisy spikes
    253. 

  253. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 2 has ignored 4 noisy spikes
    254. 

  254. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 14 has ignored 8 noisy spikes
    255. 

  255. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 0 has ignored 6 noisy spikes
    256. 

  256. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 8 has ignored 8 noisy spikes
    257. 

  257. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 6 has ignored 7 noisy spikes
    258. 

  258. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 13 has ignored 5 noisy spikes
    259. 

  259. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 7 has ignored 7 noisy spikes
    260. 

  260. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 9 has ignored 13 noisy spikes
    261. 

  261. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 15 has ignored 10 noisy spikes
    262. 

  262. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 5 has ignored 13 noisy spikes
    263. 

  263. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Node 3 has ignored 6 noisy spikes
    264. 

  264. 2020-12-17 14:20:33,610 DEBUG    [circus.clustering] Found 7 spikes over 256000 requested
    265. 

  265. 2020-12-17 14:20:33,617 DEBUG    [circus.clustering] Refining density estimations...
    266. 

  266. 2020-12-17 14:20:33,628 DEBUG    [circus.clustering] Searching random spikes to refine the clustering (3/3)...
    267. 

  267. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 12 has collected 0 spikes and rejected 0 spikes
    268. 

  268. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 11 has collected 0 spikes and rejected 0 spikes
    269. 

  269. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 8 has collected 0 spikes and rejected 0 spikes
    270. 

  270. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 2 has collected 0 spikes and rejected 0 spikes
    271. 

  271. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 4 has collected 0 spikes and rejected 0 spikes
    272. 

  272. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 10 has collected 0 spikes and rejected 0 spikes
    273. 

  273. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 1 has collected 0 spikes and rejected 0 spikes
    274. 

  274. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 15 has collected 0 spikes and rejected 0 spikes
    275. 

  275. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 9 has collected 0 spikes and rejected 0 spikes
    276. 

  276. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 0 has collected 0 spikes and rejected 0 spikes
    277. 

  277. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 6 has collected 0 spikes and rejected 0 spikes
    278. 

  278. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 14 has collected 0 spikes and rejected 0 spikes
    279. 

  279. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 12 has ignored 15 noisy spikes
    280. 

  280. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 10 has ignored 6 noisy spikes
    281. 

  281. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 11 has ignored 6 noisy spikes
    282. 

  282. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 8 has ignored 8 noisy spikes
    283. 

  283. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 2 has ignored 4 noisy spikes
    284. 

  284. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 4 has ignored 6 noisy spikes
    285. 

  285. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 1 has ignored 1 noisy spikes
    286. 

  286. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 9 has ignored 13 noisy spikes
    287. 

  287. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 15 has ignored 10 noisy spikes
    288. 

  288. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 0 has ignored 6 noisy spikes
    289. 

  289. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 6 has ignored 7 noisy spikes
    290. 

  290. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 14 has ignored 8 noisy spikes
    291. 

  291. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 7 has collected 0 spikes and rejected 0 spikes
    292. 

  292. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 13 has collected 0 spikes and rejected 0 spikes
    293. 

  293. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 5 has collected 0 spikes and rejected 0 spikes
    294. 

  294. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 3 has collected 0 spikes and rejected 0 spikes
    295. 

  295. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 13 has ignored 5 noisy spikes
    296. 

  296. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 7 has ignored 7 noisy spikes
    297. 

  297. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 5 has ignored 13 noisy spikes
    298. 

  298. 2020-12-17 14:20:33,709 DEBUG    [circus.clustering] Node 3 has ignored 6 noisy spikes
    299. 

  299. 2020-12-17 14:20:33,710 DEBUG    [circus.clustering] Found 0 spikes over 256000 requested
    300. 

  300. 2020-12-17 14:20:33,710 INFO     [circus.clustering] No more spikes in the recording, stop searching
    301. 

  301. 2020-12-17 14:20:33,716 DEBUG    [circus.clustering] Refining density estimations...
    302. 

  302. 2020-12-17 14:20:33,717 DEBUG    [circus.clustering] Node 4: not enough negative spikes on channel 4
    303. 

  303. 2020-12-17 14:20:33,717 DEBUG    [circus.clustering] Node 12: not enough negative spikes on channel 12
    304. 

  304. 2020-12-17 14:20:33,717 DEBUG    [circus.clustering] Running density-based clustering...
    305. 

  305. 2020-12-17 14:20:33,717 DEBUG    [circus.clustering] Node 12: not enough negative spikes on channel 28
    306. 

  306. 2020-12-17 14:20:33,717 DEBUG    [circus.clustering] Node 4: not enough negative spikes on channel 20
    307. 

  307. 2020-12-17 14:20:33,717 DEBUG    [circus.clustering] Node 7: not enough negative spikes on channel 7
    308. 

  308. 2020-12-17 14:20:33,717 DEBUG    [circus.clustering] Node 15: not enough negative spikes on channel 15
    309. 

  309. 2020-12-17 14:20:33,717 DEBUG    [circus.clustering] Node 15: not enough negative spikes on channel 31
    310. 

  310. 2020-12-17 14:20:33,717 DEBUG    [circus.clustering] Node 0: not enough negative spikes on channel 0
    311. 

  311. 2020-12-17 14:20:33,718 DEBUG    [circus.clustering] Node 0: not enough negative spikes on channel 16
    312. 

  312. 2020-12-17 14:20:33,722 DEBUG    [circus.clustering] Node 3: 1-0 negative templates on channel 3 from 4 spikes: []
    313. 

  313. 2020-12-17 14:20:33,723 DEBUG    [circus.clustering] Node 1: 1-0 negative templates on channel 1 from 4 spikes: []
    314. 

  314. 2020-12-17 14:20:33,723 DEBUG    [circus.clustering] Node 1: not enough negative spikes on channel 17
    315. 

  315. 2020-12-17 14:20:33,724 DEBUG    [circus.clustering] Node 7: 1-0 negative templates on channel 23 from 10 spikes: []
    316. 

  316. 2020-12-17 14:20:33,728 DEBUG    [circus.clustering] Node 13: 1-0 negative templates on channel 13 from 10 spikes: []
    317. 

  317. 2020-12-17 14:20:33,728 DEBUG    [circus.clustering] Node 13: not enough negative spikes on channel 29
    318. 

  318. 2020-12-17 14:20:33,728 DEBUG    [circus.clustering] Node 10: 1-0 negative templates on channel 10 from 54 spikes: [54]
    319. 

  319. 2020-12-17 14:20:33,728 DEBUG    [circus.clustering] Node 10: not enough negative spikes on channel 26
    320. 

  320. 2020-12-17 14:20:33,730 DEBUG    [circus.clustering] Node 11: 1-0 negative templates on channel 11 from 10 spikes: []
    321. 

  321. 2020-12-17 14:20:33,730 DEBUG    [circus.clustering] Node 11: not enough negative spikes on channel 27
    322. 

  322. 2020-12-17 14:20:33,730 DEBUG    [circus.clustering] Node 5: 1-0 negative templates on channel 5 from 47 spikes: [47]
    323. 

  323. 2020-12-17 14:20:33,733 DEBUG    [circus.clustering] Node 8: 1-0 negative templates on channel 8 from 19 spikes: []
    324. 

  324. 2020-12-17 14:20:33,733 DEBUG    [circus.clustering] Node 14: 1-0 negative templates on channel 14 from 27 spikes: [27]
    325. 

  325. 2020-12-17 14:20:33,734 DEBUG    [circus.clustering] Node 9: 1-0 negative templates on channel 9 from 27 spikes: [27]
    326. 

  326. 2020-12-17 14:20:33,734 DEBUG    [circus.clustering] Node 9: not enough negative spikes on channel 25
    327. 

  327. 2020-12-17 14:20:33,735 DEBUG    [circus.clustering] Node 14: 1-0 negative templates on channel 30 from 2 spikes: []
    328. 

  328. 2020-12-17 14:20:33,736 DEBUG    [circus.clustering] Node 2: 1-0 negative templates on channel 2 from 25 spikes: [25]
    329. 

  329. 2020-12-17 14:20:33,736 DEBUG    [circus.clustering] Node 2: not enough negative spikes on channel 18
    330. 

  330. 2020-12-17 14:20:33,744 DEBUG    [circus.clustering] Node 5: 1-0 negative templates on channel 21 from 100 spikes: [100]
    331. 

  331. 2020-12-17 14:20:33,744 DEBUG    [circus.clustering] Node 6: 1-0 negative templates on channel 6 from 111 spikes: [111]
    332. 

  332. 2020-12-17 14:20:33,745 DEBUG    [circus.clustering] Node 3: 1-0 negative templates on channel 19 from 31 spikes: [31]
    333. 

  333. 2020-12-17 14:20:33,757 DEBUG    [circus.clustering] Node 8: 1-0 negative templates on channel 24 from 49 spikes: [49]
    334. 

  334. 2020-12-17 14:20:33,767 DEBUG    [circus.clustering] Node 6: 1-0 negative templates on channel 22 from 119 spikes: [119]
    335. 

  335. 2020-12-17 14:20:33,768 INFO     [circus.clustering] Number of clusters found : 10
    336. 

  336. 2020-12-17 14:20:33,768 INFO     [circus.clustering] Number of local merges   : 0 (method nd-bhatta, param 2)
    337. 

  337. 2020-12-17 14:20:33,768 INFO     [circus.clustering] Not enough spikes gathered: -put safety_space=False?
    338. 

  338. 2020-12-17 14:20:33,769 INFO     [circus.clustering]                             -remove smart_search?
    339. 

  339. 2020-12-17 14:20:33,769 DEBUG    [circus.clustering] Estimating the templates with the median-raw procedure ...
    340. 

  340. 2020-12-17 14:20:33,769 DEBUG    [circus.clustering] Templates will be smoothed by Savitzky Golay Filtering ...
    341. 

  341. 2020-12-17 14:20:34,680 DEBUG    [circus.clustering] Merging similar templates...
    342. 

  342. 2020-12-17 14:20:34,723 DEBUG    [circus.shared.files] Overlaps computed, now gathering data by MPI
    343. 

  343. 2020-12-17 14:20:35,164 DEBUG    [circus.shared.algorithms] Node 0 is slicing templates
    344. 

  344. 2020-12-17 14:20:35,236 DEBUG    [circus.shared.algorithms] Node 0 is slicing clusters
    345. 

  345. 2020-12-17 14:20:35,407 DEBUG    [circus.clustering] Removing mixtures of templates...
    346. 

  346. 2020-12-17 14:20:35,468 DEBUG    [circus.shared.files] Overlaps computed, now gathering data by MPI
    347. 

  347. 2020-12-17 14:20:36,159 INFO     [circus.clustering] Number of global merges    : 1
    348. 

  348. 2020-12-17 14:20:36,159 INFO     [circus.clustering] Number of mixtures removed : 0
    349. 

  349. 2020-12-17 14:20:36,159 DEBUG    [circus.clustering] Computing optimal amplitudes for the templates...
    350. 

  350. 2020-12-17 14:20:37,252 DEBUG    [circus.shared.files] Pre-computing the overlaps of templates...
    351. 

  351. 2020-12-17 14:20:37,263 DEBUG    [circus.shared.files] Overlaps computed, now gathering data by MPI
    352. 

  352. 2020-12-17 14:20:37,564 DEBUG    [circus.shared.files] Overlaps gathered, now computing overlaps/lags
    353. 

  353. 2020-12-17 14:20:38,311 DEBUG    [circus.shared.mpi] MPI detected: ('MPICH', (3, 3, 2))
    354. 

  354. 2020-12-17 14:20:41,718 DEBUG    [circus.shared.mpi] Setting data chunk size to 0.1 second
    355. 

  355. 2020-12-17 14:20:41,723 DEBUG    [circus.fitting] nb_chances set automatically to 1
    356. 

  356. 2020-12-17 14:20:41,841 DEBUG    [circus.fitting] Here comes the SpyKING CIRCUS using 16 CPUs and 9 templates...
    357. 

  357. 2020-12-17 14:20:41,842 DEBUG    [circus.shared.utils] Removing .data for directory /net/bs-filesvr01/export/group/hierlemann/Temp/Alessio/make_test_sorted_data/sorting_output/spykingcircus/recording
    358. 

  358. 2020-12-17 14:20:41,846 DEBUG    [circus.files.datafile] There are 100 chunks of size 3200
    359. 

  359. 2020-12-17 14:20:41,846 DEBUG    [circus.files.datafile] The last chunk has size 0
    360. 

  360. 2020-12-17 14:20:42,082 DEBUG    [circus.shared.parser] Trying to read file /net/bs-filesvr01/export/group/hierlemann/Temp/Alessio/make_test_sorted_data/sorting_output/spykingcircus/recording.npy as numpy
    361. 

  361. 2020-12-17 14:20:42,082 DEBUG    [circus.files.datafile] sampling_rate is read from the params with a value of 32000.0
    362. 

  362. 2020-12-17 14:20:42,082 DEBUG    [circus.files.datafile] dtype_offset is not set and has the default value of auto
    363. 

  363. 2020-12-17 14:20:42,083 DEBUG    [circus.files.datafile] gain is not set and has the default value of 1.0
    364. 

  364. 2020-12-17 14:20:42,085 DEBUG    [circus.files.datafile] nb_channels is read from the header with a value of 32
    365. 

  365. 2020-12-17 14:20:42,085 DEBUG    [circus.files.datafile] data_dtype is read from the header with a value of float32
    366. 

  366. 2020-12-17 14:20:42,085 DEBUG    [circus.files.datafile] data type offset for float32 is automatically set to 0
    367. 

  367. 2020-12-17 14:20:42,087 DEBUG    [circus.shared.files] Gathering spikes from 16 nodes...
    368. 

  368. 2020-12-17 14:20:42,137 INFO     [circus.shared.files] Number of spikes fitted : 795
    369. 

  369. 2020-12-17 14:20:42,162 DEBUG    [circus.shared.utils] Removing .data for directory /net/bs-filesvr01/export/group/hierlemann/Temp/Alessio/make_test_sorted_data/sorting_output/spykingcircus/recording
    370. 

  370. 2020-12-17 14:20:42,340 DEBUG    [circus.shared.mpi] MPI detected: ('MPICH', (3, 3, 2))
    371. 

  371. 2020-12-17 14:20:50,527 DEBUG    [circus.merging] Launching the merging GUI...
    372. 

  372. 2020-12-17 14:20:50,608 INFO     [circus.shared.gui] Automatic merging with a threshold of 0.75
    373. 

  373. 2020-12-17 14:20:50,609 DEBUG    [circus.shared.gui] Updating the data...
    374. 

  374. 2020-12-17 14:20:50,612 INFO     [circus.shared.gui] No pairs were found given the parameters
    375. 

  375. 2020-12-17 14:20:50,618 DEBUG    [circus.shared.algorithms] Node 0 is slicing templates
    376. 

  376. 2020-12-17 14:20:50,692 DEBUG    [circus.shared.algorithms] Node 0 is slicing clusters
    377. 

  377. 2020-12-17 14:20:50,850 INFO     [circus.shared.gui] We kept 9 templates out of 9 after merging
    378. 

  378. 2020-12-17 14:20:50,850 INFO     [circus.shared.gui] As meta merging is still experimental, you need
    379. 

  379. 2020-12-17 14:20:50,850 INFO     [circus.shared.gui] to use the extension option to see its results
    380. 

  380. 2020-12-17 14:20:50,850 INFO     [circus.shared.gui] >> circus-gui-matlab mydata.dat -e merged
    381. 

  381. 2020-12-17 14:20:50,850 INFO     [circus.shared.gui] or
    382. 

  382. 2020-12-17 14:20:50,850 INFO     [circus.shared.gui] >> spyking-circus mydata.dat -m converting -e merged
    383.