Automated_classification_of_stroke_deficit/networks/Cylinder_camera-1-Sebastian_Kloubert-2021-06-15/config.yaml

    # Project definitions (do not edit)
Task: Cylinder_camera-1
scorer: Sebastian_Kloubert
date: Jun15
multianimalproject: false

    # Project path (change when moving around)
project_path: /mnt/DLC/DLC/3D_nets/Cylinder_camera-1-Sebastian_Kloubert-2021-06-15

    # Annotation data set configuration (and individual video cropping parameters)
video_sets:
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T2_3_1_Baseline_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T2_3_1_P3_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T2_3_2_Baseline_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T2_3_2_P3_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T2_3_3_Baseline_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T2_3_3_P3_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T2_4_2_Baseline_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T2_4_2_P3_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T2_5_1_Baseline_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T2_5_1_P3_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T2_6_1_Baseline_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T2_6_1_P3_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T2_6_2_Baseline_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T2_6_2_P3_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T3_23_1_Baseline_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T3_23_1_P3_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T3_23_2_Baseline_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T3_23_2_P3_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T3_23_3_Baseline_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T3_23_3_P3_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T3_24_1_Baseline_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T3_24_1_P3_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T3_24_2_Baseline_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T3_24_2_P3_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T3_24_3_Baseline_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
  /mnt/DLC/DLC/3D_videos/CY/camera-1/PB_T3_24_3_P3_CY_camera-1.mp4:
    crop: 520, 1090, 270, 860
bodyparts:
- snout
- tailbase
- tailtip
- shoulder_right
- elbow_right
- wrist_right
- forepaw_right
- shoulder_left
- elbow_left
- wrist_left
- forepaw_left
- hip_right
- knee_right
- ankle_right
- hindpaw_right
- hip_left
- knee_left
- ankle_left
- hindpaw_left
- cylinder_top
- cylinder_right
- cylinder_bottom
- cylinder_left
start: 0.1
stop: 1
numframes2pick: 10

    # Plotting configuration
skeleton:
- - snout
  - tailbase
- - snout
  - tailtip
- - snout
  - shoulder_right
- - snout
  - shoulder_left
- - tailbase
  - tailtip
- - tailbase
  - hip_right
- - tailbase
  - hip_left
- - shoulder_right
  - elbow_right
- - shoulder_right
  - wrist_right
- - shoulder_right
  - forepaw_right
- - shoulder_right
  - shoulder_left
- - shoulder_right
  - elbow_left
- - shoulder_right
  - hip_right
- - shoulder_right
  - hip_left
- - elbow_right
  - wrist_right
- - elbow_right
  - forepaw_right
- - wrist_right
  - forepaw_right
- - shoulder_left
  - elbow_left
- - shoulder_left
  - wrist_left
- - shoulder_left
  - forepaw_left
- - shoulder_left
  - elbow_right
- - shoulder_left
  - hip_left
- - shoulder_left
  - hip_right
- - elbow_left
  - wrist_left
- - elbow_left
  - forepaw_left
- - wrist_left
  - forepaw_left
- - hip_right
  - knee_right
- - hip_right
  - ankle_right
- - hip_right
  - hindpaw_right
- - hip_right
  - hip_left
- - hip_right
  - knee_left
- - knee_right
  - ankle_right
- - knee_right
  - hindpaw_right
- - ankle_right
  - hindpaw_right
- - hip_left
  - knee_left
- - hip_left
  - ankle_left
- - hip_left
  - hindpaw_left
- - hip_left
  - knee_right
- - knee_left
  - ankle_left
- - knee_left
  - hindpaw_left
- - ankle_left
  - hindpaw_left
- - cylinder_top
  - cylinder_right
- - cylinder_right
  - cylinder_bottom
- - cylinder_bottom
  - cylinder_left
- - cylinder_left
  - cylinder_top
- - cylinder_top
  - cylinder_bottom
- - cylinder_right
  - cylinder_left
skeleton_color: white
pcutoff: 0.6
dotsize: 3
alphavalue: 0.7
colormap: plasma

    # Training,Evaluation and Analysis configuration
TrainingFraction:
- 0.95
iteration: 0
default_net_type: resnet_50
default_augmenter: default
snapshotindex: -1
batch_size: 8

    # Cropping Parameters (for analysis and outlier frame detection)
cropping: true
croppedtraining: false
    #if cropping is true for analysis, then set the values here:
x1: 520
x2: 1090
y1: 270
y2: 860

    # Refinement configuration (parameters from annotation dataset configuration also relevant in this stage)
corner2move2:
- 50
- 50
move2corner: true