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- Node: workflow_enumerator.anatMRIQCT1w.conform
- Working directory: /pasteur/projets/policy01/cinq/rto/data/abide/work/workflow_enumerator/anatMRIQCT1w/_in_file_..pasteur..projets..policy01..cinq..rto..data..abide..RawDataBIDS..Pitt..sub-0050049..anat..sub-0050049_T1w.nii.gz/conform
- Node inputs:
- check_dtype = False
- check_ras = True
- in_file = /pasteur/projets/policy01/cinq/rto/data/abide/RawDataBIDS/Pitt/sub-0050049/anat/sub-0050049_T1w.nii.gz
- Traceback (most recent call last):
- File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/multiproc.py", line 69, in run_node
- result['result'] = node.run(updatehash=updatehash)
- File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 472, in run
- result = self._run_interface(execute=True)
- File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 563, in _run_interface
- return self._run_command(execute)
- File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 643, in _run_command
- result = self._interface.run(cwd=outdir)
- File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 375, in run
- runtime = self._run_interface(runtime)
- File "/usr/local/miniconda/lib/python3.7/site-packages/mriqc/interfaces/common.py", line 99, in _run_interface
- nii = nb.squeeze_image(nb.load(self.inputs.in_file))
- File "/usr/local/miniconda/lib/python3.7/site-packages/nibabel/loadsave.py", line 44, in load
- raise ImageFileError("Empty file: '%s'" % filename)
- nibabel.filebasedimages.ImageFileError: Empty file: '/pasteur/projets/policy01/cinq/rto/data/abide/RawDataBIDS/Pitt/sub-0050049/anat/sub-0050049_T1w.nii.gz'
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