[UPDATE] outputs per the latest fitlins version

ds003/afni_blurto/out/fitlins/dataset_description.json

@@ -3,13 +3,13 @@
   "BIDSVersion": "1.1.0",
   "PipelineDescription": {
     "Name": "FitLins",
-    "Version": "0.9.1+63.g8b5b82a",
+    "Version": "0.9.2+103.g33eb69d",
     "CodeURL": "https://github.com/poldracklab/fitlins",
     "Parameters": {
       "bids_dir": "../ds000003",
       "output_dir": "../afni_blurto",
       "analysis_level": "dataset",
-      "verbose": 1,
+      "verbose": 0,
       "quiet": 0,
       "participant_label": [
         "01",
@@ -25,7 +25,7 @@
       "force_index": null,
       "ignore": null,
       "desc_label": "preproc",
-      "database_path": "/home/shank/Stanford/multiverse/work/ds000003/afni_blurto/dbcache",
+      "database_path": "/home/shank/Stanford/fitlins/workdir/ds000003/afni_blurto/dbcache",
       "smoothing": "5.0:l1:isoblurto",
       "n_cpus": 3,
       "mem_gb": 15.0,

ds003/afni_blurto/out/fitlins/level-dataset_name-FTest_contrast-anyWords_stat-F_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-FTest_contrast-anyWords_stat-effect_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-FTest_contrast-anyWords_stat-p_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-FTest_contrast-anyWords_stat-variance_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-FTest_contrast-anyWords_stat-z_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-anyWords_contrast-anyWords_stat-F_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-anyWords_contrast-anyWords_stat-effect_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-anyWords_contrast-anyWords_stat-p_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-anyWords_contrast-anyWords_stat-variance_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-anyWords_contrast-anyWords_stat-z_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-tTest_contrast-taskVsBaseline_stat-effect_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-tTest_contrast-taskVsBaseline_stat-p_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-tTest_contrast-taskVsBaseline_stat-t_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-tTest_contrast-taskVsBaseline_stat-variance_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-tTest_contrast-taskVsBaseline_stat-z_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-tTest_contrast-wordGtPseudo_stat-effect_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-tTest_contrast-wordGtPseudo_stat-p_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-tTest_contrast-wordGtPseudo_stat-t_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-tTest_contrast-wordGtPseudo_stat-variance_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-tTest_contrast-wordGtPseudo_stat-z_statmap.nii.gz

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+../../../../.git/annex/objects/1g/96/MD5E-s422356--9ed1cb7049a073d1eabdd28d13e14614.nii.gz/MD5E-s422356--9ed1cb7049a073d1eabdd28d13e14614.nii.gz

ds003/afni_blurto/out/fitlins/level-dataset_name-taskVsBaseline_contrast-taskVsBaseline_stat-effect_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-taskVsBaseline_contrast-taskVsBaseline_stat-p_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-taskVsBaseline_contrast-taskVsBaseline_stat-t_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-taskVsBaseline_contrast-taskVsBaseline_stat-variance_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-taskVsBaseline_contrast-taskVsBaseline_stat-z_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-wordGtPseudo_contrast-wordGtPseudo_stat-effect_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-wordGtPseudo_contrast-wordGtPseudo_stat-p_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-wordGtPseudo_contrast-wordGtPseudo_stat-t_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-wordGtPseudo_contrast-wordGtPseudo_stat-variance_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/level-dataset_name-wordGtPseudo_contrast-wordGtPseudo_stat-z_statmap.nii.gz

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ds003/afni_blurto/out/fitlins/reports/model-ds003Model001.html

@@ -211,7 +211,13 @@ summary.heading-2 {
         
         <details open>
         <summary class="heading-1">Subject: 01</summary>
-        
+        <div class="warning">
+    The following confounds had NaN values for the first volume: framewise_displacement.
+    The mean of non-zero values for the remaining entries was imputed.
+    If another strategy is desired, it must be explicitly specified in
+    the model.
+</div>
+
         <img src="sub-01/figures/level-run_sub-01_design.svg" />
         <h4>Correlation matrix</h4>
         
@@ -231,7 +237,13 @@ summary.heading-2 {
         
         <details>
         <summary class="heading-1">Subject: 02</summary>
-        
+        <div class="warning">
+    The following confounds had NaN values for the first volume: framewise_displacement.
+    The mean of non-zero values for the remaining entries was imputed.
+    If another strategy is desired, it must be explicitly specified in
+    the model.
+</div>
+
         <img src="sub-02/figures/level-run_sub-02_design.svg" />
         <h4>Correlation matrix</h4>
         
@@ -241,7 +253,13 @@ summary.heading-2 {
         
         <details>
         <summary class="heading-1">Subject: 03</summary>
-        
+        <div class="warning">
+    The following confounds had NaN values for the first volume: framewise_displacement.
+    The mean of non-zero values for the remaining entries was imputed.
+    If another strategy is desired, it must be explicitly specified in
+    the model.
+</div>
+
         <img src="sub-03/figures/level-run_sub-03_design.svg" />
         <h4>Correlation matrix</h4>
         
@@ -292,22 +310,22 @@ summary.heading-2 {
         
         <h4>word &gt; pseudo</h4>
         
-        <img src="sub-01/figures/level-run_name-taskVsBaseline_sub-01_contrast-taskVsBaseline_stat-t_ortho.png" />
+        <img src="sub-01/figures/level-run_name-subject_sub-01_contrast-wordGtPseudo_stat-t_ortho.png" />
         
         
         <h4>task vs. baseline</h4>
         
-        <img src="sub-01/figures/level-run_name-taskVsBaseline_sub-01_contrast-taskVsBaseline_stat-t_ortho.png" />
+        <img src="sub-01/figures/level-run_name-subject_sub-01_contrast-taskVsBaseline_stat-t_ortho.png" />
         
         
         <h4>trial_type.pseudoword</h4>
         
-        <img src="sub-01/figures/level-run_name-taskVsBaseline_sub-01_contrast-taskVsBaseline_stat-t_ortho.png" />
+        <img src="sub-01/figures/level-run_name-subject_sub-01_contrast-trialTypePseudoword_stat-t_ortho.png" />
         
         
         <h4>trial_type.word</h4>
         
-        <img src="sub-01/figures/level-run_name-taskVsBaseline_sub-01_contrast-taskVsBaseline_stat-t_ortho.png" />
+        <img src="sub-01/figures/level-run_name-subject_sub-01_contrast-trialTypeWord_stat-t_ortho.png" />
         
         
         
@@ -315,22 +333,22 @@ summary.heading-2 {
         
         <h4>word &gt; pseudo</h4>
         
-        <img src="sub-02/figures/level-run_name-taskVsBaseline_sub-02_contrast-taskVsBaseline_stat-t_ortho.png" />
+        <img src="sub-02/figures/level-run_name-subject_sub-02_contrast-wordGtPseudo_stat-t_ortho.png" />
         
         
         <h4>task vs. baseline</h4>
         
-        <img src="sub-02/figures/level-run_name-taskVsBaseline_sub-02_contrast-taskVsBaseline_stat-t_ortho.png" />
+        <img src="sub-02/figures/level-run_name-subject_sub-02_contrast-taskVsBaseline_stat-t_ortho.png" />
         
         
         <h4>trial_type.pseudoword</h4>
         
-        <img src="sub-02/figures/level-run_name-taskVsBaseline_sub-02_contrast-taskVsBaseline_stat-t_ortho.png" />
+        <img src="sub-02/figures/level-run_name-subject_sub-02_contrast-trialTypePseudoword_stat-t_ortho.png" />
         
         
         <h4>trial_type.word</h4>
         
-        <img src="sub-02/figures/level-run_name-taskVsBaseline_sub-02_contrast-taskVsBaseline_stat-t_ortho.png" />
+        <img src="sub-02/figures/level-run_name-subject_sub-02_contrast-trialTypeWord_stat-t_ortho.png" />
         
         
         
@@ -338,22 +356,22 @@ summary.heading-2 {
         
         <h4>word &gt; pseudo</h4>
         
-        <img src="sub-03/figures/level-run_name-taskVsBaseline_sub-03_contrast-taskVsBaseline_stat-t_ortho.png" />
+        <img src="sub-03/figures/level-run_name-subject_sub-03_contrast-wordGtPseudo_stat-t_ortho.png" />
         
         
         <h4>task vs. baseline</h4>
         
-        <img src="sub-03/figures/level-run_name-taskVsBaseline_sub-03_contrast-taskVsBaseline_stat-t_ortho.png" />
+        <img src="sub-03/figures/level-run_name-subject_sub-03_contrast-taskVsBaseline_stat-t_ortho.png" />
         
         
         <h4>trial_type.pseudoword</h4>
         
-        <img src="sub-03/figures/level-run_name-taskVsBaseline_sub-03_contrast-taskVsBaseline_stat-t_ortho.png" />
+        <img src="sub-03/figures/level-run_name-subject_sub-03_contrast-trialTypePseudoword_stat-t_ortho.png" />
         
         
         <h4>trial_type.word</h4>
         
-        <img src="sub-03/figures/level-run_name-taskVsBaseline_sub-03_contrast-taskVsBaseline_stat-t_ortho.png" />
+        <img src="sub-03/figures/level-run_name-subject_sub-03_contrast-trialTypeWord_stat-t_ortho.png" />
         
         
         
@@ -364,7 +382,7 @@ summary.heading-2 {
         
         <h4>word &gt; pseudo</h4>
         
-        <img src="figures/level-dataset_name-wordGtPseudo_contrast-wordGtPseudo_stat-t_ortho.png" />
+        <img src="figures/level-dataset_name-tTest_contrast-wordGtPseudo_stat-t_ortho.png" />
         
         
         
@@ -372,7 +390,7 @@ summary.heading-2 {
         
         <h4>task vs. baseline</h4>
         
-        <img src="figures/level-dataset_name-taskVsBaseline_contrast-taskVsBaseline_stat-t_ortho.png" />
+        <img src="figures/level-dataset_name-tTest_contrast-taskVsBaseline_stat-t_ortho.png" />
         
         
         
@@ -383,7 +401,7 @@ summary.heading-2 {
         
         <h4>any_words</h4>
         
-        <img src="figures/level-dataset_name-anyWords_contrast-anyWords_stat-F_ortho.png" />
+        <img src="figures/level-dataset_name-FTest_contrast-anyWords_stat-F_ortho.png" />
         
         
         
@@ -392,9 +410,9 @@ summary.heading-2 {
     <div id="about">
         <h1 class="sub-report-title">About</h1>
         <ul>
-            <li>Fitlins version: 0.9.1+63.g8b5b82a</li>
-            <li>Fitlins command: <tt>/home/shank/miniconda3/envs/fitlins38_2/bin/fitlins /home/shank/HDDLinux/Stanford/data/narps-multiverse/OpenNeuro/ds000003 /home/shank/Stanford/multiverse/fitlins-output/ds000003/afni_blurto dataset --participant-label 01 02 03 --space MNI152NLin2009cAsym -d /home/shank/HDDLinux/Stanford/data/narps-multiverse/ds000003/derivatives/fmriprep -m /home/shank/Stanford/multiverse/fitlins-models/model-ds0003_smdl.json --estimator afni --smoothing 5.0:l1:isoblurto --drift-model cosine -w /home/shank/Stanford/multiverse/work/ds000003/afni_blurto --database-path /home/shank/Stanford/multiverse/work/ds000003/afni_blurto/dbcache --n-cpus=3 --mem-gb=15 --debug -v</tt></li>
-            <li>Date processed: 2021-09-20 16:32:08 -0700</li>
+            <li>Fitlins version: 0.9.2+103.g33eb69d</li>
+            <li>Fitlins command: <tt>/home/shank/miniconda3/envs/fitlins38_2/bin/fitlins /home/shank/HDDLinux/Stanford/data/narps-multiverse/OpenNeuro/ds000003/ /home/shank/HDDLinux/Stanford/fitlins/outputs/ds000003/afni_blurto dataset --participant-label 01 02 03 --space MNI152NLin2009cAsym -d /home/shank/HDDLinux/Stanford/data/narps-multiverse/ds000003/derivatives/fmriprep -m /home/shank/HDDLinux/Stanford/fitlins/models/model-ds0003_smdl.json --estimator afni --smoothing 5.0:l1:isoblurto --drift-model cosine -w /home/shank/HDDLinux/Stanford/fitlins/workdir/ds000003/afni_blurto --database-path /home/shank/Stanford/fitlins/workdir/ds000003/afni_blurto/dbcache --n-cpus=3 --mem-gb=15 --debug</tt></li>
+            <li>Date processed: 2021-12-07 15:16:33 -0800</li>
         </ul>
     </div>
 </body>

ds003/afni_blurto/out/fitlins/reports/sub-01/figures/level-run_sub-01_contrasts.svg

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