[DATALAD RUNCMD] run with nistats and isometric smoothing

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity run /data/MBDU/singularity_images/fitlins_latest_latest-2021-04-20-8c3b682574b9.simg /data/MBDU/nielsond/dccc2019/try_gnode/fitlins_tests/ds003/ds003_fmriprep/sourcedata /data/MBDU/nielsond/dccc2019/try_gnode/fitlins_tests/ds003/nistats_smooth/out dataset -d /data/MBDU/nielsond/dccc2019/try_gnode/fitlins_tests/ds003/ds003_fmriprep/ -m /data/MBDU/nielsond/dccc2019/try_gnode/fitlins_tests/ds003/models/model-001_smdl.json -w /lscratch/12128095/nistats_smooth  --participant-label 01 02 03 --space MNI152NLin2009cAsym --estimator nistats  --n-cpus 8 --mem-gb 8 -vv -s 10.0:l1:iso",
 "dsid": "87b71dea-dec5-4034-9c38-ff4bd27cf5dc",
 "exit": 0,
 "extra_inputs": [],
 "inputs": [],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^

ds003/nistats_smooth/out/fitlins/dataset_description.json

@@ -3,7 +3,7 @@
   "BIDSVersion": "1.1.0",
   "PipelineDescription": {
     "Name": "FitLins",
-    "Version": "0.8.0+155.gaf2460c",
+    "Version": "",
     "CodeURL": "https://github.com/poldracklab/fitlins",
     "Parameters": {
       "bids_dir": "../sourcedata",

ds003/nistats_smooth/out/fitlins/reports/figures/task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-anyWords_stat-F_ortho.png

@@ -1 +1 @@
-../../../../../../.git/annex/objects/VK/jz/MD5E-s159764--25fb91be9cc4e3027e699e3fbbb049d4.png/MD5E-s159764--25fb91be9cc4e3027e699e3fbbb049d4.png
+../../../../../../.git/annex/objects/2v/Jp/MD5E-s160211--be05e44664a978b7ccd73129425441a9.png/MD5E-s160211--be05e44664a978b7ccd73129425441a9.png

ds003/nistats_smooth/out/fitlins/reports/figures/task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-taskVsBaseline_stat-t_ortho.png

@@ -1 +1 @@
-../../../../../../.git/annex/objects/87/6X/MD5E-s173812--8f77042e96d01acab1d200becf61163b.png/MD5E-s173812--8f77042e96d01acab1d200becf61163b.png
+../../../../../../.git/annex/objects/F8/ff/MD5E-s173999--fe3e3d949e94c5cbd6d675927751d020.png/MD5E-s173999--fe3e3d949e94c5cbd6d675927751d020.png

ds003/nistats_smooth/out/fitlins/reports/figures/task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-wordGtPseudo_stat-t_ortho.png

@@ -1 +1 @@
-../../../../../../.git/annex/objects/mZ/KG/MD5E-s179438--6bcf328c1cf629f012f891a89f41488f.png/MD5E-s179438--6bcf328c1cf629f012f891a89f41488f.png
+../../../../../../.git/annex/objects/5z/qq/MD5E-s179744--9715648ee6b8acc40e42ccfd6add2101.png/MD5E-s179744--9715648ee6b8acc40e42ccfd6add2101.png

ds003/nistats_smooth/out/fitlins/reports/model-ds003Model001.html

@@ -167,7 +167,7 @@ summary.heading-2 {
         first are collapsed, but each should be inspected for correctness.
         
         <details open>
-        <summary class="heading-1">Subject: 01, Task: rhymejudgment</summary>
+        <summary class="heading-1">Task: rhymejudgment, Subject: 01</summary>
         <div class="warning">
     The following confounds had NaN values for the first volume: framewise_displacement.
     The mean of non-zero values for the remaining entries was imputed.
@@ -193,7 +193,7 @@ summary.heading-2 {
         
         
         <details>
-        <summary class="heading-1">Subject: 02, Task: rhymejudgment</summary>
+        <summary class="heading-1">Task: rhymejudgment, Subject: 02</summary>
         <div class="warning">
     The following confounds had NaN values for the first volume: framewise_displacement.
     The mean of non-zero values for the remaining entries was imputed.
@@ -233,7 +233,7 @@ summary.heading-2 {
         inspected to ensure no unexpected differences are present.</p>
         
         <details open>
-        <summary class="heading-1">Subject: 01, Task: rhymejudgment</summary>
+        <summary class="heading-1">Task: rhymejudgment, Subject: 01</summary>
         <img src="sub-01/figures/sub-01_task-rhymejudgment_contrasts.svg" />
         </details>
         
@@ -242,7 +242,7 @@ summary.heading-2 {
         
         
         <details>
-        <summary class="heading-1">Subject: 02, Task: rhymejudgment</summary>
+        <summary class="heading-1">Task: rhymejudgment, Subject: 02</summary>
         <img src="sub-02/figures/sub-02_task-rhymejudgment_contrasts.svg" />
         </details>
         
@@ -263,7 +263,7 @@ summary.heading-2 {
         
         <h2>Run level</h2>
         
-        <h3>Subject: 01, Task: rhymejudgment</h3>
+        <h3>Task: rhymejudgment, Subject: 01</h3>
         
         <h4>word &gt; pseudo</h4>
         
@@ -286,7 +286,7 @@ summary.heading-2 {
         
         
         
-        <h3>Subject: 02, Task: rhymejudgment</h3>
+        <h3>Task: rhymejudgment, Subject: 02</h3>
         
         <h4>word &gt; pseudo</h4>
         
@@ -337,70 +337,70 @@ summary.heading-2 {
         
         <h3>Subject: 01, Task: rhymejudgment</h3>
         
+        <h4>word &gt; pseudo</h4>
+        
+        <img src="sub-01/figures/sub-01_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-wordGtPseudo_stat-FEMA_ortho.png" />
+        
+        
         <h4>task vs. baseline</h4>
         
         <img src="sub-01/figures/sub-01_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-taskVsBaseline_stat-FEMA_ortho.png" />
         
         
-        <h4>trial_type.pseudoword</h4>
+        <h4>trial_type.word</h4>
         
         <p> Missing contrast skipped (used: <code>--drop-missing</code>) </p>
         
         
-        <h4>trial_type.word</h4>
+        <h4>trial_type.pseudoword</h4>
         
         <p> Missing contrast skipped (used: <code>--drop-missing</code>) </p>
         
         
-        <h4>word &gt; pseudo</h4>
         
-        <img src="sub-01/figures/sub-01_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-wordGtPseudo_stat-FEMA_ortho.png" />
+        <h3>Subject: 02, Task: rhymejudgment</h3>
         
+        <h4>word &gt; pseudo</h4>
         
+        <img src="sub-02/figures/sub-02_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-wordGtPseudo_stat-FEMA_ortho.png" />
         
-        <h3>Subject: 02, Task: rhymejudgment</h3>
         
         <h4>task vs. baseline</h4>
         
         <img src="sub-02/figures/sub-02_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-taskVsBaseline_stat-FEMA_ortho.png" />
         
         
-        <h4>trial_type.pseudoword</h4>
+        <h4>trial_type.word</h4>
         
         <p> Missing contrast skipped (used: <code>--drop-missing</code>) </p>
         
         
-        <h4>trial_type.word</h4>
+        <h4>trial_type.pseudoword</h4>
         
         <p> Missing contrast skipped (used: <code>--drop-missing</code>) </p>
         
         
-        <h4>word &gt; pseudo</h4>
         
-        <img src="sub-02/figures/sub-02_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-wordGtPseudo_stat-FEMA_ortho.png" />
+        <h3>Subject: 03, Task: rhymejudgment</h3>
         
+        <h4>word &gt; pseudo</h4>
         
+        <img src="sub-03/figures/sub-03_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-wordGtPseudo_stat-FEMA_ortho.png" />
         
-        <h3>Subject: 03, Task: rhymejudgment</h3>
         
         <h4>task vs. baseline</h4>
         
         <img src="sub-03/figures/sub-03_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-taskVsBaseline_stat-FEMA_ortho.png" />
         
         
-        <h4>trial_type.pseudoword</h4>
-        
-        <p> Missing contrast skipped (used: <code>--drop-missing</code>) </p>
-        
-        
         <h4>trial_type.word</h4>
         
         <p> Missing contrast skipped (used: <code>--drop-missing</code>) </p>
         
         
-        <h4>word &gt; pseudo</h4>
+        <h4>trial_type.pseudoword</h4>
         
-        <img src="sub-03/figures/sub-03_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-wordGtPseudo_stat-FEMA_ortho.png" />
+        <p> Missing contrast skipped (used: <code>--drop-missing</code>) </p>
         
         
         
@@ -430,9 +430,9 @@ summary.heading-2 {
     <div id="about">
         <h1 class="sub-report-title">About</h1>
         <ul>
-            <li>Fitlins version: 0.8.0+155.gaf2460c</li>
-            <li>Fitlins command: <tt>/gpfs/gsfs11/users/MBDU/midla/env/bin/fitlins ds003/ds003_fmriprep/sourcedata ds003/nistats_smooth/out dataset -d ds003/ds003_fmriprep/ -m /data/MBDU/nielsond/dccc2019/try_gnode/fitlins_tests/ds003/models/model-001_smdl.json -w /lscratch/12128095/nistats_smooth --participant-label 01 02 03 --space MNI152NLin2009cAsym --estimator nistats --n-cpus 8 --mem-gb 8 -vv -s 10.0:l1:iso</tt></li>
-            <li>Date processed: 2021-04-20 10:32:03 -0400</li>
+            <li>Fitlins version: </li>
+            <li>Fitlins command: <tt>/opt/miniconda-latest/envs/neuro/bin/fitlins /data/MBDU/nielsond/dccc2019/try_gnode/fitlins_tests/ds003/ds003_fmriprep/sourcedata /data/MBDU/nielsond/dccc2019/try_gnode/fitlins_tests/ds003/nistats_smooth/out dataset -d /data/MBDU/nielsond/dccc2019/try_gnode/fitlins_tests/ds003/ds003_fmriprep/ -m /data/MBDU/nielsond/dccc2019/try_gnode/fitlins_tests/ds003/models/model-001_smdl.json -w /lscratch/12128095/nistats_smooth --participant-label 01 02 03 --space MNI152NLin2009cAsym --estimator nistats --n-cpus 8 --mem-gb 8 -vv -s 10.0:l1:iso</tt></li>
+            <li>Date processed: 2021-04-20 21:31:38 -0400</li>
         </ul>
     </div>
 </body>

ds003/nistats_smooth/out/fitlins/reports/sub-01/figures/sub-01_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-taskVsBaseline_stat-FEMA_ortho.png

@@ -1 +1 @@
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+../../../../../../../.git/annex/objects/7x/3g/MD5E-s163522--319a30343c92adb29933b5b712a7dc9d.png/MD5E-s163522--319a30343c92adb29933b5b712a7dc9d.png

ds003/nistats_smooth/out/fitlins/reports/sub-01/figures/sub-01_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-taskVsBaseline_stat-t_ortho.png

@@ -1 +1 @@
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+../../../../../../../.git/annex/objects/7x/3g/MD5E-s163522--319a30343c92adb29933b5b712a7dc9d.png/MD5E-s163522--319a30343c92adb29933b5b712a7dc9d.png

ds003/nistats_smooth/out/fitlins/reports/sub-01/figures/sub-01_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-trialType.Pseudoword_stat-FEMA_ortho.png

@@ -1 +1 @@
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+../../../../../../../.git/annex/objects/pK/GF/MD5E-s164002--b3b9d7c143d2e2c19e91de4a8e6ce813.png/MD5E-s164002--b3b9d7c143d2e2c19e91de4a8e6ce813.png

ds003/nistats_smooth/out/fitlins/reports/sub-01/figures/sub-01_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-trialType.Pseudoword_stat-t_ortho.png

@@ -1 +1 @@
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ds003/nistats_smooth/out/fitlins/reports/sub-01/figures/sub-01_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-trialType.Word_stat-FEMA_ortho.png

@@ -1 +1 @@
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+../../../../../../../.git/annex/objects/mX/5W/MD5E-s164666--239d0d1e7addea6d0c75bdd3ce717d66.png/MD5E-s164666--239d0d1e7addea6d0c75bdd3ce717d66.png

ds003/nistats_smooth/out/fitlins/reports/sub-01/figures/sub-01_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-trialType.Word_stat-t_ortho.png

@@ -1 +1 @@
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+../../../../../../../.git/annex/objects/mX/5W/MD5E-s164666--239d0d1e7addea6d0c75bdd3ce717d66.png/MD5E-s164666--239d0d1e7addea6d0c75bdd3ce717d66.png

ds003/nistats_smooth/out/fitlins/reports/sub-01/figures/sub-01_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-wordGtPseudo_stat-FEMA_ortho.png

@@ -1 +1 @@
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ds003/nistats_smooth/out/fitlins/reports/sub-01/figures/sub-01_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-wordGtPseudo_stat-t_ortho.png

@@ -1 +1 @@
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ds003/nistats_smooth/out/fitlins/reports/sub-02/figures/sub-02_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-taskVsBaseline_stat-FEMA_ortho.png

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ds003/nistats_smooth/out/fitlins/reports/sub-02/figures/sub-02_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-taskVsBaseline_stat-t_ortho.png

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ds003/nistats_smooth/out/fitlins/reports/sub-02/figures/sub-02_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-trialType.Pseudoword_stat-FEMA_ortho.png

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ds003/nistats_smooth/out/fitlins/reports/sub-02/figures/sub-02_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-trialType.Pseudoword_stat-t_ortho.png

@@ -1 +1 @@
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ds003/nistats_smooth/out/fitlins/reports/sub-02/figures/sub-02_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-trialType.Word_stat-FEMA_ortho.png

@@ -1 +1 @@
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ds003/nistats_smooth/out/fitlins/reports/sub-02/figures/sub-02_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-trialType.Word_stat-t_ortho.png

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ds003/nistats_smooth/out/fitlins/reports/sub-02/figures/sub-02_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-wordGtPseudo_stat-FEMA_ortho.png

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ds003/nistats_smooth/out/fitlins/reports/sub-02/figures/sub-02_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-wordGtPseudo_stat-t_ortho.png

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ds003/nistats_smooth/out/fitlins/reports/sub-03/figures/sub-03_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-taskVsBaseline_stat-FEMA_ortho.png

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ds003/nistats_smooth/out/fitlins/reports/sub-03/figures/sub-03_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-taskVsBaseline_stat-t_ortho.png

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ds003/nistats_smooth/out/fitlins/reports/sub-03/figures/sub-03_task-rhymejudgment_space-MNI152NLin2009cAsym_contrast-trialType.Pseudoword_stat-FEMA_ortho.png

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